Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Welcome to AtPIN
AtPIN will be upgraded. Please send your suggestions here
AT3G02870 - ( VTC4 3(2)5-bisphosphate nucleotidase/ L-galactose-1-phosphate phosphatase/ inositol or phosphatidylinositol phosphatase/ inositol-1(or 4)-monophosphatase )
21 Proteins interacs with AT3G02870Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G20520 | Predictedpull down | FSW = 0.0334
| Class C:plasma membrane | WAV2 (WAVY GROWTH 2) |
AT4G17260 | Predictedtwo hybrid | FSW = 0.0368
| Class C:plasma membrane | L-LACTATE DEHYDROGENASE PUTATIVE |
AT5G52640 | Predictedsynthetic growth defect | FSW = 0.0034
| Class C:plasma membrane | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT4G36860 | PredictedAffinity Capture-MS | FSW = 0.0598
| Class C:plasma membrane | ZINC ION BINDING |
AT5G24780 | PredictedAffinity Capture-MS | FSW = 0.2193
| Unknown | VSP1 (VEGETATIVE STORAGE PROTEIN 1) ACID PHOSPHATASE/ TRANSCRIPTION FACTOR BINDING |
AT2G19860 | PredictedAffinity Capture-MS | FSW = 0.0706
| Unknown | HXK2 (HEXOKINASE 2) ATP BINDING / FRUCTOKINASE/ GLUCOKINASE/ HEXOKINASE |
AT1G19660 | PredictedSynthetic Lethality | FSW = 0.0144
| Unknown | WOUND-RESPONSIVE FAMILY PROTEIN |
ATCG00380 | Predictedpull down | FSW = 0.0200
| Unknown | CHLOROPLAST ENCODED RIBOSOMAL PROTEIN S4 |
AT2G47640 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1486
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN D2 PUTATIVE / SNRNP CORE PROTEIN D2 PUTATIVE / SM PROTEIN D2 PUTATIVE |
AT4G29390 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1230
| Unknown | 40S RIBOSOMAL PROTEIN S30 (RPS30B) |
AT2G20060 | Predictedpull down | FSW = 0.0178
| Unknown | RIBOSOMAL PROTEIN L4 FAMILY PROTEIN |
AT1G24706 | PredictedAffinity Capture-MS | FSW = 0.0886
| Unknown | UNKNOWN PROTEIN |
AT1G51770 | PredictedAffinity Capture-MS | FSW = 0.0476
| Unknown | UNKNOWN PROTEIN |
AT1G63660 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1812
| Unknown | GMP SYNTHASE (GLUTAMINE-HYDROLYZING) PUTATIVE / GLUTAMINE AMIDOTRANSFERASE PUTATIVE |
AT2G03410 | PredictedAffinity Capture-MS | FSW = 0.2871
| Unknown | MO25 FAMILY PROTEIN |
AT2G43360 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2135
| Unknown | BIO2 (BIOTIN AUXOTROPH 2) BIOTIN SYNTHASE |
AT2G47790 | PredictedAffinity Capture-MS | FSW = 0.1333
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT3G59410 | PredictedAffinity Capture-MS | FSW = 0.1279
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT3G30842 | PredictedAffinity Capture-MS | FSW = 0.0857
| Unknown | PDR10 (PLEIOTROPIC DRUG RESISTANCE 10) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT3G52560 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2323
| Unknown | UEV1D-4 (UBIQUITIN E2 VARIANT 1D-4) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT1G13700 | Predictedtwo hybrid | FSW = 0.0741
| Unknown | GLUCOSAMINE/GALACTOSAMINE-6-PHOSPHATE ISOMERASE FAMILY PROTEIN |
Downloads
Quick help
Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454