Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G59410 - ( protein kinase family protein )
137 Proteins interacs with AT3G59410Locus | Method | FSW ![]() | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G01280![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0955
| Unknown | VDAC1 (VOLTAGE DEPENDENT ANION CHANNEL 1) VOLTAGE-GATED ANION CHANNEL |
AT4G32470![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.1777
| Unknown | UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 14 KDA PROTEIN PUTATIVE |
AT2G01250![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.2084
| Unknown | 60S RIBOSOMAL PROTEIN L7 (RPL7B) |
AT3G12580![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0837
| Unknown | HSP70 (HEAT SHOCK PROTEIN 70) ATP BINDING |
AT2G20450![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2732
| Unknown | 60S RIBOSOMAL PROTEIN L14 (RPL14A) |
AT2G34480![]() ![]() ![]() ![]() | PredictedAffinity Capture-Westernco-fractionationCo-fractionation | FSW = 0.0220
| Unknown | 60S RIBOSOMAL PROTEIN L18A (RPL18AB) |
AT5G24780![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3725
| Unknown | VSP1 (VEGETATIVE STORAGE PROTEIN 1) ACID PHOSPHATASE/ TRANSCRIPTION FACTOR BINDING |
AT1G64790 | Predictedtwo hybridtwo hybridReconstituted ComplexReconstituted Complexinterologs mappinginterologs mappingAffinity Capture-Western | FSW = 0.0048
| Unknown | BINDING |
AT5G03240 | PredictedAffinity Capture-MS | FSW = 0.0060
| Unknown | UBQ3 (POLYUBIQUITIN 3) PROTEIN BINDING |
AT2G29990![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4280
| Unknown | NDA2 (ALTERNATIVE NAD(P)H DEHYDROGENASE 2) FAD BINDING / NADH DEHYDROGENASE/ OXIDOREDUCTASE |
AT1G20960![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0204
| Unknown | EMB1507 (EMBRYO DEFECTIVE 1507) ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT2G19860![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2245
| Unknown | HXK2 (HEXOKINASE 2) ATP BINDING / FRUCTOKINASE/ GLUCOKINASE/ HEXOKINASE |
AT1G18540![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0492
| Unknown | 60S RIBOSOMAL PROTEIN L6 (RPL6A) |
AT1G15210![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2022
| Unknown | PDR7 (PLEIOTROPIC DRUG RESISTANCE 7) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
AT1G18080![]() ![]() ![]() ![]() | PredictedSynthetic Rescue | FSW = 0.0106
| Unknown | ATARCA NUCLEOTIDE BINDING |
AT5G24400![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1989
| Unknown | EMB2024 (EMBRYO DEFECTIVE 2024) 6-PHOSPHOGLUCONOLACTONASE/ CATALYTIC |
AT2G39290![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0717
| Unknown | PGP1 (PHOSPHATIDYLGLYCEROLPHOSPHATE SYNTHASE 1) CDP-ALCOHOL PHOSPHATIDYLTRANSFERASE/ CDP-DIACYLGLYCEROL-GLYCEROL-3-PHOSPHATE 3-PHOSPHATIDYLTRANSFERASE |
AT4G26970![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4265
| Unknown | ACONITATE HYDRATASE/ COPPER ION BINDING |
AT1G80070![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0179
| Unknown | SUS2 (ABNORMAL SUSPENSOR 2) |
AT3G11630![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0654
| Unknown | 2-CYS PEROXIREDOXIN CHLOROPLAST (BAS1) |
AT1G51040![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.1301
| Unknown | PHOSPHATIDYLINOSITOL 4-KINASE PUTATIVE |
AT5G15450![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0112
| Unknown | CLPB3 (CASEIN LYTIC PROTEINASE B3) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT5G61410![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0215
| Unknown | RPE CATALYTIC/ RIBULOSE-PHOSPHATE 3-EPIMERASE |
AT4G23430![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3350
| Unknown | SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN |
AT5G63980![]() ![]() ![]() ![]() | PredictedSynthetic Rescue | FSW = 0.0140
| Unknown | SAL1 3(2)5-BISPHOSPHATE NUCLEOTIDASE/ INOSITOL OR PHOSPHATIDYLINOSITOL PHOSPHATASE |
AT5G60390![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.1512
| Unknown | ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA |
AT1G75840![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2276
| Unknown | ARAC5 (RAC-LIKE GTP BINDING PROTEIN 5) GTP BINDING / GTPASE |
AT1G27970![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3375
| Unknown | NTF2B (NUCLEAR TRANSPORT FACTOR 2B) RAN GTPASE BINDING / PROTEIN TRANSPORTER |
AT2G21540![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4434
| Unknown | SFH3 (SEC14-LIKE 3) PHOSPHATIDYLINOSITOL TRANSPORTER |
AT1G75170![]() ![]() ![]() ![]() | PredictedCo-purification | FSW = 0.0351
| Unknown | SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLYCERIDE TRANSFER FAMILY PROTEIN |
AT5G52640![]() ![]() ![]() ![]() | PredictedAffinity Capture-Westerntwo hybridinteraction prediction | FSW = 0.0113
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT5G23900![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0654
| Unknown | 60S RIBOSOMAL PROTEIN L13 (RPL13D) |
AT1G13320![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0920
| Unknown | PP2AA3 (PROTEIN PHOSPHATASE 2A SUBUNIT A3) BINDING / PROTEIN PHOSPHATASE TYPE 2A REGULATOR |
AT3G02870![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.1279
| Unknown | VTC4 3(2)5-BISPHOSPHATE NUCLEOTIDASE/ L-GALACTOSE-1-PHOSPHATE PHOSPHATASE/ INOSITOL OR PHOSPHATIDYLINOSITOL PHOSPHATASE/ INOSITOL-1(OR 4)-MONOPHOSPHATASE |
AT4G22120![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3901
| Unknown | EARLY-RESPONSIVE TO DEHYDRATION PROTEIN-RELATED / ERD PROTEIN-RELATED |
AT1G77210![]() ![]() ![]() ![]() | PredictedAffinity Capture-Western | FSW = 0.0215
| Unknown | SUGAR TRANSPORTER PUTATIVE |
AT1G20760![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0614
| Unknown | CALCIUM-BINDING EF HAND FAMILY PROTEIN |
AT1G70490 | PredictedAffinity Capture-MS | FSW = 0.2061
| Unknown | ARFA1D GTP BINDING / PHOSPHOLIPASE ACTIVATOR/ PROTEIN BINDING |
AT1G09640![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.1794
| Unknown | ELONGATION FACTOR 1B-GAMMA PUTATIVE / EEF-1B GAMMA PUTATIVE |
AT2G07640![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0833
| Unknown | D2D4-DIENOYL-COA REDUCTASE-RELATED |
AT2G31660 | Predictedtwo hybrid | FSW = 0.0179
| Unknown | SAD2 (SUPER SENSITIVE TO ABA AND DROUGHT2) BINDING / PROTEIN TRANSPORTER |
AT5G57015![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0133
| Unknown | CKL12 (CASEIN KINASE I-LIKE 12) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT1G03930![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0176
| Unknown | ADK1 (DUAL SPECIFICITY KINASE 1) KINASE/ PROTEIN SERINE/THREONINE/TYROSINE KINASE |
AT4G16830![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0015
| Unknown | NUCLEAR RNA-BINDING PROTEIN (RGGA) |
AT2G47640![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2159
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN D2 PUTATIVE / SNRNP CORE PROTEIN D2 PUTATIVE / SM PROTEIN D2 PUTATIVE |
AT4G26600![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0791
| Unknown | NUCLEOLAR PROTEIN PUTATIVE |
AT2G41500![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0347
| Unknown | EMB2776 NUCLEOTIDE BINDING |
AT5G37720![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0185
| Unknown | RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE |
AT4G29390 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0646
| Unknown | 40S RIBOSOMAL PROTEIN S30 (RPS30B) |
AT3G18130![]() ![]() ![]() ![]() | PredictedSynthetic RescuePhenotypic Suppression | FSW = 0.0119
| Unknown | RACK1C_AT (RECEPTOR FOR ACTIVATED C KINASE 1 C) NUCLEOTIDE BINDING |
AT2G40290![]() ![]() ![]() ![]() | PredictedSynthetic Rescuesynthetic growth defect | FSW = 0.0666
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 1 PUTATIVE / EIF-2A PUTATIVE / EIF-2-ALPHA PUTATIVE |
AT4G08350![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0047
| Unknown | GTA2 (GLOBAL TRANSCRIPTION FACTOR GROUP A2) STRUCTURAL CONSTITUENT OF RIBOSOME / TRANSCRIPTION ELONGATION REGULATOR/ TRANSCRIPTION FACTOR |
AT2G34210![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0071
| Unknown | STRUCTURAL CONSTITUENT OF RIBOSOME / TRANSCRIPTION ELONGATION REGULATOR/ TRANSCRIPTION INITIATION FACTOR |
AT5G20160![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0050
| Unknown | RIBOSOMAL PROTEIN L7AE/L30E/S12E/GADD45 FAMILY PROTEIN |
AT2G39795![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.1517
| Unknown | MITOCHONDRIAL GLYCOPROTEIN FAMILY PROTEIN / MAM33 FAMILY PROTEIN |
AT3G61530![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0318
| Unknown | PANB2 3-METHYL-2-OXOBUTANOATE HYDROXYMETHYLTRANSFERASE |
AT3G10920![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3523
| Unknown | MSD1 (MANGANESE SUPEROXIDE DISMUTASE 1) METAL ION BINDING / SUPEROXIDE DISMUTASE |
AT1G72480![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.2295
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN GOLGI APPARATUS EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TRANSMEMBRANE RECEPTOR EUKARYOTA (INTERPROIPR009637) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G010701) HAS 422 BLAST HITS TO 420 PROTEINS IN 121 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 208 FUNGI - 101 PLANTS - 83 VIRUSES - 0 OTHER EUKARYOTES - 30 (SOURCE NCBI BLINK) |
AT2G13650![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.1221
| Unknown | GONST1 (GOLGI NUCLEOTIDE SUGAR TRANSPORTER 1) GDP-MANNOSE TRANSMEMBRANE TRANSPORTER/ NUCLEOTIDE-SUGAR TRANSMEMBRANE TRANSPORTER |
AT5G57625![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3696
| Unknown | ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN |
AT4G33710![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2083
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT5G47720![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0735
| Unknown | ACETYL-COA C-ACYLTRANSFERASE PUTATIVE / 3-KETOACYL-COA THIOLASE PUTATIVE |
AT3G08730![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2052
| Unknown | PK1 (PROTEIN-SERINE KINASE 1) KINASE/ PROTEIN BINDING / PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT3G16050![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4959
| Unknown | A37 PROTEIN HETERODIMERIZATION |
AT2G46520![]() ![]() ![]() ![]() | Predictedtwo hybridtwo hybrid | FSW = 0.0052
| Unknown | CELLULAR APOPTOSIS SUSCEPTIBILITY PROTEIN PUTATIVE / IMPORTIN-ALPHA RE-EXPORTER PUTATIVE |
AT3G11710![]() ![]() ![]() ![]() | PredictedSynthetic RescuePhenotypic Enhancement | FSW = 0.0215
| Unknown | ATKRS-1 (ARABIDOPSIS THALIANA LYSYL-TRNA SYNTHETASE 1) ATP BINDING / AMINOACYL-TRNA LIGASE/ LYSINE-TRNA LIGASE/ NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT4G17190![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0622
| Unknown | FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) DIMETHYLALLYLTRANSTRANSFERASE/ GERANYLTRANSTRANSFERASE |
AT1G01140![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0225
| Unknown | CIPK9 (CBL-INTERACTING PROTEIN KINASE 9) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT1G04170![]() ![]() ![]() ![]() | PredictedPhenotypic Suppression | FSW = 0.0283
| Unknown | EIF2 GAMMA TRANSLATION FACTOR NUCLEIC ACID BINDING / TRANSLATION INITIATION FACTOR |
AT1G20696![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.1587
| Unknown | HMGB3 (HIGH MOBILITY GROUP B 3) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR |
AT1G24706![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3823
| Unknown | UNKNOWN PROTEIN |
AT1G27840![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0095
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT1G43080![]() ![]() ![]() ![]() | PredictedAffinity Capture-Westernco-fractionationCo-fractionation | FSW = 0.0386
| Unknown | GLYCOSIDE HYDROLASE FAMILY 28 PROTEIN / POLYGALACTURONASE (PECTINASE) FAMILY PROTEIN |
AT1G48970![]() ![]() ![]() ![]() | PredictedSynthetic RescuePhenotypic SuppressionPhenotypic Suppressioninterologs mapping | FSW = 0.0676
| Unknown | GTP BINDING / TRANSLATION INITIATION FACTOR |
AT1G53880 | PredictedPhenotypic SuppressionPhenotypic Enhancementinterologs mappinginterologs mappinginterologs mapping | FSW = 0.0602
| Unknown | GTP BINDING / TRANSLATION INITIATION FACTOR |
AT1G58520![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3907
| Unknown | HYDROLASE ACTING ON ESTER BONDS / LIPASE |
AT1G60170![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0260
| Unknown | EMB1220 (EMBRYO DEFECTIVE 1220) |
AT1G63660![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.2171
| Unknown | GMP SYNTHASE (GLUTAMINE-HYDROLYZING) PUTATIVE / GLUTAMINE AMIDOTRANSFERASE PUTATIVE |
AT1G64480![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.1930
| Unknown | CBL8 (CALCINEURIN B-LIKE PROTEIN 8) CALCIUM ION BINDING |
AT1G64550![]() ![]() ![]() ![]() | PredictedReconstituted Complexinterologs mappingAffinity Capture-Western | FSW = 0.0052
| Unknown | ATGCN3 TRANSPORTER |
AT1G66510![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0563
| Unknown | AAR2 PROTEIN FAMILY |
AT1G78290![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3074
| Unknown | SERINE/THREONINE PROTEIN KINASE PUTATIVE |
AT2G01770![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3960
| Unknown | VIT1 (VACUOLAR IRON TRANSPORTER 1) IRON ION TRANSMEMBRANE TRANSPORTER |
AT2G03040![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.1485
| Unknown | TRANSMEMBRANE PROTEIN-RELATED |
AT2G03410![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.3184
| Unknown | MO25 FAMILY PROTEIN |
AT2G16740![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1909
| Unknown | UBC29 (UBIQUITIN-CONJUGATING ENZYME 29) UBIQUITIN-PROTEIN LIGASE |
AT2G19910![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4253
| Unknown | RNA-DEPENDENT RNA POLYMERASE FAMILY PROTEIN |
AT2G29390![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0386
| Unknown | SMO2-2 (STEROL 4-ALPHA-METHYL-OXIDASE 2-2) 4-ALPHA-METHYL-DELTA7-STEROL-4ALPHA-METHYL OXIDASE/ C-4 METHYLSTEROL OXIDASE |
AT2G34250![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.2080
| Unknown | PROTEIN TRANSPORT PROTEIN SEC61 PUTATIVE |
AT2G37760![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2613
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
AT2G39840![]() ![]() ![]() ![]() | PredictedSynthetic Rescue | FSW = 0.0131
| Unknown | TOPP4 PROTEIN SERINE/THREONINE PHOSPHATASE |
AT2G41530![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4078
| Unknown | SFGH (S-FORMYLGLUTATHIONE HYDROLASE) S-FORMYLGLUTATHIONE HYDROLASE/ HYDROLASE ACTING ON ESTER BONDS |
AT2G42160![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.1038
| Unknown | ZINC FINGER (UBIQUITIN-HYDROLASE) DOMAIN-CONTAINING PROTEIN |
AT2G43360![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.5756
| Unknown | BIO2 (BIOTIN AUXOTROPH 2) BIOTIN SYNTHASE |
AT2G45080![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.2243
| Unknown | CYCP31 (CYCLIN P31) CYCLIN-DEPENDENT PROTEIN KINASE |
AT2G45730![]() ![]() ![]() ![]() | PredictedPhenotypic Suppression | FSW = 0.0300
| Unknown | EUKARYOTIC INITIATION FACTOR 3 GAMMA SUBUNIT FAMILY PROTEIN |
AT2G46070![]() ![]() ![]() ![]() | PredictedAffinity Capture-Westernco-fractionationCo-fractionation | FSW = 0.0056
| Unknown | MPK12 (MITOGEN-ACTIVATED PROTEIN KINASE 12) MAP KINASE/ KINASE |
AT2G46860![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3553
| Unknown | ATPPA3 (ARABIDOPSIS THALIANA PYROPHOSPHORYLASE 3) INORGANIC DIPHOSPHATASE/ PYROPHOSPHATASE |
AT2G47570![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3183
| Unknown | 60S RIBOSOMAL PROTEIN L18 (RPL18A) |
AT3G07300![]() ![]() ![]() ![]() | PredictedSynthetic RescuePhenotypic Suppressioninterologs mapping | FSW = 0.0351
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 2B FAMILY PROTEIN / EIF-2B FAMILY PROTEIN |
AT3G11900![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4213
| Unknown | ANT1 (AROMATIC AND NEUTRAL TRANSPORTER 1) AMINO ACID TRANSMEMBRANE TRANSPORTER/ AROMATIC AMINO ACID TRANSMEMBRANE TRANSPORTER/ NEUTRAL AMINO ACID TRANSMEMBRANE TRANSPORTER |
AT3G18850![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2579
| Unknown | LPAT5 ACYLTRANSFERASE |
AT3G20650![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.1975
| Unknown | MRNA CAPPING ENZYME FAMILY PROTEIN |
AT3G30842![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.2893
| Unknown | PDR10 (PLEIOTROPIC DRUG RESISTANCE 10) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT3G49880![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3668
| Unknown | GLYCOSYL HYDROLASE FAMILY PROTEIN 43 |
AT3G51880![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3664
| Unknown | HMGB1 (HIGH MOBILITY GROUP B 1) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR |
AT3G52560![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1279
| Unknown | UEV1D-4 (UBIQUITIN E2 VARIANT 1D-4) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT3G53730![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4199
| Unknown | HISTONE H4 |
AT3G54150![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.1750
| Unknown | EMBRYO-ABUNDANT PROTEIN-RELATED |
AT3G56150![]() ![]() ![]() ![]() | PredictedSynthetic Lethality | FSW = 0.0192
| Unknown | EIF3C (EUKARYOTIC TRANSLATION INITIATION FACTOR 3C) TRANSLATION INITIATION FACTOR |
AT1G01930![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0338
| Unknown | ZINC FINGER PROTEIN-RELATED |
AT1G34580![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.1118
| Unknown | MONOSACCHARIDE TRANSPORTER PUTATIVE |
AT2G27340![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0436
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN CONTAINS INTERPRO DOMAIN/S N-ACETYLGLUCOSAMINYL PHOSPHATIDYLINOSITOL DEACETYLASE (INTERPROIPR003737) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS N-ACETYLGLUCOSAMINYL-PHOSPHATIDYLINOSITOL DE-N-ACETYLASE-RELATED (TAIRAT3G581302) HAS 325 BLAST HITS TO 323 PROTEINS IN 156 SPECIES ARCHAE - 0 BACTERIA - 42 METAZOA - 92 FUNGI - 108 PLANTS - 28 VIRUSES - 0 OTHER EUKARYOTES - 55 (SOURCE NCBI BLINK) |
AT2G27920![]() ![]() ![]() ![]() | Predictedinterologs mapping | FSW = 0.0219
| Unknown | SCPL51 (SERINE CARBOXYPEPTIDASE-LIKE 51) SERINE-TYPE CARBOXYPEPTIDASE |
AT4G19645![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2947
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN INTEGRAL TO MEMBRANE CONTAINS INTERPRO DOMAIN/S TRAM LAG1 AND CLN8 HOMOLOGY (INTERPROIPR006634) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G313002) HAS 401 BLAST HITS TO 401 PROTEINS IN 98 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 186 FUNGI - 102 PLANTS - 84 VIRUSES - 0 OTHER EUKARYOTES - 29 (SOURCE NCBI BLINK) |
AT4G20280![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0358
| Unknown | TAF11 (TBP-ASSOCIATED FACTOR 11) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ TRANSCRIPTION INITIATION FACTOR |
AT4G35620![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinterologs mapping | FSW = 0.3904
| Unknown | CYCB22 (CYCLIN B22) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT5G19150![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4429
| Unknown | CARBOHYDRATE KINASE FAMILY |
AT5G27640![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3960
| Unknown | TIF3B1 (TRANSLATION INITIATION FACTOR 3B1) NUCLEIC ACID BINDING / TRANSLATION INITIATION FACTOR |
AT5G57890![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2979
| Unknown | ANTHRANILATE SYNTHASE BETA SUBUNIT PUTATIVE |
AT4G03430![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0441
| Unknown | EMB2770 (EMBRYO DEFECTIVE 2770) RNA SPLICING FACTOR TRANSESTERIFICATION MECHANISM |
AT4G04940![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0031
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT4G17380![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.2114
| Unknown | MSH4 (MUTS HOMOLOG 4) ATP BINDING / DAMAGED DNA BINDING / MISMATCHED DNA BINDING |
AT4G25860![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.2273
| Unknown | ORP4A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 4A) OXYSTEROL BINDING |
AT4G26810![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2553
| Unknown | SWIB COMPLEX BAF60B DOMAIN-CONTAINING PROTEIN |
AT5G06420![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.1121
| Unknown | ZINC FINGER (CCCH-TYPE/C3HC4-TYPE RING FINGER) FAMILY PROTEIN |
AT5G09390![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0646
| Unknown | CD2-BINDING PROTEIN-RELATED |
AT5G14600![]() ![]() ![]() ![]() | PredictedSynthetic Rescue | FSW = 0.0523
| Unknown | TRNA (ADENINE-N1-)-METHYLTRANSFERASE |
AT5G17000![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2685
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
AT5G19820![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3539
| Unknown | EMB2734 (EMBRYO DEFECTIVE 2734) BINDING / LYASE |
AT5G20060![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3332
| Unknown | PHOSPHOLIPASE/CARBOXYLESTERASE FAMILY PROTEIN |
AT5G54200![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.1464
| Unknown | WD-40 REPEAT FAMILY PROTEIN |
AT5G57330![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0538
| Unknown | ALDOSE 1-EPIMERASE FAMILY PROTEIN |
AT5G02530![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0146
| Unknown | RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE |
AT3G22860![]() ![]() ![]() ![]() | PredictedSynthetic Lethality | FSW = 0.0094
| Unknown | TIF3C2 TRANSLATION INITIATION FACTOR |
AT2G29400![]() ![]() ![]() ![]() | PredictedSynthetic Rescue | FSW = 0.0133
| Unknown | TOPP1 (TYPE ONE PROTEIN PHOSPHATASE 1) PROTEIN SERINE/THREONINE PHOSPHATASE |
AT5G09290![]() ![]() ![]() ![]() | PredictedSynthetic Rescue | FSW = 0.0102
| Unknown | 3(2)5-BISPHOSPHATE NUCLEOTIDASE PUTATIVE / INOSITOL POLYPHOSPHATE 1-PHOSPHATASE PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454