Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G16330 - ( CYCB31 (cyclin b31) cyclin-dependent protein kinase )
23 Proteins interacs with AT1G16330Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G48750 | Experimentalprotein complementation assay | FSW = 0.0681
| Unknown | CDC2 (CELL DIVISION CONTROL 2) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING / PROTEIN KINASE |
AT1G66750 | Experimentaltwo hybrid | FSW = 0.1778
| Unknown | CAK4 (CDK-ACTIVATING KINASE 4) KINASE/ PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE |
AT5G03415 | Experimentaltwo hybrid | FSW = 0.1045
| Unknown | DPB PROTEIN BINDING / PROTEIN HETERODIMERIZATION |
AT1G73690 | Experimentaltwo hybrid | FSW = 0.0693
| Unknown | CDKD11 (CYCLIN-DEPENDENT KINASE D11) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT3G54180 | Experimentalprotein complementation assay | FSW = 0.0964
| Unknown | CDKB11 (CYCLIN-DEPENDENT KINASE B11) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING |
AT2G38620 | Experimentalprotein complementation assay | FSW = 0.1739
| Unknown | CDKB12 (CYCLIN-DEPENDENT KINASE B12) CYCLIN BINDING / KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT1G76540 | Experimentalprotein complementation assay | FSW = 0.2182
| Unknown | CDKB21 (CYCLIN-DEPENDENT KINASE B21) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING |
AT1G20930 | Experimentalprotein complementation assaytwo hybrid | FSW = 0.2222
| Unknown | CDKB22 (CYCLIN-DEPENDENT KINASE B22) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE |
AT3G62870 | Predictedsynthetic growth defect | FSW = 0.0031
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT1G11680 | PredictedSynthetic Lethality | FSW = 0.0163
| Unknown | CYP51G1 (CYTOCHROME P450 51G1) OXYGEN BINDING / STEROL 14-DEMETHYLASE |
AT1G03920 | PredictedAffinity Capture-MSEnriched domain pairCo-expression | FSW = 0.0606
| Unknown | PROTEIN KINASE PUTATIVE |
AT1G10130 | Predictedinterologs mapping | FSW = 0.0143
| Unknown | ECA3 (ENDOPLASMIC RETICULUM-TYPE CALCIUM-TRANSPORTING ATPASE 3) CALCIUM-TRANSPORTING ATPASE/ CALMODULIN BINDING / MANGANESE-TRANSPORTING ATPASE/ PEROXIDASE |
AT2G27960 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MStwo hybrid | FSW = 0.1383
| Unknown | CKS1 (CYCLIN-DEPENDENT KINASE-SUBUNIT 1) CYCLIN-DEPENDENT PROTEIN KINASE/ PROTEIN BINDING |
AT1G26830 | PredictedAffinity Capture-MS | FSW = 0.0101
| Unknown | ATCUL3 (ARABIDOPSIS THALIANA CULLIN 3) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT4G11920 | PredictedAffinity Capture-MSAffinity Capture-Westernbiochemical | FSW = 0.0381
| Unknown | CCS52A2 SIGNAL TRANSDUCER |
AT4G19050 | PredictedAffinity Capture-MS | FSW = 0.1815
| Unknown | ATP BINDING / PROTEIN BINDING |
AT3G42660 | Predictedsynthetic growth defectSynthetic LethalityCo-expression | FSW = 0.0663
| Unknown | NUCLEOTIDE BINDING |
AT5G49510 | PredictedSynthetic LethalityCo-expression | FSW = 0.0445
| Unknown | PDF3 (PREFOLDIN 3) UNFOLDED PROTEIN BINDING |
AT5G23290 | PredictedSynthetic Lethality | FSW = 0.0448
| Unknown | PDF5 (PREFOLDIN 5) UNFOLDED PROTEIN BINDING |
AT3G22480 | PredictedSynthetic LethalityCo-expression | FSW = 0.0413
| Unknown | PREFOLDIN-RELATED KE2 FAMILY PROTEIN |
AT1G29990 | PredictedSynthetic Lethality | FSW = 0.0388
| Unknown | PDF6 (PREFOLDIN 6) UNFOLDED PROTEIN BINDING |
AT1G08780 | PredictedSynthetic Lethality | FSW = 0.0452
| Unknown | AIP3 (ABI3-INTERACTING PROTEIN 3) UNFOLDED PROTEIN BINDING |
AT5G16040 | PredictedGene fusion method | FSW = 0.0120
| Unknown | REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454