Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G11920 - ( CCS52A2 signal transducer )
55 Proteins interacs with AT4G11920Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G48750 | ExperimentalAffinity Capture-Western | FSW = 0.1013
| Unknown | CDC2 (CELL DIVISION CONTROL 2) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING / PROTEIN KINASE |
AT1G77390 | ExperimentalReconstituted Complex | FSW = 0.0560
| Unknown | CYCA12 (CYCLIN A12) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT2G20000 | Experimental | FSW = 0.1204
| Unknown | HBT (HOBBIT) BINDING |
SPAC19G12.0 | ExperimentalReconstituted Complex | FSW = 0.1333
| Unknown | HBT (HOBBIT) BINDING |
AT1G44110 | ExperimentalReconstituted Complex | FSW = 0.0890
| Unknown | CYCA11 (CYCLIN A11) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT4G37490 | ExperimentalReconstituted Complex | FSW = 0.0774
| Unknown | CYCB11 (CYCLIN B11) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT5G06150 | ExperimentalReconstituted Complex | FSW = 0.0190
| Unknown | CYC1BAT CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT1G20610 | Experimentalprotein complementation assay | FSW = 0.1027
| Unknown | CYCB23 (CYCLIN B23) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT3G02520 | PredictedAffinity Capture-MSAffinity Capture-Western | FSW = 0.0182
| Unknown | GRF7 (GENERAL REGULATORY FACTOR 7) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT5G38480 | PredictedAffinity Capture-MS | FSW = 0.0100
| Unknown | GRF3 (GENERAL REGULATORY FACTOR 3) ATP BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT5G52640 | PredictedSynthetic Lethalitysynthetic growth defect | FSW = 0.0084
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT4G26110 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0146
| Unknown | NAP11 (NUCLEOSOME ASSEMBLY PROTEIN11) DNA BINDING |
AT2G19480 | PredictedAffinity Capture-MS | FSW = 0.0227
| Unknown | NAP12 (NUCLEOSOME ASSEMBLY PROTEIN 12) DNA BINDING |
AT5G20890 | PredictedAffinity Capture-WesternAffinity Capture-MSinteraction prediction | FSW = 0.0145
| Unknown | CHAPERONIN PUTATIVE |
AT3G19210 | Predictedsynthetic growth defect | FSW = 0.1880
| Unknown | ATRAD54 (ARABIDOPSIS HOMOLOG OF RAD54) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT2G31970 | Predictedsynthetic growth defect | FSW = 0.1397
| Unknown | RAD50 ATP BINDING / NUCLEASE/ ZINC ION BINDING |
AT5G57450 | Predictedsynthetic growth defect | FSW = 0.1760
| Unknown | XRCC3 ATP BINDING / DAMAGED DNA BINDING / PROTEIN BINDING / SINGLE-STRANDED DNA BINDING |
AT3G25980 | PredictedSynthetic Lethalitysynthetic growth defect | FSW = 0.0709
| Unknown | MITOTIC SPINDLE CHECKPOINT PROTEIN PUTATIVE (MAD2) |
AT5G54260 | Predictedsynthetic growth defect | FSW = 0.1710
| Unknown | MRE11 (MEIOTIC RECOMBINATION 11) ENDONUCLEASE/ EXONUCLEASE/ HYDROLASE/ MANGANESE ION BINDING / PROTEIN SERINE/THREONINE PHOSPHATASE |
AT5G20850 | Predictedsynthetic growth defect | FSW = 0.1051
| Unknown | ATRAD51 ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING / SEQUENCE-SPECIFIC DNA BINDING |
AT4G33260 | PredictedPhenotypic SuppressionPhenotypic SuppressionGene neighbors methodPhylogenetic profile method | FSW = 0.1510
| Unknown | CDC202 SIGNAL TRANSDUCER |
AT1G07270 | PredictedPhenotypic Enhancementinterologs mapping | FSW = 0.1324
| Unknown | CELL DIVISION CONTROL PROTEIN CDC6B PUTATIVE (CDC6B) |
AT1G78770 | PredictedAffinity Capture-Westerninteraction prediction | FSW = 0.0446
| Unknown | CELL DIVISION CYCLE FAMILY PROTEIN |
AT3G11910 | PredictedAffinity Capture-MS | FSW = 0.0133
| Unknown | UBP13 (UBIQUITIN-SPECIFIC PROTEASE 13) UBIQUITIN THIOLESTERASE/ UBIQUITIN-SPECIFIC PROTEASE |
AT1G04020 | Predictedsynthetic growth defect | FSW = 0.1824
| Unknown | BARD1 (BREAST CANCER ASSOCIATED RING 1) DNA BINDING / TRANSCRIPTION COACTIVATOR |
AT1G04730 | Predictedsynthetic growth defect | FSW = 0.1694
| Unknown | AAA-TYPE ATPASE FAMILY PROTEIN |
AT1G66740 | Predictedsynthetic growth defect | FSW = 0.0992
| Unknown | SGA2 |
AT1G67190 | PredictedSynthetic Lethality | FSW = 0.1735
| Unknown | F-BOX FAMILY PROTEIN |
AT1G80410 | Predictedsynthetic growth defect | FSW = 0.0978
| Unknown | EMB2753 (EMBRYO DEFECTIVE 2753) BINDING |
AT2G02760 | Predictedsynthetic growth defect | FSW = 0.1231
| Unknown | ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2) UBIQUITIN-PROTEIN LIGASE |
AT2G44150 | PredictedSynthetic Lethality | FSW = 0.0412
| Unknown | ASHH3 (HISTONE-LYSINE N-METHYLTRANSFERASE ASHH3) HISTONE-LYSINE N-METHYLTRANSFERASE |
AT2G44580 | Predictedsynthetic growth defect | FSW = 0.1748
| Unknown | PROTEIN BINDING / ZINC ION BINDING |
AT3G02820 | PredictedSynthetic Lethalitysynthetic growth defectinteraction prediction | FSW = 0.2370
| Unknown | ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN |
AT3G42660 | Predictedsynthetic growth defect | FSW = 0.1999
| Unknown | NUCLEOTIDE BINDING |
AT3G48150 | PredictedAffinity Capture-WesternAffinity Capture-Westerninteraction prediction | FSW = 0.0598
| Unknown | APC8 (ANAPHASE-PROMOTING COMPLEX SUBUNIT 8) BINDING |
AT4G25120 | Predictedsynthetic growth defect | FSW = 0.1786
| Unknown | ATP BINDING / ATP-DEPENDENT DNA HELICASE/ DNA BINDING / HYDROLASE |
AT5G13780 | Predictedsynthetic growth defect | FSW = 0.1254
| Unknown | GCN5-RELATED N-ACETYLTRANSFERASE PUTATIVE |
AT5G26680 | Predictedsynthetic growth defect | FSW = 0.1425
| Unknown | ENDONUCLEASE PUTATIVE |
AT5G19820 | PredictedAffinity Capture-Western | FSW = 0.0051
| Unknown | EMB2734 (EMBRYO DEFECTIVE 2734) BINDING / LYASE |
AT5G26360 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0136
| Unknown | CHAPERONIN PUTATIVE |
AT1G16330 | PredictedAffinity Capture-MSAffinity Capture-Westernbiochemical | FSW = 0.0381
| Unknown | CYCB31 (CYCLIN B31) CYCLIN-DEPENDENT PROTEIN KINASE |
AT3G19420 | PredictedbiochemicalSynthetic Lethalityinteraction prediction | FSW = 0.0248
| Unknown | ATPEN2 (ARABIDOPSIS THALIANA PTEN 2) PHOSPHATASE/ PROTEIN TYROSINE PHOSPHATASE |
AT5G25380 | Predictedin vivoin vitroin vitroin vivoCo-expression | FSW = 0.0291
| Unknown | CYCA21 (CYCLIN A21) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT3G16320 | Predictedin vivoCo-expression | FSW = 0.1333
| Unknown | CDC27A BINDING |
AT3G07120 | Predictedsynthetic growth defect | FSW = 0.2392
| Unknown | ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEIN |
AT2G23420 | Predictedsynthetic growth defect | FSW = 0.2140
| Unknown | NAPRT2 (NICOTINATE PHOSPHORIBOSYLTRANSFERASE 2) NICOTINATE PHOSPHORIBOSYLTRANSFERASE |
AT1G14400 | Predictedsynthetic growth defect | FSW = 0.1324
| Unknown | UBC1 (UBIQUITIN CARRIER PROTEIN 1) UBIQUITIN-PROTEIN LIGASE |
AT5G06600 | Predictedinteraction prediction | FSW = 0.0148
| Unknown | UBP12 (UBIQUITIN-SPECIFIC PROTEASE 12) UBIQUITIN THIOLESTERASE/ UBIQUITIN-SPECIFIC PROTEASE |
AT5G26900 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1944
| Unknown | WD-40 REPEAT FAMILY PROTEIN |
AT5G27080 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1955
| Unknown | WD-40 REPEAT FAMILY PROTEIN |
AT4G22910 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.3062
| Unknown | FZR2 (FIZZY-RELATED 2) SIGNAL TRANSDUCER |
AT5G13840 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2041
| Unknown | FZR3 (FIZZY-RELATED 3) SIGNAL TRANSDUCER |
AT4G33270 | PredictedGene neighbors methodPhylogenetic profile method | FSW = 0.1901
| Unknown | CDC201 SIGNAL TRANSDUCER |
AT3G25670 | PredictedGene fusion method | FSW = 0.0373
| Unknown | LEUCINE-RICH REPEAT FAMILY PROTEIN |
AT4G24710 | PredictedGene fusion method | FSW = 0.0296
| Unknown | ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454