Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G39290 - ( PGP1 (PHOSPHATIDYLGLYCEROLPHOSPHATE SYNTHASE 1) CDP-alcohol phosphatidyltransferase/ CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase )
86 Proteins interacs with AT2G39290| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT1G23310
   | PredictedAffinity Capture-MS | FSW = 0.0129
| Class C:plastid | GGT1 (GLUTAMATEGLYOXYLATE AMINOTRANSFERASE) L-ALANINE2-OXOGLUTARATE AMINOTRANSFERASE/ GLYCINE2-OXOGLUTARATE AMINOTRANSFERASE |
| AT3G16950
| PredictedAffinity Capture-MS | FSW = 0.0486
| Class C:plastid | LPD1 (LIPOAMIDE DEHYDROGENASE 1) DIHYDROLIPOYL DEHYDROGENASE |
| AT5G65430
| PredictedAffinity Capture-MS | FSW = 0.0248
| Class C:plastid | GRF8 (GENERAL REGULATORY FACTOR 8) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
| AT3G11630
| PredictedAffinity Capture-MS | FSW = 0.0354
| Class C:plastid | 2-CYS PEROXIREDOXIN CHLOROPLAST (BAS1) |
| AT2G29690
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.1385
| Class C:plastid | ASA2 (ANTHRANILATE SYNTHASE 2) ANTHRANILATE SYNTHASE |
| AT5G13050
| PredictedAffinity Capture-MS | FSW = 0.0520
| Class C:plastid | 5-FCL (5-FORMYLTETRAHYDROFOLATE CYCLOLIGASE) 5-FORMYLTETRAHYDROFOLATE CYCLO-LIGASE |
| AT5G14320
| PredictedAffinity Capture-MS | FSW = 0.0221
| Class C:plastid | 30S RIBOSOMAL PROTEIN S13 CHLOROPLAST (CS13) |
| AT2G25140
| PredictedAffinity Capture-MS | FSW = 0.0041
| Class C:plastid | CLPB4 (CASEIN LYTIC PROTEINASE B4) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
| AT1G15170
| PredictedAffinity Capture-MS | FSW = 0.0414
| Class C:plastid | MATE EFFLUX FAMILY PROTEIN |
| AT2G19860
| PredictedAffinity Capture-MS | FSW = 0.0786
| Class C:mitochondrion | HXK2 (HEXOKINASE 2) ATP BINDING / FRUCTOKINASE/ GLUCOKINASE/ HEXOKINASE |
| AT3G59280
| PredictedSynthetic Rescue | FSW = 0.0180
| Class C:mitochondrion | TXR1 (THAXTOMIN A RESISTANT 1) |
| AT2G14120
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0520
| Class C:mitochondrion | DYNAMIN-LIKE PROTEIN 2B (ADL2B) |
| AT1G07180
| PredictedAffinity Capture-MS | FSW = 0.0107
| Class C:mitochondrion | NDA1 (ALTERNATIVE NAD(P)H DEHYDROGENASE 1) NADH DEHYDROGENASE |
| AT5G47630
| PredictedAffinity Capture-MS | FSW = 0.0675
| Class C:mitochondrion | MTACP3 (MITOCHONDRIAL ACYL CARRIER PROTEIN 3) ACYL CARRIER/ COFACTOR BINDING |
| AT4G10040
| PredictedAffinity Capture-MS | FSW = 0.0098
| Class C:mitochondrion | CYTC-2 (CYTOCHROME C-2) ELECTRON CARRIER/ HEME BINDING / IRON ION BINDING |
| AT2G43160
| PredictedAffinity Capture-MS | FSW = 0.0596
| Unknown | EPSIN N-TERMINAL HOMOLOGY (ENTH) DOMAIN-CONTAINING PROTEIN |
| AT3G47370
| PredictedAffinity Capture-MS | FSW = 0.0543
| Unknown | 40S RIBOSOMAL PROTEIN S20 (RPS20B) |
| AT1G02780
| Predictedco-fractionationCo-fractionation | FSW = 0.0175
| Unknown | EMB2386 (EMBRYO DEFECTIVE 2386) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT1G27970
| PredictedAffinity Capture-MS | FSW = 0.0554
| Unknown | NTF2B (NUCLEAR TRANSPORT FACTOR 2B) RAN GTPASE BINDING / PROTEIN TRANSPORTER |
| AT5G23900
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0872
| Unknown | 60S RIBOSOMAL PROTEIN L13 (RPL13D) |
| AT5G45970
| PredictedAffinity Capture-MS | FSW = 0.0100
| Unknown | ARAC2 (ARABIDOPSIS RAC-LIKE 2) GTP BINDING |
| AT3G53870
| PredictedSynthetic Rescueinterologs mappingSynthetic Rescue | FSW = 0.0401
| Unknown | 40S RIBOSOMAL PROTEIN S3 (RPS3B) |
| AT4G19690
| Predictedtwo hybrid | FSW = 0.0298
| Unknown | IRT1 (IRON-REGULATED TRANSPORTER 1) CADMIUM ION TRANSMEMBRANE TRANSPORTER/ COPPER UPTAKE TRANSMEMBRANE TRANSPORTER/ IRON ION TRANSMEMBRANE TRANSPORTER/ MANGANESE ION TRANSMEMBRANE TRANSPORTER/ ZINC ION TRANSMEMBRANE TRANSPORTER |
| AT3G11730
| PredictedAffinity Capture-MS | FSW = 0.0049
| Unknown | ATFP8 GTP BINDING / GTP-DEPENDENT PROTEIN BINDING / MYOSIN XI TAIL BINDING |
| AT4G29510
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0387
| Unknown | PRMT11 (ARGININE METHYLTRANSFERASE 11) PROTEIN-ARGININE N-METHYLTRANSFERASE |
| AT1G75560
| PredictedAffinity Capture-MS | FSW = 0.0243
| Unknown | ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN |
| AT3G50670
| PredictedAffinity Capture-MS | FSW = 0.0081
| Unknown | U1-70K (U1 SMALL NUCLEAR RIBONUCLEOPROTEIN-70K) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
| AT5G59870
| PredictedAffinity Capture-MS | FSW = 0.0693
| Unknown | HTA6 DNA BINDING |
| AT5G60440
| PredictedSynthetic RescueAffinity Capture-MSAffinity Capture-MStwo hybridtwo hybridAffinity Capture-MStwo hybridSynthetic LethalitySynthetic Rescue | FSW = 0.0143
| Unknown | AGL62 (AGAMOUS-LIKE 62) DNA BINDING / TRANSCRIPTION FACTOR |
| AT1G09060
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1593
| Unknown | TRANSCRIPTION FACTOR JUMONJI (JMJC) DOMAIN-CONTAINING PROTEIN |
| AT3G45980
| PredictedAffinity Capture-MS | FSW = 0.0117
| Unknown | HTB9 DNA BINDING |
| AT2G14610
| Predictedtwo hybrid | FSW = 0.0176
| Unknown | PR1 (PATHOGENESIS-RELATED GENE 1) |
| AT3G45280
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Westernbiochemical | FSW = 0.1250
| Unknown | SYP72 (SYNTAXIN OF PLANTS 72) PROTEIN TRANSPORTER |
| AT3G54820
| PredictedAffinity Capture-MS | FSW = 0.0150
| Unknown | PIP25 (PLASMA MEMBRANE INTRINSIC PROTEIN 25) WATER CHANNEL |
| AT5G63960
| Predictedtwo hybrid | FSW = 0.0087
| Unknown | EMB2780 (EMBRYO DEFECTIVE 2780) DNA BINDING / DNA-DIRECTED DNA POLYMERASE/ NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
| AT4G39910
| PredictedAffinity Capture-MS | FSW = 0.0211
| Unknown | ATUBP3 (ARABIDOPSIS THALIANA UBIQUITIN-SPECIFIC PROTEASE 3) UBIQUITIN-SPECIFIC PROTEASE |
| AT1G01140
| PredictedAffinity Capture-MS | FSW = 0.0211
| Unknown | CIPK9 (CBL-INTERACTING PROTEIN KINASE 9) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
| AT1G06090
| Predictedinterologs mapping | FSW = 0.0143
| Unknown | FATTY ACID DESATURASE FAMILY PROTEIN |
| AT1G08120
| Predictedtwo hybridtwo hybrid | FSW = 0.0444
| Unknown | LOCATED IN CELLULAR_COMPONENT UNKNOWN BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS ATP BINDING / CATALYTIC/ PROTEIN KINASE (TAIRAT5G261101) HAS 380 BLAST HITS TO 380 PROTEINS IN 166 SPECIES ARCHAE - 115 BACTERIA - 0 METAZOA - 110 FUNGI - 39 PLANTS - 20 VIRUSES - 0 OTHER EUKARYOTES - 96 (SOURCE NCBI BLINK) |
| AT1G10280
| PredictedAffinity Capture-MSAffinity Capture-Western | FSW = 0.0749
| Unknown | UNKNOWN PROTEIN |
| AT1G22290
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0167
| Unknown | 14-3-3 PROTEIN GF14 PUTATIVE (GRF10) |
| AT1G29150
| PredictedAffinity Capture-MS | FSW = 0.0109
| Unknown | ATS9 (ARABIDOPSIS NON-ATPASE SUBUNIT 9) |
| AT1G34580
| PredictedAffinity Capture-MS | FSW = 0.0723
| Unknown | MONOSACCHARIDE TRANSPORTER PUTATIVE |
| AT1G50090
| PredictedAffinity Capture-Westerntwo hybridAffinity Capture-MSAffinity Capture-MSAffinity Capture-MStwo hybridReconstituted Complex | FSW = 0.0639
| Unknown | AMINOTRANSFERASE CLASS IV FAMILY PROTEIN |
| AT1G59730
| PredictedAffinity Capture-MS | FSW = 0.0294
| Unknown | ATH7 (THIOREDOXIN H-TYPE 7) |
| AT1G69880
| PredictedAffinity Capture-MStwo hybrid | FSW = 0.0444
| Unknown | ATH8 (THIOREDOXIN H-TYPE 8) |
| AT1G80460
| PredictedAffinity Capture-MS | FSW = 0.0172
| Unknown | NHO1 (NONHOST RESISTANCE TO P S PHASEOLICOLA 1) CARBOHYDRATE KINASE/ GLYCEROL KINASE |
| AT1G80710
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0570
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
| AT2G04660
| PredictedAffinity Capture-Westerntwo hybridAffinity Capture-MSinterologs mappinginterologs mappingAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MStwo hybridAffinity Capture-MSAffinity Capture-MSinterologs mappingAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MStwo hybrid | FSW = 0.0778
| Unknown | APC2 UBIQUITIN PROTEIN LIGASE BINDING / UBIQUITIN-PROTEIN LIGASE |
| AT2G19750 | PredictedAffinity Capture-MS | FSW = 0.0306
| Unknown | 40S RIBOSOMAL PROTEIN S30 (RPS30A) |
| AT2G20280
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1492
| Unknown | ZINC FINGER (CCCH-TYPE) FAMILY PROTEIN |
| AT2G38600
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1584
| Unknown | ACID PHOSPHATASE CLASS B FAMILY PROTEIN |
| AT1G13950
| PredictedSynthetic Rescue | FSW = 0.0119
| Unknown | ELF5A-1 (EUKARYOTIC ELONGATION FACTOR 5A-1) TRANSLATION INITIATION FACTOR |
| AT2G32050
| PredictedSynthetic Lethality | FSW = 0.0148
| Unknown | CELL CYCLE CONTROL PROTEIN-RELATED |
| AT2G47090
| PredictedPhenotypic EnhancementSynthetic Lethalityinterologs mapping | FSW = 0.0217
| Unknown | NUCLEIC ACID BINDING / PROTEIN BINDING / ZINC ION BINDING |
| AT3G59790
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0772
| Unknown | ATMPK10 MAP KINASE/ KINASE |
| AT3G62770
| Predictedinterologs mappingAffinity Capture-MS | FSW = 0.0946
| Unknown | ATATG18A |
| AT4G12790
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0573
| Unknown | ATP-BINDING FAMILY PROTEIN |
| AT5G38030
| PredictedSynthetic Lethality | FSW = 0.0553
| Unknown | MATE EFFLUX FAMILY PROTEIN |
| AT5G66360
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Westernbiochemical | FSW = 0.1492
| Unknown | RIBOSOMAL RNA ADENINE DIMETHYLASE FAMILY PROTEIN |
| AT5G66610
| PredictedAffinity Capture-MS | FSW = 0.0369
| Unknown | DAR7 (DA1-RELATED PROTEIN 7) ZINC ION BINDING |
| AT2G39590
| PredictedAffinity Capture-MS | FSW = 0.0098
| Unknown | 40S RIBOSOMAL PROTEIN S15A (RPS15AC) |
| AT2G42160
| PredictedAffinity Capture-MS | FSW = 0.0362
| Unknown | ZINC FINGER (UBIQUITIN-HYDROLASE) DOMAIN-CONTAINING PROTEIN |
| AT2G43190
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0606
| Unknown | RIBONUCLEASE P FAMILY PROTEIN |
| AT2G45080
| PredictedAffinity Capture-MS | FSW = 0.0403
| Unknown | CYCP31 (CYCLIN P31) CYCLIN-DEPENDENT PROTEIN KINASE |
| AT3G06470
| PredictedAffinity Capture-MS | FSW = 0.0529
| Unknown | GNS1/SUR4 MEMBRANE FAMILY PROTEIN |
| AT3G18850
| PredictedAffinity Capture-MS | FSW = 0.0973
| Unknown | LPAT5 ACYLTRANSFERASE |
| AT3G24010
| PredictedAffinity Capture-MS | FSW = 0.0118
| Unknown | ING1 (INHIBITOR OF GROWTH 1) DNA BINDING / METHYLATED HISTONE RESIDUE BINDING |
| AT3G27110
| PredictedAffinity Capture-MS | FSW = 0.0387
| Unknown | PEPTIDASE M48 FAMILY PROTEIN |
| AT3G27440
| PredictedSynthetic Rescue | FSW = 0.0059
| Unknown | URACIL PHOSPHORIBOSYLTRANSFERASE PUTATIVE / UMP PYROPHOSPHORYLASE PUTATIVE / UPRTASE PUTATIVE |
| AT3G49880
| PredictedAffinity Capture-MS | FSW = 0.0693
| Unknown | GLYCOSYL HYDROLASE FAMILY PROTEIN 43 |
| AT3G57140
| PredictedPhenotypic SuppressionSynthetic Rescue | FSW = 0.0231
| Unknown | PATATIN-RELATED |
| AT3G59410
| PredictedAffinity Capture-MS | FSW = 0.0717
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
| AT4G17380
| PredictedAffinity Capture-MS | FSW = 0.0353
| Unknown | MSH4 (MUTS HOMOLOG 4) ATP BINDING / DAMAGED DNA BINDING / MISMATCHED DNA BINDING |
| AT4G22753
| PredictedAffinity Capture-MS | FSW = 0.0391
| Unknown | SMO1-3 (STEROL 4-ALPHA METHYL OXIDASE 1-3) 44-DIMETHYL-9BETA19-CYCLOPROPYLSTEROL-4ALPHA-METHYL OXIDASE/ CATALYTIC |
| AT4G26230
| PredictedAffinity Capture-MS | FSW = 0.0362
| Unknown | 60S RIBOSOMAL PROTEIN L31 (RPL31B) |
| AT4G29140
| PredictedAffinity Capture-MS | FSW = 0.0213
| Unknown | MATE EFFLUX PROTEIN-RELATED |
| AT5G06600
| PredictedAffinity Capture-MS | FSW = 0.0355
| Unknown | UBP12 (UBIQUITIN-SPECIFIC PROTEASE 12) UBIQUITIN THIOLESTERASE/ UBIQUITIN-SPECIFIC PROTEASE |
| AT5G08600
| PredictedAffinity Capture-MS | FSW = 0.0406
| Unknown | U3 RIBONUCLEOPROTEIN (UTP) FAMILY PROTEIN |
| AT5G09630
| PredictedAffinity Capture-MS | FSW = 0.0910
| Unknown | PROTEIN BINDING / ZINC ION BINDING |
| AT5G19150
| PredictedAffinity Capture-MS | FSW = 0.0880
| Unknown | CARBOHYDRATE KINASE FAMILY |
| AT5G19820
| PredictedAffinity Capture-MS | FSW = 0.0603
| Unknown | EMB2734 (EMBRYO DEFECTIVE 2734) BINDING / LYASE |
| AT5G27640
| PredictedAffinity Capture-MS | FSW = 0.0415
| Unknown | TIF3B1 (TRANSLATION INITIATION FACTOR 3B1) NUCLEIC ACID BINDING / TRANSLATION INITIATION FACTOR |
| AT5G57480
| Predictedtwo hybridbiochemical | FSW = 0.0200
| Unknown | AAA-TYPE ATPASE FAMILY PROTEIN |
| AT5G57890
| PredictedAffinity Capture-MS | FSW = 0.0462
| Unknown | ANTHRANILATE SYNTHASE BETA SUBUNIT PUTATIVE |
| AT5G59490
| PredictedAffinity Capture-MS | FSW = 0.0430
| Unknown | HALOACID DEHALOGENASE-LIKE HYDROLASE FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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