Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G73690 - ( CDKD11 (CYCLIN-DEPENDENT KINASE D11) ATP binding / kinase/ protein kinase/ protein serine/threonine kinase )
28 Proteins interacs with AT1G73690Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G48750 | Experimentalprotein complementation assay | FSW = 0.1047
| Class A:nucleusClass B:plasma membranecytosolClass D:cytosol (p = 0.67) | CDC2 (CELL DIVISION CONTROL 2) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING / PROTEIN KINASE |
AT1G47210 | Experimentalprotein complementation assay | FSW = 0.1471
| Class A:nucleusClass B:cytosolClass D:mitochondrion (p = 0.82)cytosol (p = 0.67) | CYCLIN FAMILY PROTEIN |
AT2G32710 | Experimentalprotein complementation assay | FSW = 0.3743
| Class A:nucleusClass D:mitochondrion (p = 0.82) | KRP4 CYCLIN BINDING / CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR |
AT5G27620 | Experimentaltwo hybridprotein complementation assay | FSW = 0.0948
| Unknown | CYCH1 (CYCLIN H1) CYCLIN-DEPENDENT PROTEIN KINASE/ PROTEIN BINDING / PROTEIN KINASE |
AT4G28980 | Experimentalprotein complementation assay | FSW = 0.2772
| Unknown | CYCLIN-DEPENDENT KINASE-ACTIVATING KINASE 1AT / CDK-ACTIVATING KINASE 1AT (CAK1) |
AT2G27970 | Experimentalprotein complementation assay | FSW = 0.1364
| Unknown | CKS2 (CDK-SUBUNIT 2) CYCLIN-DEPENDENT PROTEIN KINASE/ CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT5G11300 | Experimentalprotein complementation assaytwo hybrid | FSW = 0.0256
| Unknown | CYC3B (MITOTIC-LIKE CYCLIN 3B FROM ARABIDOPSIS) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT1G15570 | Experimentalprotein complementation assay | FSW = 0.0750
| Unknown | CYCA23 (CYCLIN A23) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT1G47230 | Experimentalprotein complementation assay | FSW = 0.1396
| Unknown | CYCLIN PUTATIVE |
AT1G20610 | Experimentalprotein complementation assay | FSW = 0.0748
| Unknown | CYCB23 (CYCLIN B23) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT1G70210 | Experimentalprotein complementation assay | FSW = 0.1021
| Unknown | CYCD11 (CYCLIN D11) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT5G65420 | Experimentalprotein complementation assay | FSW = 0.1701
| Unknown | CYCD41 (CYCLIN D41) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT5G10440 | Experimentalprotein complementation assay | FSW = 0.1582
| Unknown | CYCD42 (CYCLIN D42) CYCLIN-DEPENDENT PROTEIN KINASE |
AT4G37630 | Experimentalprotein complementation assay | FSW = 0.1922
| Unknown | CYCD51 (CYCLIN D51) CYCLIN-DEPENDENT PROTEIN KINASE |
AT4G03270 | Experimentalprotein complementation assay | FSW = 0.1714
| Unknown | CYCD61 (CYCLIN D61) CYCLIN-DEPENDENT PROTEIN KINASE |
AT1G16330 | Experimentaltwo hybrid | FSW = 0.0693
| Unknown | CYCB31 (CYCLIN B31) CYCLIN-DEPENDENT PROTEIN KINASE |
AT3G62870 | PredictedSynthetic Lethality | FSW = 0.0073
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT2G20800 | PredictedSynthetic Rescue | FSW = 0.0949
| Unknown | NDB4 (NAD(P)H DEHYDROGENASE B4) NADH DEHYDROGENASE |
AT3G54670 | Predictedtwo hybridtwo hybridAffinity Capture-WesternAffinity Capture-Western | FSW = 0.0519
| Unknown | TTN8 (TITAN8) ATP BINDING / TRANSPORTER |
AT3G19930 | PredictedSynthetic Rescue | FSW = 0.1008
| Unknown | STP4 (SUGAR TRANSPORTER 4) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ MONOSACCHARIDE TRANSMEMBRANE TRANSPORTER/ SUCROSEHYDROGEN SYMPORTER/ SUGARHYDROGEN SYMPORTER |
AT1G79230 | PredictedSynthetic Lethality | FSW = 0.0994
| Unknown | MST1 (MERCAPTOPYRUVATE SULFURTRANSFERASE 1) 3-MERCAPTOPYRUVATE SULFURTRANSFERASE/ SULFURTRANSFERASE/ THIOSULFATE SULFURTRANSFERASE |
AT1G55890 | PredictedGene fusion method | FSW = 0.0345
| Unknown | PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN |
AT1G07880 | Predictedtwo hybridAffinity Capture-Western | FSW = 0.0188
| Unknown | ATMPK13 MAP KINASE/ KINASE |
AT1G10810 | Predictedtwo hybrid | FSW = 0.0450
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
AT1G71530 | PredictedAffinity Capture-Westerntwo hybridAffinity Capture-Western | FSW = 0.1047
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT4G32850 | PredictedAffinity Capture-Western | FSW = 0.0250
| Unknown | NPAP (NUCLEAR POLY(A) POLYMERASE) NUCLEOTIDYLTRANSFERASE/ PROTEIN BINDING |
AT5G05070 | PredictedAffinity Capture-Western | FSW = 0.0554
| Unknown | ZINC ION BINDING |
AT5G52200 | PredictedSynthetic Lethality | FSW = 0.0789
| Unknown | UNKNOWN PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454