Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G05070 - ( zinc ion binding )
30 Proteins interacs with AT5G05070Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G15090 | PredictedSynthetic Lethality | FSW = 0.0241
| Unknown | VDAC3 (VOLTAGE DEPENDENT ANION CHANNEL 3) VOLTAGE-GATED ANION CHANNEL |
AT2G44120 | PredictedPhenotypic Enhancement | FSW = 0.0539
| Unknown | 60S RIBOSOMAL PROTEIN L7 (RPL7C) |
AT5G09590 | PredictedPhenotypic EnhancementSynthetic Lethality | FSW = 0.0812
| Unknown | MTHSC70-2 (MITOCHONDRIAL HSP70 2) ATP BINDING |
AT1G07810 | PredictedPhenotypic Enhancement | FSW = 0.0128
| Unknown | ECA1 (ER-TYPE CA2+-ATPASE 1) CALCIUM-TRANSPORTING ATPASE |
AT5G57870 | PredictedSynthetic Lethality | FSW = 0.1517
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 4F PUTATIVE / EIF-4F PUTATIVE |
AT3G20550 | PredictedPhenotypic Suppression | FSW = 0.0226
| Unknown | DDL (DAWDLE) |
AT1G32470 | PredictedPhenotypic Enhancement | FSW = 0.0677
| Unknown | GLYCINE CLEAVAGE SYSTEM H PROTEIN MITOCHONDRIAL PUTATIVE |
AT5G16150 | PredictedSynthetic Lethality | FSW = 0.0567
| Unknown | PGLCT (PLASTIDIC GLC TRANSLOCATOR) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT3G54670 | PredictedPhenotypic Enhancement | FSW = 0.0619
| Unknown | TTN8 (TITAN8) ATP BINDING / TRANSPORTER |
AT1G04750 | PredictedPhenotypic Enhancement | FSW = 0.0397
| Unknown | VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721) |
AT4G21680 | PredictedPhenotypic Enhancement | FSW = 0.0405
| Unknown | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
AT5G44500 | Predictedtwo hybrid | FSW = 0.0038
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN ASSOCIATED PROTEIN B PUTATIVE / SNRNP-B PUTATIVE / SM PROTEIN B PUTATIVE |
AT4G39160 | PredictedPhenotypic Enhancement | FSW = 0.0241
| Unknown | DNA BINDING / TRANSCRIPTION FACTOR |
AT1G73690 | PredictedAffinity Capture-Western | FSW = 0.0554
| Unknown | CDKD11 (CYCLIN-DEPENDENT KINASE D11) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT1G10060 | Predictedtwo hybrid | FSW = 0.0261
| Unknown | BRANCHED-CHAIN AMINO ACID AMINOTRANSFERASE 1 / BRANCHED-CHAIN AMINO ACID TRANSAMINASE 1 (BCAT1) |
AT3G18480 | PredictedPhenotypic Enhancement | FSW = 0.0480
| Unknown | ATCASP (ARABIDOPSIS THALIANA CCAAT-DISPLACEMENT PROTEIN ALTERNATIVELY SPLICED PRODUCT) |
AT1G52300 | PredictedPhenotypic Enhancement | FSW = 0.0119
| Unknown | 60S RIBOSOMAL PROTEIN L37 (RPL37B) |
AT5G59720 | PredictedSynthetic Lethality | FSW = 0.0481
| Unknown | HSP182 (HEAT SHOCK PROTEIN 182) |
AT1G52500 | PredictedPhenotypic EnhancementPhenotypic Enhancement | FSW = 0.0391
| Unknown | ATMMH-1 (ARABIDOPSIS THALIANA MUTM HOMOLOG-1) DNA N-GLYCOSYLASE |
AT2G15230 | PredictedSynthetic Lethality | FSW = 0.1664
| Unknown | ATLIP1 (ARABIDOPSIS THALIANA LIPASE 1) GALACTOLIPASE/ HYDROLASE/ PHOSPHOLIPASE/ TRIACYLGLYCEROL LIPASE |
AT2G47830 | PredictedSynthetic Lethality | FSW = 0.1497
| Unknown | CATION EFFLUX FAMILY PROTEIN / METAL TOLERANCE PROTEIN PUTATIVE (MTPC1) |
AT3G06460 | PredictedSynthetic Lethality | FSW = 0.0607
| Unknown | GNS1/SUR4 MEMBRANE FAMILY PROTEIN |
AT3G19670 | PredictedPhenotypic Enhancement | FSW = 0.0406
| Unknown | PROTEIN BINDING |
AT3G27440 | PredictedPhenotypic Enhancement | FSW = 0.0548
| Unknown | URACIL PHOSPHORIBOSYLTRANSFERASE PUTATIVE / UMP PYROPHOSPHORYLASE PUTATIVE / UPRTASE PUTATIVE |
AT4G25150 | PredictedPhenotypic Enhancement | FSW = 0.0162
| Unknown | ACID PHOSPHATASE PUTATIVE |
AT1G71530 | PredictedPhenotypic Enhancement | FSW = 0.0556
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT3G25900 | PredictedPhenotypic Enhancement | FSW = 0.0810
| Unknown | HMT-1 HOMOCYSTEINE S-METHYLTRANSFERASE |
AT3G45240 | PredictedPhenotypic Enhancement | FSW = 0.0237
| Unknown | GRIK1 (GEMINIVIRUS REP INTERACTING KINASE 1) KINASE |
AT5G39500 | PredictedPhenotypic Enhancement | FSW = 0.0441
| Unknown | PATTERN FORMATION PROTEIN PUTATIVE |
AT3G56920 | PredictedPhylogenetic profile method | FSW = 0.0262
| Unknown | ZINC FINGER (DHHC TYPE) FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454