Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G20290 - ( XIG motor/ protein binding )
81 Proteins interacs with AT2G20290| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT3G57990
   | PredictedSynthetic Lethality | FSW = 0.0193
| Unknown | UNKNOWN PROTEIN |
| AT5G13450
| PredictedAffinity Capture-MS | FSW = 0.0630
| Unknown | ATP SYNTHASE DELTA CHAIN MITOCHONDRIAL PUTATIVE / H(+)-TRANSPORTING TWO-SECTOR ATPASE DELTA (OSCP) SUBUNIT PUTATIVE |
| AT1G07890
| PredictedAffinity Capture-MS | FSW = 0.0260
| Unknown | APX1 (ASCORBATE PEROXIDASE 1) L-ASCORBATE PEROXIDASE |
| AT5G09660
| PredictedAffinity Capture-MS | FSW = 0.0898
| Unknown | PMDH2 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 2) MALATE DEHYDROGENASE |
| AT3G56160 | PredictedAffinity Capture-MS | FSW = 0.0742
| Unknown | BILE ACIDSODIUM SYMPORTER |
| AT1G19660
| PredictedAffinity Capture-MS | FSW = 0.0562
| Unknown | WOUND-RESPONSIVE FAMILY PROTEIN |
| AT3G14930
| PredictedAffinity Capture-MS | FSW = 0.0129
| Unknown | HEME1 UROPORPHYRINOGEN DECARBOXYLASE |
| AT1G12900
| PredictedAffinity Capture-MS | FSW = 0.0440
| Unknown | GAPA-2 (GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT 2) NAD OR NADH BINDING / BINDING / CATALYTIC/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE (PHOSPHORYLATING)/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE |
| AT3G18790
| PredictedPhenotypic Enhancement | FSW = 0.0096
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CHLOROPLAST EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S ISY1-LIKE SPLICING (INTERPROIPR009360) HAS 1075 BLAST HITS TO 879 PROTEINS IN 176 SPECIES ARCHAE - 8 BACTERIA - 11 METAZOA - 379 FUNGI - 177 PLANTS - 27 VIRUSES - 9 OTHER EUKARYOTES - 464 (SOURCE NCBI BLINK) |
| AT5G45420
| PredictedAffinity Capture-MS | FSW = 0.0279
| Unknown | MYB FAMILY TRANSCRIPTION FACTOR |
| AT2G14120
| PredictedAffinity Capture-MS | FSW = 0.0309
| Unknown | DYNAMIN-LIKE PROTEIN 2B (ADL2B) |
| AT2G21540
| PredictedAffinity Capture-MS | FSW = 0.0245
| Unknown | SFH3 (SEC14-LIKE 3) PHOSPHATIDYLINOSITOL TRANSPORTER |
| AT4G36490
| PredictedAffinity Capture-MS | FSW = 0.1553
| Unknown | SFH12 (SEC14-LIKE 12) PHOSPHATIDYLINOSITOL TRANSPORTER/ TRANSPORTER |
| AT3G53890
| PredictedAffinity Capture-MS | FSW = 0.0219
| Unknown | 40S RIBOSOMAL PROTEIN S21 (RPS21B) |
| AT2G47160
| PredictedAffinity Capture-MS | FSW = 0.0408
| Unknown | BOR1 (REQUIRES HIGH BORON 1) ANION EXCHANGER/ BORON TRANSPORTER |
| AT1G50310
| PredictedAffinity Capture-MS | FSW = 0.0052
| Unknown | STP9 (SUGAR TRANSPORTER 9) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
| AT3G45850
| PredictedPhenotypic Enhancement | FSW = 0.0127
| Unknown | KINESIN MOTOR PROTEIN-RELATED |
| AT5G61510
| PredictedAffinity Capture-MS | FSW = 0.0125
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
| AT1G79450
| PredictedAffinity Capture-MS | FSW = 0.0311
| Unknown | ALIS5 (ALA-INTERACTING SUBUNIT 5) |
| AT4G24400
| PredictedAffinity Capture-MS | FSW = 0.0441
| Unknown | CIPK8 (CBL-INTERACTING PROTEIN KINASE 8) KINASE/ PROTEIN KINASE |
| AT1G64230
| PredictedAffinity Capture-MS | FSW = 0.0126
| Unknown | UBIQUITIN-CONJUGATING ENZYME PUTATIVE |
| AT5G02490
| PredictedAffinity Capture-MS | FSW = 0.0164
| Unknown | HEAT SHOCK COGNATE 70 KDA PROTEIN 2 (HSC70-2) (HSP70-2) |
| AT1G07180
| PredictedAffinity Capture-MS | FSW = 0.0241
| Unknown | NDA1 (ALTERNATIVE NAD(P)H DEHYDROGENASE 1) NADH DEHYDROGENASE |
| AT2G43810
| PredictedAffinity Capture-MS | FSW = 0.0080
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN F PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE / SM PROTEIN F PUTATIVE |
| AT5G60980
| PredictedAffinity Capture-MS | FSW = 0.1167
| Unknown | NUCLEAR TRANSPORT FACTOR 2 (NTF2) FAMILY PROTEIN / RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
| AT1G29880
| PredictedAffinity Capture-MS | FSW = 0.0112
| Unknown | GLYCYL-TRNA SYNTHETASE / GLYCINE--TRNA LIGASE |
| AT5G47630
| Predictedbiochemical | FSW = 0.1296
| Unknown | MTACP3 (MITOCHONDRIAL ACYL CARRIER PROTEIN 3) ACYL CARRIER/ COFACTOR BINDING |
| AT3G20970
| PredictedAffinity Capture-MS | FSW = 0.0667
| Unknown | NFU4 STRUCTURAL MOLECULE |
| AT1G64880
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0527
| Unknown | RIBOSOMAL PROTEIN S5 FAMILY PROTEIN |
| AT5G02730
| PredictedPhenotypic Suppression | FSW = 0.0712
| Unknown | ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN |
| AT2G19980
| PredictedAffinity Capture-WesternAffinity Capture-MS | FSW = 0.0906
| Unknown | ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN |
| AT1G76400
| PredictedAffinity Capture-MS | FSW = 0.0133
| Unknown | RIBOPHORIN I FAMILY PROTEIN |
| AT4G01510
| PredictedAffinity Capture-MS | FSW = 0.0123
| Unknown | ARV2 |
| AT1G52300
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSReconstituted Complex | FSW = 0.0919
| Unknown | 60S RIBOSOMAL PROTEIN L37 (RPL37B) |
| AT4G39200
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1707
| Unknown | 40S RIBOSOMAL PROTEIN S25 (RPS25E) |
| AT2G17800
| PredictedAffinity Capture-MS | FSW = 0.0703
| Unknown | ARAC1 GTP BINDING |
| AT5G41480
| PredictedAffinity Capture-MS | FSW = 0.0453
| Unknown | GLA1 (GLOBULAR ARREST1) DIHYDROFOLATE SYNTHASE |
| AT4G27070
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1906
| Unknown | TSB2 (TRYPTOPHAN SYNTHASE BETA-SUBUNIT 2) TRYPTOPHAN SYNTHASE |
| AT1G77990
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2823
| Unknown | AST56 SULFATE TRANSMEMBRANE TRANSPORTER |
| AT2G29540
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0858
| Unknown | ATRPC14 (RNA POLYMERASE 14 KDA SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION |
| AT3G22880
| PredictedAffinity Capture-MS | FSW = 0.0530
| Unknown | DMC1 (DISRUPTION OF MEIOTIC CONTROL 1) ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
| AT1G07820 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0727
| Unknown | HISTONE H4 |
| AT1G17130
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSReconstituted Complex | FSW = 0.0636
| Unknown | CELL CYCLE CONTROL PROTEIN-RELATED |
| AT1G30825
| PredictedAffinity Capture-MS | FSW = 0.0063
| Unknown | DIS2 (DISTORTED TRICHOMES 2) STRUCTURAL MOLECULE |
| AT1G34580
| PredictedAffinity Capture-MS | FSW = 0.0931
| Unknown | MONOSACCHARIDE TRANSPORTER PUTATIVE |
| AT1G60730
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0915
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
| AT2G15910
| PredictedAffinity Capture-MSAffinity Capture-MSsynthetic growth defect | FSW = 0.1824
| Unknown | CSL ZINC FINGER DOMAIN-CONTAINING PROTEIN |
| AT2G16740
| PredictedAffinity Capture-MS | FSW = 0.0387
| Unknown | UBC29 (UBIQUITIN-CONJUGATING ENZYME 29) UBIQUITIN-PROTEIN LIGASE |
| AT2G19220
| PredictedAffinity Capture-MS | FSW = 0.0545
| Unknown | UNKNOWN PROTEIN |
| AT1G02100
| PredictedAffinity Capture-MS | FSW = 0.0290
| Unknown | LEUCINE CARBOXYL METHYLTRANSFERASE FAMILY PROTEIN |
| AT1G11510
| PredictedbiochemicalAffinity Capture-MS | FSW = 0.0950
| Unknown | DNA-BINDING STOREKEEPER PROTEIN-RELATED |
| AT1G11755
| PredictedAffinity Capture-MS | FSW = 0.1138
| Unknown | LEW1 (LEAF WILTING 1) DEHYDRODOLICHYL DIPHOSPHATE SYNTHASE |
| AT1G21370
| PredictedPhenotypic Suppression | FSW = 0.0526
| Unknown | UNKNOWN PROTEIN |
| AT1G55300
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0484
| Unknown | TAF7 (TBP-ASSOCIATED FACTOR 7) GENERAL RNA POLYMERASE II TRANSCRIPTION FACTOR |
| AT1G68020
| PredictedPhenotypic Suppression | FSW = 0.0516
| Unknown | ATTPS6 ALPHAALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING)/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS / TREHALOSE-PHOSPHATASE |
| AT1G74810
| PredictedAffinity Capture-MS | FSW = 0.0424
| Unknown | BOR5 ANION EXCHANGER |
| AT2G01830
| PredictedAffinity Capture-MS | FSW = 0.0090
| Unknown | WOL (WOODEN LEG) CYTOKININ RECEPTOR/ OSMOSENSOR/ PHOSPHOPROTEIN PHOSPHATASE/ PROTEIN HISTIDINE KINASE |
| AT2G23820
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1084
| Unknown | METAL-DEPENDENT PHOSPHOHYDROLASE HD DOMAIN-CONTAINING PROTEIN |
| AT2G29390
| PredictedAffinity Capture-MS | FSW = 0.0177
| Unknown | SMO2-2 (STEROL 4-ALPHA-METHYL-OXIDASE 2-2) 4-ALPHA-METHYL-DELTA7-STEROL-4ALPHA-METHYL OXIDASE/ C-4 METHYLSTEROL OXIDASE |
| AT2G31900
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3444
| Unknown | XIF MOTOR |
| AT2G47970
| PredictedAffinity Capture-MS | FSW = 0.0250
| Unknown | NPL4 FAMILY PROTEIN |
| AT3G09700
| PredictedAffinity Capture-MS | FSW = 0.0338
| Unknown | DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN |
| AT3G21460
| PredictedAffinity Capture-WesternReconstituted Complex | FSW = 0.0839
| Unknown | ELECTRON CARRIER/ PROTEIN DISULFIDE OXIDOREDUCTASE |
| AT4G04700
| PredictedAffinity Capture-MS | FSW = 0.1278
| Unknown | CPK27 ATP BINDING / CALCIUM ION BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
| AT4G21480
| PredictedAffinity Capture-MS | FSW = 0.0202
| Unknown | CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
| AT5G01770
| PredictedPhenotypic Suppression | FSW = 0.0829
| Unknown | RAPTOR2 (RAPTOR2) BINDING / NUCLEOTIDE BINDING |
| AT5G13860
| PredictedCo-purificationCo-purificationAffinity Capture-MS | FSW = 0.2715
| Unknown | ELC-LIKE (ELCH-LIKE) SMALL CONJUGATING PROTEIN LIGASE |
| AT5G14180
| PredictedPhenotypic Suppression | FSW = 0.1223
| Unknown | MPL1 (MYZUS PERSICAE-INDUCED LIPASE 1) CATALYTIC |
| AT5G41700
| PredictedAffinity Capture-MS | FSW = 0.0478
| Unknown | UBC8 (UBIQUITIN CONJUGATING ENZYME 8) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
| AT5G45900
| PredictedPhenotypic Enhancement | FSW = 0.0087
| Unknown | APG7 (AUTOPHAGY 7) APG8 ACTIVATING ENZYME |
| AT5G46150
| PredictedAffinity Capture-MS | FSW = 0.0368
| Unknown | LEM3 (LIGAND-EFFECT MODULATOR 3) FAMILY PROTEIN / CDC50 FAMILY PROTEIN |
| AT5G61010
| PredictedPhenotypic SuppressionAffinity Capture-Western | FSW = 0.1361
| Unknown | ATEXO70E2 (EXOCYST SUBUNIT EXO70 FAMILY PROTEIN E2) PROTEIN BINDING |
| AT5G67380
| PredictedAffinity Capture-MS | FSW = 0.0178
| Unknown | CKA1 (CASEIN KINASE ALPHA 1) KINASE |
| AT3G01100
| PredictedAffinity Capture-MS | FSW = 0.0750
| Unknown | HYP1 (HYPOTHETICAL PROTEIN 1) |
| AT3G12200
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2689
| Unknown | ATNEK7 (NIMA-RELATED KINASE7) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
| AT3G13060
| PredictedAffinity Capture-MS | FSW = 0.0240
| Unknown | ECT5 FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S YT521-B-LIKE PROTEIN (INTERPROIPR007275) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS ECT2 PROTEIN BINDING (TAIRAT3G134601) HAS 1007 BLAST HITS TO 965 PROTEINS IN 147 SPECIES ARCHAE - 0 BACTERIA - 8 METAZOA - 528 FUNGI - 103 PLANTS - 235 VIRUSES - 0 OTHER EUKARYOTES - 133 (SOURCE NCBI BLINK) |
| AT3G46320 | PredictedAffinity Capture-MS | FSW = 0.0468
| Unknown | HISTONE H4 |
| AT4G19880
| PredictedAffinity Capture-MS | FSW = 0.0286
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RESPONSE TO CADMIUM ION LOCATED IN CHLOROPLAST EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S GLUTATHIONE S-TRANSFERASE PREDICTED (INTERPROIPR016639) GLUTATHIONE S-TRANSFERASE C-TERMINAL (INTERPROIPR004046) GLUTATHIONE S-TRANSFERASE C-TERMINAL-LIKE (INTERPROIPR010987) GLUTATHIONE S-TRANSFERASE/CHLORIDE CHANNEL C-TERMINAL (INTERPROIPR017933) THIOREDOXIN-LIKE FOLD (INTERPROIPR012336) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT5G450201) HAS 1635 BLAST HITS TO 1635 PROTEINS IN 489 SPECIES ARCHAE - 12 BACTERIA - 905 METAZOA - 23 FUNGI - 158 PLANTS - 57 VIRUSES - 0 OTHER EUKARYOTES - 480 (SOURCE NCBI BLINK) |
| AT5G06150
| PredictedAffinity Capture-MS | FSW = 0.0179
| Unknown | CYC1BAT CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
| AT5G06600
| PredictedAffinity Capture-MS | FSW = 0.0659
| Unknown | UBP12 (UBIQUITIN-SPECIFIC PROTEASE 12) UBIQUITIN THIOLESTERASE/ UBIQUITIN-SPECIFIC PROTEASE |
| AT1G04160
| PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.0028
| Unknown | XIB (MYOSIN XI B) MOTOR |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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