Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G51770 - ( unknown protein )
101 Proteins interacs with AT1G51770| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT4G32470
   | PredictedAffinity Capture-MS | FSW = 0.7052
| Unknown | UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 14 KDA PROTEIN PUTATIVE |
| AT2G01250
| PredictedAffinity Capture-MS | FSW = 0.1047
| Unknown | 60S RIBOSOMAL PROTEIN L7 (RPL7B) |
| AT2G20450
| PredictedAffinity Capture-MS | FSW = 0.5345
| Unknown | 60S RIBOSOMAL PROTEIN L14 (RPL14A) |
| AT3G08710
| PredictedAffinity Capture-MS | FSW = 0.1865
| Unknown | ATH9 (THIOREDOXIN H-TYPE 9) |
| AT3G56190
| PredictedAffinity Capture-MS | FSW = 0.5006
| Unknown | ALPHA-SNAP2 (ALPHA-SOLUBLE NSF ATTACHMENT PROTEIN 2) BINDING / SOLUBLE NSF ATTACHMENT PROTEIN |
| AT3G62150
| PredictedAffinity Capture-MS | FSW = 0.1894
| Unknown | PGP21 (P-GLYCOPROTEIN 21) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
| AT1G22780
| PredictedAffinity Capture-MS | FSW = 0.7000
| Unknown | PFL (POINTED FIRST LEAVES) RNA BINDING / NUCLEIC ACID BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT1G07930 | PredictedAffinity Capture-MS | FSW = 0.6944
| Unknown | ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA |
| AT3G62870
| Predictedtwo hybridsynthetic growth defect | FSW = 0.0579
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
| AT3G08950
| PredictedAffinity Capture-MS | FSW = 0.6658
| Unknown | ELECTRON TRANSPORT SCO1/SENC FAMILY PROTEIN |
| AT2G19860
| PredictedAffinity Capture-MS | FSW = 0.6710
| Unknown | HXK2 (HEXOKINASE 2) ATP BINDING / FRUCTOKINASE/ GLUCOKINASE/ HEXOKINASE |
| AT3G19980
| PredictedAffinity Capture-MS | FSW = 0.5828
| Unknown | ATFYPP3 (FLOWER-SPECIFIC PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE 3) PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE/ PROTEIN SERINE/THREONINE PHOSPHATASE |
| AT1G07890
| PredictedAffinity Capture-MS | FSW = 0.0533
| Unknown | APX1 (ASCORBATE PEROXIDASE 1) L-ASCORBATE PEROXIDASE |
| AT1G15210
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.7223
| Unknown | PDR7 (PLEIOTROPIC DRUG RESISTANCE 7) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
| AT1G65240
| PredictedAffinity Capture-MS | FSW = 0.1846
| Unknown | ASPARTYL PROTEASE FAMILY PROTEIN |
| AT3G16950
| PredictedAffinity Capture-MS | FSW = 0.6324
| Unknown | LPD1 (LIPOAMIDE DEHYDROGENASE 1) DIHYDROLIPOYL DEHYDROGENASE |
| AT3G55400
| PredictedPhenotypic Enhancement | FSW = 0.0125
| Unknown | OVA1 (OVULE ABORTION 1) ATP BINDING / AMINOACYL-TRNA LIGASE/ METHIONINE-TRNA LIGASE/ NUCLEOTIDE BINDING |
| AT2G31170
| PredictedAffinity Capture-MS | FSW = 0.1920
| Unknown | SYCO ARATH ATP BINDING / AMINOACYL-TRNA LIGASE/ CYSTEINE-TRNA LIGASE/ NUCLEOTIDE BINDING |
| AT4G26970
| PredictedAffinity Capture-MS | FSW = 0.2122
| Unknown | ACONITATE HYDRATASE/ COPPER ION BINDING |
| AT5G13050
| PredictedAffinity Capture-MS | FSW = 0.6545
| Unknown | 5-FCL (5-FORMYLTETRAHYDROFOLATE CYCLOLIGASE) 5-FORMYLTETRAHYDROFOLATE CYCLO-LIGASE |
| AT1G80030
| PredictedAffinity Capture-MS | FSW = 0.1056
| Unknown | DNAJ HEAT SHOCK PROTEIN PUTATIVE |
| AT3G11630
| PredictedAffinity Capture-MS | FSW = 0.3735
| Unknown | 2-CYS PEROXIREDOXIN CHLOROPLAST (BAS1) |
| AT3G06040
| PredictedAffinity Capture-MS | FSW = 0.6092
| Unknown | RIBOSOMAL PROTEIN L12 FAMILY PROTEIN |
| AT5G60390
| PredictedAffinity Capture-MS | FSW = 0.5115
| Unknown | ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA |
| AT5G45420
| PredictedAffinity Capture-MS | FSW = 0.5934
| Unknown | MYB FAMILY TRANSCRIPTION FACTOR |
| AT5G23740
| PredictedAffinity Capture-MS | FSW = 0.5965
| Unknown | RPS11-BETA (RIBOSOMAL PROTEIN S11-BETA) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT1G27970
| PredictedAffinity Capture-MS | FSW = 0.6223
| Unknown | NTF2B (NUCLEAR TRANSPORT FACTOR 2B) RAN GTPASE BINDING / PROTEIN TRANSPORTER |
| AT2G21540
| PredictedAffinity Capture-MS | FSW = 0.1709
| Unknown | SFH3 (SEC14-LIKE 3) PHOSPHATIDYLINOSITOL TRANSPORTER |
| AT3G13560
| PredictedAffinity Capture-MS | FSW = 0.1438
| Unknown | GLYCOSYL HYDROLASE FAMILY 17 PROTEIN |
| AT3G55810
| PredictedAffinity Capture-MS | FSW = 0.0595
| Unknown | PYRUVATE KINASE PUTATIVE |
| AT5G62300
| PredictedAffinity Capture-MS | FSW = 0.4697
| Unknown | 40S RIBOSOMAL PROTEIN S20 (RPS20C) |
| AT1G50310
| PredictedAffinity Capture-MS | FSW = 0.3396
| Unknown | STP9 (SUGAR TRANSPORTER 9) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
| AT5G43370
| PredictedAffinity Capture-MS | FSW = 0.6536
| Unknown | APT1 (ARABIDOPSIS PHOSPHATE TRANSPORTER 1) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ INORGANIC PHOSPHATE TRANSMEMBRANE TRANSPORTER/ PHOSPHATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
| AT1G22300
| PredictedAffinity Capture-MS | FSW = 0.2082
| Unknown | GRF10 (GENERAL REGULATORY FACTOR 10) ATP BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
| AT3G02870
| PredictedAffinity Capture-MS | FSW = 0.0476
| Unknown | VTC4 3(2)5-BISPHOSPHATE NUCLEOTIDASE/ L-GALACTOSE-1-PHOSPHATE PHOSPHATASE/ INOSITOL OR PHOSPHATIDYLINOSITOL PHOSPHATASE/ INOSITOL-1(OR 4)-MONOPHOSPHATASE |
| AT4G24400
| PredictedAffinity Capture-MS | FSW = 0.4027
| Unknown | CIPK8 (CBL-INTERACTING PROTEIN KINASE 8) KINASE/ PROTEIN KINASE |
| AT5G12350
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1240
| Unknown | RAN GTPASE BINDING / CHROMATIN BINDING / ZINC ION BINDING |
| AT4G36860
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.7455
| Unknown | ZINC ION BINDING |
| AT1G09640
| PredictedAffinity Capture-MS | FSW = 0.5705
| Unknown | ELONGATION FACTOR 1B-GAMMA PUTATIVE / EEF-1B GAMMA PUTATIVE |
| AT2G35690
| PredictedAffinity Capture-MS | FSW = 0.5458
| Unknown | ACX5 (ACYL-COA OXIDASE 5) FAD BINDING / ACYL-COA DEHYDROGENASE/ ACYL-COA OXIDASE/ ELECTRON CARRIER/ OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON THE CH-CH GROUP OF DONORS |
| AT3G50670
| PredictedAffinity Capture-MS | FSW = 0.0132
| Unknown | U1-70K (U1 SMALL NUCLEAR RIBONUCLEOPROTEIN-70K) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
| AT3G13445
| PredictedAffinity Capture-MS | FSW = 0.1836
| Unknown | TBP1 (TATA BINDING PROTEIN 1) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ BINDING |
| AT5G59870
| PredictedAffinity Capture-MS | FSW = 0.6997
| Unknown | HTA6 DNA BINDING |
| AT5G44500
| PredictedAffinity Capture-MS | FSW = 0.5916
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN ASSOCIATED PROTEIN B PUTATIVE / SNRNP-B PUTATIVE / SM PROTEIN B PUTATIVE |
| AT2G37470
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.5368
| Unknown | HISTONE H2B PUTATIVE |
| AT1G72480
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.5140
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN GOLGI APPARATUS EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TRANSMEMBRANE RECEPTOR EUKARYOTA (INTERPROIPR009637) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G010701) HAS 422 BLAST HITS TO 420 PROTEINS IN 121 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 208 FUNGI - 101 PLANTS - 83 VIRUSES - 0 OTHER EUKARYOTES - 30 (SOURCE NCBI BLINK) |
| AT2G13650
| PredictedAffinity Capture-MS | FSW = 0.6257
| Unknown | GONST1 (GOLGI NUCLEOTIDE SUGAR TRANSPORTER 1) GDP-MANNOSE TRANSMEMBRANE TRANSPORTER/ NUCLEOTIDE-SUGAR TRANSMEMBRANE TRANSPORTER |
| AT4G30990
| PredictedAffinity Capture-MS | FSW = 0.4587
| Unknown | BINDING |
| AT3G08730
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1739
| Unknown | PK1 (PROTEIN-SERINE KINASE 1) KINASE/ PROTEIN BINDING / PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
| AT3G16050
| PredictedAffinity Capture-MS | FSW = 0.3499
| Unknown | A37 PROTEIN HETERODIMERIZATION |
| AT3G52580
| PredictedAffinity Capture-MS | FSW = 0.6771
| Unknown | 40S RIBOSOMAL PROTEIN S14 (RPS14C) |
| AT5G41480
| PredictedAffinity Capture-MS | FSW = 0.6101
| Unknown | GLA1 (GLOBULAR ARREST1) DIHYDROFOLATE SYNTHASE |
| AT2G24040
| PredictedAffinity Capture-MS | FSW = 0.7351
| Unknown | HYDROPHOBIC PROTEIN PUTATIVE / LOW TEMPERATURE AND SALT RESPONSIVE PROTEIN PUTATIVE |
| AT3G12530
| PredictedAffinity Capture-MS | FSW = 0.5292
| Unknown | PSF2 |
| AT3G22880
| PredictedAffinity Capture-MS | FSW = 0.1542
| Unknown | DMC1 (DISRUPTION OF MEIOTIC CONTROL 1) ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
| AT5G47880
| PredictedAffinity Capture-MS | FSW = 0.6395
| Unknown | ERF1-1 (EUKARYOTIC RELEASE FACTOR 1-1) TRANSLATION RELEASE FACTOR |
| AT1G06360
| Predictedtwo hybrid | FSW = 0.0377
| Unknown | FATTY ACID DESATURASE FAMILY PROTEIN |
| AT1G11530
| PredictedAffinity Capture-MS | FSW = 0.5663
| Unknown | ATCXXS1 (C-TERMINAL CYSTEINE RESIDUE IS CHANGED TO A SERINE 1) PROTEIN DISULFIDE ISOMERASE |
| AT1G20696
| PredictedAffinity Capture-MS | FSW = 0.5614
| Unknown | HMGB3 (HIGH MOBILITY GROUP B 3) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR |
| AT1G33110
| PredictedAffinity Capture-MS | FSW = 0.5908
| Unknown | MATE EFFLUX FAMILY PROTEIN |
| AT1G34580
| PredictedAffinity Capture-MS | FSW = 0.2045
| Unknown | MONOSACCHARIDE TRANSPORTER PUTATIVE |
| AT1G53900
| PredictedAffinity Capture-MS | FSW = 0.1350
| Unknown | GTP BINDING / TRANSLATION INITIATION FACTOR |
| AT1G55730
| PredictedAffinity Capture-MS | FSW = 0.4153
| Unknown | ATCAX5 CALCIUMCATION ANTIPORTER/ CATIONCATION ANTIPORTER |
| AT1G64480
| PredictedAffinity Capture-MS | FSW = 0.6856
| Unknown | CBL8 (CALCINEURIN B-LIKE PROTEIN 8) CALCIUM ION BINDING |
| AT1G71280
| PredictedAffinity Capture-MS | FSW = 0.6187
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
| AT1G76720
| PredictedAffinity Capture-MS | FSW = 0.6904
| Unknown | GTP BINDING / GTPASE/ TRANSLATION INITIATION FACTOR |
| AT2G03040
| PredictedAffinity Capture-MS | FSW = 0.0891
| Unknown | TRANSMEMBRANE PROTEIN-RELATED |
| AT2G21250
| PredictedAffinity Capture-MS | FSW = 0.3762
| Unknown | MANNOSE 6-PHOSPHATE REDUCTASE (NADPH-DEPENDENT) PUTATIVE |
| AT2G35390
| PredictedAffinity Capture-MS | FSW = 0.2136
| Unknown | RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 1 / PHOSPHORIBOSYL DIPHOSPHATE SYNTHETASE 1 (PRSI) |
| AT3G05540
| PredictedAffinity Capture-MS | FSW = 0.2489
| Unknown | INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CYTOPLASM CONTAINS INTERPRO DOMAIN/S TRANSLATIONALLY CONTROLLED TUMOUR PROTEIN (INTERPROIPR018105) TRANSLATIONALLY CONTROLLED TUMOUR-ASSOCIATED TCTP (INTERPROIPR001983) MSS4/TRANSLATIONALLY CONTROLLED TUMOUR-ASSOCIATED TCTP (INTERPROIPR011323) TRANSLATIONALLY CONTROLLED TUMOUR PROTEIN CONSERVED SITE (INTERPROIPR018103) MSS4-LIKE (INTERPROIPR011057) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS TCTP (TRANSLATIONALLY CONTROLLED TUMOR PROTEIN) (TAIRAT3G166401) HAS 640 BLAST HITS TO 640 PROTEINS IN 231 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 343 FUNGI - 110 PLANTS - 105 VIRUSES - 0 OTHER EUKARYOTES - 82 (SOURCE NCBI BLINK) |
| AT3G05960
| PredictedAffinity Capture-MS | FSW = 0.4833
| Unknown | STP6 (SUGAR TRANSPORTER 6) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ MONOSACCHARIDE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
| AT3G12690
| PredictedAffinity Capture-MS | FSW = 0.7294
| Unknown | AGC15 (AGC KINASE 15) KINASE |
| AT3G19940
| PredictedAffinity Capture-MS | FSW = 0.5622
| Unknown | SUGAR TRANSPORTER PUTATIVE |
| AT3G20650
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.5342
| Unknown | MRNA CAPPING ENZYME FAMILY PROTEIN |
| AT3G23570
| PredictedAffinity Capture-MS | FSW = 0.4871
| Unknown | DIENELACTONE HYDROLASE FAMILY PROTEIN |
| AT3G30842
| PredictedAffinity Capture-MS | FSW = 0.5794
| Unknown | PDR10 (PLEIOTROPIC DRUG RESISTANCE 10) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
| AT3G52390
| PredictedAffinity Capture-MS | FSW = 0.5881
| Unknown | TATD-RELATED DEOXYRIBONUCLEASE FAMILY PROTEIN |
| AT3G53510
| PredictedAffinity Capture-MS | FSW = 0.3736
| Unknown | ABC TRANSPORTER FAMILY PROTEIN |
| AT4G17770
| PredictedAffinity Capture-MS | FSW = 0.6682
| Unknown | ATTPS5 PROTEIN BINDING / TRANSFERASE TRANSFERRING GLYCOSYL GROUPS / TREHALOSE-PHOSPHATASE |
| AT4G26230
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4042
| Unknown | 60S RIBOSOMAL PROTEIN L31 (RPL31B) |
| AT4G33070
| PredictedAffinity Capture-MS | FSW = 0.1054
| Unknown | PYRUVATE DECARBOXYLASE PUTATIVE |
| AT5G09390
| PredictedAffinity Capture-MS | FSW = 0.4286
| Unknown | CD2-BINDING PROTEIN-RELATED |
| AT5G09630
| PredictedAffinity Capture-MS | FSW = 0.6260
| Unknown | PROTEIN BINDING / ZINC ION BINDING |
| AT5G19660
| PredictedAffinity Capture-MS | FSW = 0.5928
| Unknown | S1P (SITE-1 PROTEASE) ENDOPEPTIDASE/ SERINE-TYPE ENDOPEPTIDASE |
| AT5G41190
| PredictedAffinity Capture-MS | FSW = 0.5595
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NIN ONE BINDING (NOB1) ZN-RIBBON LIKE (INTERPROIPR014881) D-SITE 20S PRE-RRNA NUCLEASE (INTERPROIPR017117) HAS 855 BLAST HITS TO 653 PROTEINS IN 196 SPECIES ARCHAE - 53 BACTERIA - 16 METAZOA - 335 FUNGI - 168 PLANTS - 29 VIRUSES - 10 OTHER EUKARYOTES - 244 (SOURCE NCBI BLINK) |
| AT1G59730
| PredictedAffinity Capture-MS | FSW = 0.1808
| Unknown | ATH7 (THIOREDOXIN H-TYPE 7) |
| AT1G62880
| PredictedAffinity Capture-MS | FSW = 0.7236
| Unknown | CORNICHON FAMILY PROTEIN |
| AT2G03667
| PredictedAffinity Capture-MS | FSW = 0.5061
| Unknown | ASPARAGINE SYNTHASE (GLUTAMINE-HYDROLYZING) |
| AT2G17620
| PredictedAffinity Capture-MS | FSW = 0.3252
| Unknown | CYCB21 (CYCLIN B21) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
| AT2G19910
| PredictedAffinity Capture-MS | FSW = 0.3093
| Unknown | RNA-DEPENDENT RNA POLYMERASE FAMILY PROTEIN |
| AT2G29390
| PredictedAffinity Capture-MS | FSW = 0.5395
| Unknown | SMO2-2 (STEROL 4-ALPHA-METHYL-OXIDASE 2-2) 4-ALPHA-METHYL-DELTA7-STEROL-4ALPHA-METHYL OXIDASE/ C-4 METHYLSTEROL OXIDASE |
| AT2G42160
| PredictedAffinity Capture-MS | FSW = 0.2512
| Unknown | ZINC FINGER (UBIQUITIN-HYDROLASE) DOMAIN-CONTAINING PROTEIN |
| AT2G43360
| PredictedAffinity Capture-MS | FSW = 0.2908
| Unknown | BIO2 (BIOTIN AUXOTROPH 2) BIOTIN SYNTHASE |
| AT2G46860
| PredictedAffinity Capture-MS | FSW = 0.6928
| Unknown | ATPPA3 (ARABIDOPSIS THALIANA PYROPHOSPHORYLASE 3) INORGANIC DIPHOSPHATASE/ PYROPHOSPHATASE |
| AT3G62770
| PredictedAffinity Capture-MS | FSW = 0.4596
| Unknown | ATATG18A |
| AT4G25860
| PredictedAffinity Capture-MS | FSW = 0.5708
| Unknown | ORP4A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 4A) OXYSTEROL BINDING |
| AT4G26810
| PredictedAffinity Capture-MS | FSW = 0.2296
| Unknown | SWIB COMPLEX BAF60B DOMAIN-CONTAINING PROTEIN |
| AT4G39330
| PredictedAffinity Capture-MS | FSW = 0.5711
| Unknown | CAD9 (CINNAMYL ALCOHOL DEHYDROGENASE 9) BINDING / CATALYTIC/ OXIDOREDUCTASE/ ZINC ION BINDING |
| AT5G19820
| PredictedAffinity Capture-MS | FSW = 0.4980
| Unknown | EMB2734 (EMBRYO DEFECTIVE 2734) BINDING / LYASE |
| AT5G57330
| PredictedAffinity Capture-MS | FSW = 0.1469
| Unknown | ALDOSE 1-EPIMERASE FAMILY PROTEIN |
| AT5G59490
| PredictedAffinity Capture-MS | FSW = 0.0178
| Unknown | HALOACID DEHALOGENASE-LIKE HYDROLASE FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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