Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G27440 - ( uracil phosphoribosyltransferase putative / UMP pyrophosphorylase putative / UPRTase putative )
64 Proteins interacs with AT3G27440Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G62870 | PredictedSynthetic Lethality | FSW = 0.0292
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT5G26030 | PredictedAffinity Capture-MS | FSW = 0.0147
| Unknown | FC1 (FERROCHELATASE 1) FERROCHELATASE |
AT3G44310 | PredictedPhenotypic Enhancement | FSW = 0.0422
| Unknown | NIT1 INDOLE-3-ACETONITRILE NITRILASE/ INDOLE-3-ACETONITRILE NITRILE HYDRATASE/ NITRILASE |
AT3G48170 | PredictedPhenotypic Suppression | FSW = 0.0901
| Unknown | ALDH10A9 3-CHLOROALLYL ALDEHYDE DEHYDROGENASE/ OXIDOREDUCTASE |
AT5G19830 | PredictedAffinity Capture-MS | FSW = 0.0461
| Unknown | AMINOACYL-TRNA HYDROLASE |
AT5G65430 | PredictedPhenotypic Enhancement | FSW = 0.0792
| Unknown | GRF8 (GENERAL REGULATORY FACTOR 8) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT2G39290 | PredictedSynthetic Rescue | FSW = 0.0059
| Unknown | PGP1 (PHOSPHATIDYLGLYCEROLPHOSPHATE SYNTHASE 1) CDP-ALCOHOL PHOSPHATIDYLTRANSFERASE/ CDP-DIACYLGLYCEROL-GLYCEROL-3-PHOSPHATE 3-PHOSPHATIDYLTRANSFERASE |
AT5G51820 | PredictedPhenotypic Enhancement | FSW = 0.1238
| Unknown | PGM (PHOSPHOGLUCOMUTASE) PHOSPHOGLUCOMUTASE |
AT1G12900 | PredictedPhenotypic Enhancement | FSW = 0.0298
| Unknown | GAPA-2 (GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT 2) NAD OR NADH BINDING / BINDING / CATALYTIC/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE (PHOSPHORYLATING)/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE |
AT2G42590 | PredictedAffinity Capture-MS | FSW = 0.0509
| Unknown | GRF9 (GENERAL REGULATORY FACTOR 9) CALCIUM ION BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT5G60540 | PredictedPhenotypic Enhancement | FSW = 0.2038
| Unknown | PDX2 (PYRIDOXINE BIOSYNTHESIS 2) GLUTAMINASE/ GLUTAMINYL-TRNA SYNTHASE (GLUTAMINE-HYDROLYZING)/ PROTEIN HETERODIMERIZATION |
AT5G58640 | PredictedPhenotypic Enhancement | FSW = 0.0486
| Unknown | SELENOPROTEIN-RELATED |
AT3G02740 | PredictedAffinity Capture-MSCo-purificationAffinity Capture-Western | FSW = 0.1327
| Unknown | ASPARTYL PROTEASE FAMILY PROTEIN |
AT2G32670 | PredictedPhenotypic Suppression | FSW = 0.1468
| Unknown | ATVAMP725 |
AT1G75230 | Predictedpull down | FSW = 0.0065
| Unknown | HHH-GPD BASE EXCISION DNA REPAIR FAMILY PROTEIN |
AT5G54840 | Predictedinteraction prediction | FSW = 0.0128
| Unknown | SGP1 GTP BINDING |
AT4G25340 | PredictedPhenotypic Suppression | FSW = 0.1193
| Unknown | IMMUNOPHILIN-RELATED / FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED |
AT2G30160 | PredictedPhenotypic Enhancement | FSW = 0.1699
| Unknown | MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN |
AT1G30000 | PredictedReconstituted ComplexAffinity Capture-Western | FSW = 0.1014
| Unknown | GLYCOSIDE HYDROLASE FAMILY 47 PROTEIN |
AT3G18480 | PredictedPhenotypic Suppression | FSW = 0.0627
| Unknown | ATCASP (ARABIDOPSIS THALIANA CCAAT-DISPLACEMENT PROTEIN ALTERNATIVELY SPLICED PRODUCT) |
AT4G33710 | PredictedPhenotypic Enhancement | FSW = 0.0456
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT3G54840 | PredictedAffinity Capture-MSPhenotypic SuppressionCo-purificationAffinity Capture-Western | FSW = 0.2111
| Unknown | ARA6 GTP BINDING / GTPASE |
AT4G39200 | PredictedPhenotypic Enhancement | FSW = 0.2019
| Unknown | 40S RIBOSOMAL PROTEIN S25 (RPS25E) |
AT4G26840 | Predictedinteraction prediction | FSW = 0.0021
| Unknown | SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1) PROTEIN BINDING / PROTEIN TAG |
AT4G17190 | PredictedAffinity Capture-MS | FSW = 0.0918
| Unknown | FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) DIMETHYLALLYLTRANSTRANSFERASE/ GERANYLTRANSTRANSFERASE |
AT4G26860 | Predictedpull down | FSW = 0.0152
| Unknown | PYRIDOXAL PHOSPHATE BINDING |
AT1G15440 | PredictedAffinity Capture-MS | FSW = 0.0334
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT3G16840 | PredictedReconstituted ComplexAffinity Capture-MSAffinity Capture-Westerntwo hybridAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSAffinity Capture-Westerntwo hybrid | FSW = 0.0402
| Unknown | ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING |
AT1G21370 | PredictedPhenotypic Suppression | FSW = 0.1743
| Unknown | UNKNOWN PROTEIN |
AT1G25155 | PredictedPhenotypic Suppression | FSW = 0.1624
| Unknown | ANTHRANILATE SYNTHASE BETA SUBUNIT PUTATIVE |
AT1G27040 | PredictedPhenotypic Suppression | FSW = 0.1101
| Unknown | NITRATE TRANSPORTER PUTATIVE |
AT1G52500 | PredictedPhenotypic Enhancement | FSW = 0.1092
| Unknown | ATMMH-1 (ARABIDOPSIS THALIANA MUTM HOMOLOG-1) DNA N-GLYCOSYLASE |
AT1G55300 | PredictedPhenotypic Enhancement | FSW = 0.1426
| Unknown | TAF7 (TBP-ASSOCIATED FACTOR 7) GENERAL RNA POLYMERASE II TRANSCRIPTION FACTOR |
AT1G66590 | Predictedsynthetic growth defect | FSW = 0.1210
| Unknown | COX19 FAMILY PROTEIN |
AT1G68530 | PredictedPhenotypic Enhancement | FSW = 0.1042
| Unknown | KCS6 (3-KETOACYL-COA SYNTHASE 6) CATALYTIC/ TRANSFERASE TRANSFERRING ACYL GROUPS OTHER THAN AMINO-ACYL GROUPS |
AT2G01600 | PredictedPhenotypic Enhancement | FSW = 0.1226
| Unknown | EPSIN N-TERMINAL HOMOLOGY (ENTH) DOMAIN-CONTAINING PROTEIN |
AT2G47760 | PredictedPhenotypic Enhancement | FSW = 0.0584
| Unknown | ALG3 ALPHA-13-MANNOSYLTRANSFERASE/ CATALYTIC |
AT3G02000 | PredictedPhenotypic Enhancement | FSW = 0.1592
| Unknown | ROXY1 DISULFIDE OXIDOREDUCTASE |
AT3G11240 | PredictedPhenotypic Enhancement | FSW = 0.0833
| Unknown | ATE2 (ARGININE-TRNA PROTEIN TRANSFERASE 2) ARGINYLTRANSFERASE |
AT3G22290 | PredictedSynthetic Lethality | FSW = 0.1326
| Unknown | UNKNOWN PROTEIN |
AT3G25900 | PredictedPhenotypic Enhancement | FSW = 0.1141
| Unknown | HMT-1 HOMOCYSTEINE S-METHYLTRANSFERASE |
AT3G45240 | Predictedsynthetic growth defect | FSW = 0.0880
| Unknown | GRIK1 (GEMINIVIRUS REP INTERACTING KINASE 1) KINASE |
AT3G59540 | PredictedPhenotypic Enhancement | FSW = 0.1357
| Unknown | 60S RIBOSOMAL PROTEIN L38 (RPL38B) |
AT4G04695 | PredictedPhenotypic Enhancement | FSW = 0.1053
| Unknown | CPK31 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT4G15410 | PredictedAffinity Capture-MS | FSW = 0.0515
| Unknown | PUX5 (ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN PHOSPHATASE 2A 55 KDA REGULATORY SUBUNIT B PRIME GAMMA) PROTEIN BINDING |
AT4G21490 | PredictedPhenotypic Suppression | FSW = 0.0936
| Unknown | NDB3 NADH DEHYDROGENASE |
AT4G23895 | PredictedPhenotypic Enhancement | FSW = 0.0736
| Unknown | PLECKSTRIN HOMOLOGY (PH) DOMAIN-CONTAINING PROTEIN-RELATED |
AT5G01430 | PredictedPhenotypic Enhancement | FSW = 0.2031
| Unknown | GOT1-LIKE FAMILY PROTEIN |
AT5G05070 | PredictedPhenotypic Enhancement | FSW = 0.0548
| Unknown | ZINC ION BINDING |
AT5G13010 | PredictedPhenotypic Enhancement | FSW = 0.0081
| Unknown | EMB3011 (EMBRYO DEFECTIVE 3011) ATP BINDING / RNA HELICASE/ HELICASE/ NUCLEIC ACID BINDING |
AT5G13700 | PredictedPhenotypic Enhancement | FSW = 0.0221
| Unknown | ATPAO1 (ARABIDOPSIS THALIANA POLYAMINE OXIDASE 1) FAD BINDING / POLYAMINE OXIDASE |
AT5G16980 | PredictedPhenotypic Enhancement | FSW = 0.1482
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
AT5G24840 | PredictedPhenotypic Enhancement | FSW = 0.1068
| Unknown | TRNA (GUANINE-N7-)-METHYLTRANSFERASE |
AT5G38890 | PredictedPhenotypic Enhancement | FSW = 0.0237
| Unknown | EXORIBONUCLEASE-RELATED |
AT5G42600 | PredictedAffinity Capture-MS | FSW = 0.0331
| Unknown | MRN1 (MARNERAL SYNTHASE) CATALYTIC/ MARNERAL SYNTHASE |
AT5G45620 | PredictedSynthetic Lethality | FSW = 0.1475
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN9) |
AT5G49970 | PredictedPhenotypic Enhancement | FSW = 0.1578
| Unknown | ATPPOX (A THALIANA PYRIDOXIN (PYRODOXAMINE) 5-PHOSPHATE OXIDASE) PYRIDOXAMINE-PHOSPHATE OXIDASE |
AT5G53300 | PredictedPhenotypic Enhancement | FSW = 0.0317
| Unknown | UBC10 (UBIQUITIN-CONJUGATING ENZYME 10) UBIQUITIN-PROTEIN LIGASE |
AT5G58380 | PredictedPhenotypic Enhancement | FSW = 0.0386
| Unknown | SIP1 (SOS3-INTERACTING PROTEIN 1) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT4G00800 | PredictedPhenotypic Enhancement | FSW = 0.1542
| Unknown | BINDING / PROTEIN BINDING / ZINC ION BINDING |
AT1G55810 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0363
| Unknown | URACIL PHOSPHORIBOSYLTRANSFERASE PUTATIVE / UMP PYROPHOSPHORYLASE PUTATIVE / UPRTASE PUTATIVE |
AT4G26510 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1032
| Unknown | ATP BINDING / KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR / URACIL PHOSPHORIBOSYLTRANSFERASE |
AT3G27190 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.0729
| Unknown | URACIL PHOSPHORIBOSYLTRANSFERASE PUTATIVE / UMP PYROPHOSPHORYLASE PUTATIVE / UPRTASE PUTATIVE |
AT5G40870 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0794
| Unknown | ATUK/UPRT1 (URIDINE KINASE/URACIL PHOSPHORIBOSYLTRANSFERASE 1) ATP BINDING / KINASE/ URACIL PHOSPHORIBOSYLTRANSFERASE/ URIDINE KINASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454