Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G17800 - ( ARAC1 GTP binding )
62 Proteins interacs with AT2G17800Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT4G38430 | Experimentalbiochemical | FSW = 0.1020
| Class D:nucleus (p = 0.78) | ROPGEF1 RHO GUANYL-NUCLEOTIDE EXCHANGE FACTOR/ PROTEIN BINDING |
AT4G01190 | Experimentalpull downAffinity Capture-MS | FSW = 0.0312
| Unknown | ATPIPK10 (ARABIDOPSIS PHOSPHATIDYLINOSITOL PHOSPHATE KINASE 10) 1-PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE |
AT1G04820 | PredictedAffinity Capture-MS | FSW = 0.0073
| Unknown | TUA4 STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT3G14420 | Predictedtwo hybrid | FSW = 0.0522
| Unknown | (S)-2-HYDROXY-ACID OXIDASE PEROXISOMAL PUTATIVE / GLYCOLATE OXIDASE PUTATIVE / SHORT CHAIN ALPHA-HYDROXY ACID OXIDASE PUTATIVE |
AT2G47680 | PredictedAffinity Capture-MS | FSW = 0.0148
| Unknown | ZINC FINGER (CCCH TYPE) HELICASE FAMILY PROTEIN |
AT2G31910 | Predictedtwo hybrid | FSW = 0.0835
| Unknown | ATCHX21 (CATION/H+ EXCHANGER 21) SODIUMHYDROGEN ANTIPORTER |
AT5G03650 | Predictedtwo hybrid | FSW = 0.0644
| Unknown | SBE22 (STARCH BRANCHING ENZYME 22) 14-ALPHA-GLUCAN BRANCHING ENZYME |
AT3G56160 | PredictedAffinity Capture-MS | FSW = 0.0334
| Unknown | BILE ACIDSODIUM SYMPORTER |
AT5G06290 | PredictedAffinity Capture-MS | FSW = 0.0026
| Unknown | 2-CYS PRX B (2-CYSTEINE PEROXIREDOXIN B) ANTIOXIDANT/ PEROXIREDOXIN |
AT5G13120 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1387
| Unknown | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYCLOPHILIN-TYPE FAMILY PROTEIN |
AT2G25520 | PredictedAffinity Capture-MS | FSW = 0.0321
| Unknown | PHOSPHATE TRANSLOCATOR-RELATED |
AT5G62880 | PredictedAffinity Capture-MSPhylogenetic profile methodCo-expression | FSW = 0.0881
| Unknown | ARAC10 GTP BINDING |
AT1G75840 | PredictedAffinity Capture-MSPhylogenetic profile methodCo-expression | FSW = 0.1826
| Unknown | ARAC5 (RAC-LIKE GTP BINDING PROTEIN 5) GTP BINDING / GTPASE |
AT3G47370 | PredictedAffinity Capture-MS | FSW = 0.0243
| Unknown | 40S RIBOSOMAL PROTEIN S20 (RPS20B) |
AT2G33370 | Predictedtwo hybridtwo hybrid | FSW = 0.0394
| Unknown | 60S RIBOSOMAL PROTEIN L23 (RPL23B) |
AT4G28950 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1257
| Unknown | ROP9 (RHO-RELATED PROTEIN FROM PLANTS 9) GTP BINDING |
AT1G20090 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1461
| Unknown | ROP2 (RHO-RELATED PROTEIN FROM PLANTS 2) GTP BINDING |
AT1G64740 | PredictedAffinity Capture-MSin vivoCo-expression | FSW = 0.0273
| Unknown | TUA1 (ALPHA-1 TUBULIN) STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT4G35020 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1144
| Unknown | ARAC3 (ARABIDOPSIS RAC-LIKE 3) GTP BINDING / GTPASE |
AT5G12150 | Predictedin vitroEnriched domain pairCo-expression | FSW = 0.0189
| Unknown | PLECKSTRIN HOMOLOGY (PH) DOMAIN-CONTAINING PROTEIN / RHOGAP DOMAIN-CONTAINING PROTEIN |
AT2G44690 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.1486
| Unknown | ARAC9 GTP BINDING |
AT5G45970 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2072
| Unknown | ARAC2 (ARABIDOPSIS RAC-LIKE 2) GTP BINDING |
AT4G35950 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1721
| Unknown | ARAC6 (ARABIDOPSIS RAC-LIKE 6) GTP BINDING |
AT5G10080 | PredictedAffinity Capture-MS | FSW = 0.0159
| Unknown | ASPARTYL PROTEASE FAMILY PROTEIN |
AT4G15000 | PredictedPhenotypic Enhancement | FSW = 0.0055
| Unknown | 60S RIBOSOMAL PROTEIN L27 (RPL27C) |
AT3G48040 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2780
| Unknown | ROP10 (RHO-RELATED PROTEIN FROM PLANTS 10) GTP BINDING / GTPASE |
AT4G34430 | PredictedAffinity Capture-MS | FSW = 0.0233
| Unknown | CHB3 DNA BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING |
AT5G24090 | PredictedSynthetic Lethality | FSW = 0.0378
| Unknown | ACIDIC ENDOCHITINASE (CHIB1) |
AT3G51300 | PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.1625
| Unknown | ROP1 (RHO-RELATED PROTEIN FROM PLANTS 1) GTP BINDING / GTPASE ACTIVATING PROTEIN BINDING / GTPASE/ PROTEIN BINDING |
AT4G27070 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.0692
| Unknown | TSB2 (TRYPTOPHAN SYNTHASE BETA-SUBUNIT 2) TRYPTOPHAN SYNTHASE |
AT4G10920 | PredictedAffinity Capture-MS | FSW = 0.0688
| Unknown | KELP DNA BINDING / TRANSCRIPTION COACTIVATOR/ TRANSCRIPTION REGULATOR |
AT3G07880 | PredictedAffinity Capture-MSin vivotwo hybridEnriched domain pairCo-expression | FSW = 0.1002
| Unknown | RHO GDP-DISSOCIATION INHIBITOR FAMILY PROTEIN |
AT4G30800 | Predictedtwo hybrid | FSW = 0.0328
| Unknown | 40S RIBOSOMAL PROTEIN S11 (RPS11B) |
AT4G17190 | PredictedAffinity Capture-MS | FSW = 0.0353
| Unknown | FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) DIMETHYLALLYLTRANSTRANSFERASE/ GERANYLTRANSTRANSFERASE |
AT2G19770 | PredictedPhenotypic Suppression | FSW = 0.0329
| Unknown | PRF5 (PROFILIN5) ACTIN BINDING / ACTIN MONOMER BINDING |
AT1G60730 | PredictedAffinity Capture-MS | FSW = 0.0572
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
AT1G63370 | PredictedAffinity Capture-MS | FSW = 0.0267
| Unknown | FLAVIN-CONTAINING MONOOXYGENASE FAMILY PROTEIN / FMO FAMILY PROTEIN |
AT1G74810 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternSynthetic LethalityPhenotypic Enhancement | FSW = 0.1347
| Unknown | BOR5 ANION EXCHANGER |
AT2G29190 | PredictedSynthetic Lethality | FSW = 0.0092
| Unknown | APUM2 (ARABIDOPSIS PUMILIO 2) RNA BINDING / BINDING |
AT2G35390 | Predictedtwo hybridAffinity Capture-MS | FSW = 0.0211
| Unknown | RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 1 / PHOSPHORIBOSYL DIPHOSPHATE SYNTHETASE 1 (PRSI) |
AT3G12200 | PredictedAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.0740
| Unknown | ATNEK7 (NIMA-RELATED KINASE7) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT3G61740 | PredictedAffinity Capture-MSsynthetic growth defect | FSW = 0.0321
| Unknown | SDG14 (SET DOMAIN PROTEIN 14) DNA BINDING / PROTEIN BINDING / ZINC ION BINDING |
AT4G04700 | PredictedAffinity Capture-MS | FSW = 0.0298
| Unknown | CPK27 ATP BINDING / CALCIUM ION BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT4G20280 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1258
| Unknown | TAF11 (TBP-ASSOCIATED FACTOR 11) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ TRANSCRIPTION INITIATION FACTOR |
AT5G10930 | Predictedtwo hybrid | FSW = 0.0803
| Unknown | CIPK5 (CBL-INTERACTING PROTEIN KINASE 5) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G15240 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-purification | FSW = 0.1996
| Unknown | AMINO ACID TRANSPORTER FAMILY PROTEIN |
AT5G42720 | PredictedPhenotypic Enhancement | FSW = 0.0047
| Unknown | GLYCOSYL HYDROLASE FAMILY 17 PROTEIN |
AT5G49970 | PredictedAffinity Capture-MS | FSW = 0.0381
| Unknown | ATPPOX (A THALIANA PYRIDOXIN (PYRODOXAMINE) 5-PHOSPHATE OXIDASE) PYRIDOXAMINE-PHOSPHATE OXIDASE |
AT5G60550 | PredictedAffinity Capture-MSAffinity Capture-MSSynthetic Lethalitysynthetic growth defectPhenotypic EnhancementAffinity Capture-Western | FSW = 0.0938
| Unknown | GRIK2 (GEMINIVIRUS REP INTERACTING KINASE 2) KINASE |
AT2G19750 | PredictedAffinity Capture-MS | FSW = 0.0117
| Unknown | 40S RIBOSOMAL PROTEIN S30 (RPS30A) |
AT2G20290 | PredictedAffinity Capture-MS | FSW = 0.0703
| Unknown | XIG MOTOR/ PROTEIN BINDING |
AT2G31900 | PredictedAffinity Capture-MS | FSW = 0.1082
| Unknown | XIF MOTOR |
AT4G19880 | PredictedAffinity Capture-MS | FSW = 0.0364
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RESPONSE TO CADMIUM ION LOCATED IN CHLOROPLAST EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S GLUTATHIONE S-TRANSFERASE PREDICTED (INTERPROIPR016639) GLUTATHIONE S-TRANSFERASE C-TERMINAL (INTERPROIPR004046) GLUTATHIONE S-TRANSFERASE C-TERMINAL-LIKE (INTERPROIPR010987) GLUTATHIONE S-TRANSFERASE/CHLORIDE CHANNEL C-TERMINAL (INTERPROIPR017933) THIOREDOXIN-LIKE FOLD (INTERPROIPR012336) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT5G450201) HAS 1635 BLAST HITS TO 1635 PROTEINS IN 489 SPECIES ARCHAE - 12 BACTERIA - 905 METAZOA - 23 FUNGI - 158 PLANTS - 57 VIRUSES - 0 OTHER EUKARYOTES - 480 (SOURCE NCBI BLINK) |
AT4G21800 | PredictedReconstituted Complex | FSW = 0.0378
| Unknown | QQT2 (QUATRE-QUART2) ATP BINDING / NUCLEOTIDE BINDING |
AT5G38030 | PredictedAffinity Capture-MS | FSW = 0.0103
| Unknown | MATE EFFLUX FAMILY PROTEIN |
AT2G30880 | PredictedAffinity Capture-MSin vitroEnriched domain pair | FSW = 0.0909
| Unknown | PLECKSTRIN HOMOLOGY (PH) DOMAIN-CONTAINING PROTEIN |
AT5G18410 | PredictedAffinity Capture-MSin vitroin vivo | FSW = 0.0529
| Unknown | PIR121 TRANSCRIPTION ACTIVATOR |
AT4G31170 | Predictedin vitro | FSW = 0.0522
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT5G65090 | Predictedin vitroin vivotwo hybrid | FSW = 0.0144
| Unknown | BST1 (BRISTLED 1) HYDROLASE/ INOSITOL OR PHOSPHATIDYLINOSITOL PHOSPHATASE |
AT3G16785 | Predictedin vivoEnriched domain pairCo-expression | FSW = 0.0455
| Unknown | PLDP1 (PHOSPHOLIPASE D P1) PHOSPHOLIPASE D |
AT1G12070 | Predictedin vivoEnriched domain pairCo-expression | FSW = 0.0825
| Unknown | RHO GDP-DISSOCIATION INHIBITOR FAMILY PROTEIN |
AT5G06150 | PredictedPhenotypic Suppression | FSW = 0.0515
| Unknown | CYC1BAT CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454