AtPIN will be upgraded. Please send your suggestions here

AT5G45420 - ( myb family transcription factor )

71 Proteins interacs with AT5G45420

Locus	Method	FSW	Cellular Compartment Classification (C3)	Description
AT5G42020	Predicted in vitro	FSW = 0.0083	Class C: plasma membrane nucleus endoplasmic reticulum	BIP2 ATP BINDING
AT5G60390	Predicted Affinity Capture-MS	FSW = 0.3780	Class C: plasma membrane nucleus	ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA
AT1G27970	Predicted Affinity Capture-MS	FSW = 0.4536	Class C: plasma membrane nucleus	NTF2B (NUCLEAR TRANSPORT FACTOR 2B) RAN GTPASE BINDING / PROTEIN TRANSPORTER
AT3G56190	Predicted Affinity Capture-MS	FSW = 0.4335	Class C: plasma membrane	ALPHA-SNAP2 (ALPHA-SOLUBLE NSF ATTACHMENT PROTEIN 2) BINDING / SOLUBLE NSF ATTACHMENT PROTEIN
AT1G22780	Predicted Affinity Capture-MS	FSW = 0.5428	Class C: plasma membrane	PFL (POINTED FIRST LEAVES) RNA BINDING / NUCLEIC ACID BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G08710	Predicted Affinity Capture-MS	FSW = 0.1622	Class C: plasma membrane	ATH9 (THIOREDOXIN H-TYPE 9)
AT1G15210	Predicted Affinity Capture-MS	FSW = 0.5732	Class C: plasma membrane	PDR7 (PLEIOTROPIC DRUG RESISTANCE 7) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES
AT3G61430	Predicted Affinity Capture-Western	FSW = 0.1273	Class C: plasma membrane	PIP1A (PLASMA MEMBRANE INTRINSIC PROTEIN 1A) WATER CHANNEL
AT4G28950	Predicted Affinity Capture-MS	FSW = 0.1546	Class C: plasma membrane	ROP9 (RHO-RELATED PROTEIN FROM PLANTS 9) GTP BINDING
AT3G13560	Predicted Affinity Capture-MS	FSW = 0.1033	Class C: plasma membrane	GLYCOSYL HYDROLASE FAMILY 17 PROTEIN
AT3G55810	Predicted Affinity Capture-MS	FSW = 0.0678	Class C: plasma membrane	PYRUVATE KINASE PUTATIVE
AT5G56350	Predicted Affinity Capture-MS	FSW = 0.0107	Class C: plasma membrane	PYRUVATE KINASE PUTATIVE
AT4G36860	Predicted Affinity Capture-MS	FSW = 0.5254	Class C: plasma membrane	ZINC ION BINDING
AT5G62300	Predicted Affinity Capture-MS	FSW = 0.3640	Class C: plasma membrane	40S RIBOSOMAL PROTEIN S20 (RPS20C)
AT4G24400	Predicted Affinity Capture-MS	FSW = 0.4025	Class C: plasma membrane	CIPK8 (CBL-INTERACTING PROTEIN KINASE 8) KINASE/ PROTEIN KINASE
AT4G29360	Predicted Affinity Capture-MS	FSW = 0.0154	Class C: plasma membrane	GLYCOSYL HYDROLASE FAMILY 17 PROTEIN
AT3G03920	Predicted Affinity Capture-MS	FSW = 0.0206	Class C: nucleus	GAR1 RNA-BINDING REGION FAMILY PROTEIN
AT3G16950	Predicted Affinity Capture-MS	FSW = 0.5264	Class C: nucleus	LPD1 (LIPOAMIDE DEHYDROGENASE 1) DIHYDROLIPOYL DEHYDROGENASE
AT5G44500	Predicted Affinity Capture-MS	FSW = 0.4536	Class C: nucleus	SMALL NUCLEAR RIBONUCLEOPROTEIN ASSOCIATED PROTEIN B PUTATIVE / SNRNP-B PUTATIVE / SM PROTEIN B PUTATIVE
AT5G59870	Predicted Affinity Capture-MS	FSW = 0.5755	Class C: nucleus	HTA6 DNA BINDING
AT2G37470	Predicted Affinity Capture-MS	FSW = 0.4208	Class C: nucleus	HISTONE H2B PUTATIVE
AT3G08950	Predicted Affinity Capture-MS	FSW = 0.5836	Unknown	ELECTRON TRANSPORT SCO1/SENC FAMILY PROTEIN
AT2G19860	Predicted Affinity Capture-MS	FSW = 0.4567	Unknown	HXK2 (HEXOKINASE 2) ATP BINDING / FRUCTOKINASE/ GLUCOKINASE/ HEXOKINASE
AT2G04940	Predicted two hybrid	FSW = 0.0102	Unknown	SCRAMBLASE-RELATED
AT3G19980	Predicted Affinity Capture-MS	FSW = 0.4234	Unknown	ATFYPP3 (FLOWER-SPECIFIC PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE 3) PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE/ PROTEIN SERINE/THREONINE PHOSPHATASE
AT1G69740	Predicted Affinity Capture-MS	FSW = 0.0090	Unknown	HEMB1 CATALYTIC/ METAL ION BINDING / PORPHOBILINOGEN SYNTHASE
AT5G13050	Predicted Affinity Capture-MS	FSW = 0.5668	Unknown	5-FCL (5-FORMYLTETRAHYDROFOLATE CYCLOLIGASE) 5-FORMYLTETRAHYDROFOLATE CYCLO-LIGASE
AT3G06040	Predicted Affinity Capture-MS	FSW = 0.5831	Unknown	RIBOSOMAL PROTEIN L12 FAMILY PROTEIN
AT2G35690	Predicted Affinity Capture-MS	FSW = 0.4799	Unknown	ACX5 (ACYL-COA OXIDASE 5) FAD BINDING / ACYL-COA DEHYDROGENASE/ ACYL-COA OXIDASE/ ELECTRON CARRIER/ OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON THE CH-CH GROUP OF DONORS
AT4G30990	Predicted Affinity Capture-MS	FSW = 0.4760	Unknown	BINDING
AT2G13650	Predicted Affinity Capture-MS	FSW = 0.5024	Unknown	GONST1 (GOLGI NUCLEOTIDE SUGAR TRANSPORTER 1) GDP-MANNOSE TRANSMEMBRANE TRANSPORTER/ NUCLEOTIDE-SUGAR TRANSMEMBRANE TRANSPORTER
AT3G16050	Predicted Affinity Capture-MS	FSW = 0.2317	Unknown	A37 PROTEIN HETERODIMERIZATION
AT1G52300	Predicted Affinity Capture-MS	FSW = 0.0094	Unknown	60S RIBOSOMAL PROTEIN L37 (RPL37B)
AT3G52580	Predicted Affinity Capture-MS	FSW = 0.5725	Unknown	40S RIBOSOMAL PROTEIN S14 (RPS14C)
AT5G41480	Predicted Affinity Capture-MS	FSW = 0.5859	Unknown	GLA1 (GLOBULAR ARREST1) DIHYDROFOLATE SYNTHASE
AT3G12530	Predicted Affinity Capture-MS	FSW = 0.4793	Unknown	PSF2
AT5G47880	Predicted Affinity Capture-MS	FSW = 0.4802	Unknown	ERF1-1 (EUKARYOTIC RELEASE FACTOR 1-1) TRANSLATION RELEASE FACTOR
AT2G24040	Predicted Affinity Capture-MS	FSW = 0.6908	Unknown	HYDROPHOBIC PROTEIN PUTATIVE / LOW TEMPERATURE AND SALT RESPONSIVE PROTEIN PUTATIVE
AT3G03900	Predicted Affinity Capture-MS	FSW = 0.0240	Unknown	ADENYLYLSULFATE KINASE PUTATIVE
AT1G20696	Predicted Affinity Capture-MS	FSW = 0.4076	Unknown	HMGB3 (HIGH MOBILITY GROUP B 3) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR
AT1G20920	Predicted Affinity Capture-MS	FSW = 0.4304	Unknown	DEAD BOX RNA HELICASE PUTATIVE
AT1G26320	Predicted Synthetic Lethality	FSW = 0.0047	Unknown	NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE
AT1G51770	Predicted Affinity Capture-MS	FSW = 0.5934	Unknown	UNKNOWN PROTEIN
AT1G55730	Predicted Affinity Capture-MS	FSW = 0.4126	Unknown	ATCAX5 CALCIUMCATION ANTIPORTER/ CATIONCATION ANTIPORTER
AT1G62880	Predicted Affinity Capture-MS	FSW = 0.5953	Unknown	CORNICHON FAMILY PROTEIN
AT1G66240	Predicted Affinity Capture-MS	FSW = 0.0289	Unknown	ATX1 (ARABIDOPSIS HOMOLOG OF ANTI-OXIDANT 1) METAL ION BINDING
AT1G71280	Predicted Affinity Capture-MS	FSW = 0.5091	Unknown	DEAD/DEAH BOX HELICASE PUTATIVE
AT1G76720	Predicted Affinity Capture-MS	FSW = 0.5950	Unknown	GTP BINDING / GTPASE/ TRANSLATION INITIATION FACTOR
AT2G03667	Predicted Affinity Capture-MS	FSW = 0.4319	Unknown	ASPARAGINE SYNTHASE (GLUTAMINE-HYDROLYZING)
AT2G20290	Predicted Affinity Capture-MS	FSW = 0.0279	Unknown	XIG MOTOR/ PROTEIN BINDING
AT2G21250	Predicted Affinity Capture-MS	FSW = 0.4048	Unknown	MANNOSE 6-PHOSPHATE REDUCTASE (NADPH-DEPENDENT) PUTATIVE
AT2G29390	Predicted Affinity Capture-MS	FSW = 0.4461	Unknown	SMO2-2 (STEROL 4-ALPHA-METHYL-OXIDASE 2-2) 4-ALPHA-METHYL-DELTA7-STEROL-4ALPHA-METHYL OXIDASE/ C-4 METHYLSTEROL OXIDASE
AT2G46860	Predicted Affinity Capture-MS	FSW = 0.4657	Unknown	ATPPA3 (ARABIDOPSIS THALIANA PYROPHOSPHORYLASE 3) INORGANIC DIPHOSPHATASE/ PYROPHOSPHATASE
AT3G05960	Predicted Affinity Capture-MS	FSW = 0.4267	Unknown	STP6 (SUGAR TRANSPORTER 6) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ MONOSACCHARIDE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER
AT3G12690	Predicted Affinity Capture-MS	FSW = 0.5550	Unknown	AGC15 (AGC KINASE 15) KINASE
AT3G19940	Predicted Affinity Capture-MS	FSW = 0.4642	Unknown	SUGAR TRANSPORTER PUTATIVE
AT3G20650	Predicted Affinity Capture-MS	FSW = 0.4202	Unknown	MRNA CAPPING ENZYME FAMILY PROTEIN
AT3G23570	Predicted Affinity Capture-MS	FSW = 0.4955	Unknown	DIENELACTONE HYDROLASE FAMILY PROTEIN
AT3G45590	Predicted Affinity Capture-MS	FSW = 0.0406	Unknown	ATSEN1 (SPLICING ENDONUCLEASE 1) NUCLEASE/ NUCLEIC ACID BINDING / TRNA-INTRON ENDONUCLEASE
AT3G52390	Predicted Affinity Capture-MS	FSW = 0.5288	Unknown	TATD-RELATED DEOXYRIBONUCLEASE FAMILY PROTEIN
AT3G53510	Predicted Affinity Capture-MS	FSW = 0.3582	Unknown	ABC TRANSPORTER FAMILY PROTEIN
AT3G62770	Predicted Affinity Capture-MS	FSW = 0.4439	Unknown	ATATG18A
AT4G17770	Predicted Affinity Capture-MS	FSW = 0.5495	Unknown	ATTPS5 PROTEIN BINDING / TRANSFERASE TRANSFERRING GLYCOSYL GROUPS / TREHALOSE-PHOSPHATASE
AT4G26230	Predicted Affinity Capture-MS	FSW = 0.2764	Unknown	60S RIBOSOMAL PROTEIN L31 (RPL31B)
AT4G39330	Predicted Affinity Capture-MS	FSW = 0.5143	Unknown	CAD9 (CINNAMYL ALCOHOL DEHYDROGENASE 9) BINDING / CATALYTIC/ OXIDOREDUCTASE/ ZINC ION BINDING
AT5G09630	Predicted Affinity Capture-MS	FSW = 0.5145	Unknown	PROTEIN BINDING / ZINC ION BINDING
AT5G19820	Predicted Affinity Capture-MS	FSW = 0.3457	Unknown	EMB2734 (EMBRYO DEFECTIVE 2734) BINDING / LYASE
AT5G41190	Predicted Affinity Capture-MS	FSW = 0.4975	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NIN ONE BINDING (NOB1) ZN-RIBBON LIKE (INTERPROIPR014881) D-SITE 20S PRE-RRNA NUCLEASE (INTERPROIPR017117) HAS 855 BLAST HITS TO 653 PROTEINS IN 196 SPECIES ARCHAE - 53 BACTERIA - 16 METAZOA - 335 FUNGI - 168 PLANTS - 29 VIRUSES - 10 OTHER EUKARYOTES - 244 (SOURCE NCBI BLINK)
AT5G48710	Predicted Affinity Capture-MS	FSW = 0.0752	Unknown	UBIQUITIN-RELATED
AT5G54200	Predicted Affinity Capture-MS	FSW = 0.2961	Unknown	WD-40 REPEAT FAMILY PROTEIN
AT5G67380	Predicted Affinity Capture-MS	FSW = 0.1456	Unknown	CKA1 (CASEIN KINASE ALPHA 1) KINASE

Downloads

Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from

Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment

Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment

Class C: Same as Class A but the PPI is predicted

Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB

Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

Welcome to AtPIN

AtPIN will be upgraded. Please send your suggestions here

AT5G45420 - ( myb family transcription factor )

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Downloads

Fasta sequences:

Quick help

FSW

C3

PEP