Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G44580 - ( protein binding / zinc ion binding )
119 Proteins interacs with AT2G44580Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G20010 | PredictedSynthetic Lethality | FSW = 0.0535
| Unknown | TUB5 STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT3G42050 | PredictedSynthetic Lethalityinteraction prediction | FSW = 0.0133
| Unknown | VACUOLAR ATP SYNTHASE SUBUNIT H FAMILY PROTEIN |
AT2G17360 | PredictedSynthetic Lethality | FSW = 0.0047
| Unknown | 40S RIBOSOMAL PROTEIN S4 (RPS4A) |
AT4G02620 | Predictedinteraction prediction | FSW = 0.0276
| Unknown | VACUOLAR ATPASE SUBUNIT F FAMILY PROTEIN |
AT2G30970 | Predictedsynthetic growth defect | FSW = 0.0276
| Unknown | ASP1 (ASPARTATE AMINOTRANSFERASE 1) L-ASPARTATE2-OXOGLUTARATE AMINOTRANSFERASE |
AT3G60840 | Predictedsynthetic growth defect | FSW = 0.1540
| Unknown | MAP65-4 (MICROTUBULE-ASSOCIATED PROTEIN 65-4) |
AT2G38020 | Predictedsynthetic growth defect | FSW = 0.0837
| Unknown | VCL1 (VACUOLELESS 1) |
AT1G18080 | Predictedsynthetic growth defect | FSW = 0.0227
| Unknown | ATARCA NUCLEOTIDE BINDING |
AT5G43530 | Predictedsynthetic growth defect | FSW = 0.2598
| Unknown | SNF2 DOMAIN-CONTAINING PROTEIN / HELICASE DOMAIN-CONTAINING PROTEIN / RING FINGER DOMAIN-CONTAINING PROTEIN |
AT2G28190 | Predictedsynthetic growth defect | FSW = 0.2156
| Unknown | CSD2 (COPPER/ZINC SUPEROXIDE DISMUTASE 2) SUPEROXIDE DISMUTASE |
AT3G11630 | PredictedSynthetic Lethalitysynthetic growth defectPhenotypic Enhancementinteraction prediction | FSW = 0.1349
| Unknown | 2-CYS PEROXIREDOXIN CHLOROPLAST (BAS1) |
AT1G12520 | PredictedSynthetic Lethalitysynthetic growth defectinteraction prediction | FSW = 0.2823
| Unknown | ATCCS (COPPER CHAPERONE FOR SOD1) SUPEROXIDE DISMUTASE/ SUPEROXIDE DISMUTASE COPPER CHAPERONE |
AT1G71440 | PredictedSynthetic Lethalityinteraction prediction | FSW = 0.1711
| Unknown | PFI (PFIFFERLING) |
AT5G12250 | PredictedSynthetic Lethality | FSW = 0.0551
| Unknown | TUB6 (BETA-6 TUBULIN) STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT5G09260 | Predictedsynthetic growth defect | FSW = 0.1721
| Unknown | VPS202 (VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 202) |
AT1G07670 | Predictedsynthetic growth defect | FSW = 0.0601
| Unknown | CALCIUM-TRANSPORTING ATPASE |
AT1G64230 | Predictedsynthetic growth defectEnriched domain pairCo-expression | FSW = 0.0560
| Unknown | UBIQUITIN-CONJUGATING ENZYME PUTATIVE |
AT3G01310 | Predictedsynthetic growth defect | FSW = 0.0714
| Unknown | ACID PHOSPHATASE/ OXIDOREDUCTASE/ TRANSITION METAL ION BINDING |
AT5G63880 | Predictedsynthetic growth defect | FSW = 0.1245
| Unknown | VPS201 |
AT4G26720 | PredictedSynthetic Lethality | FSW = 0.1447
| Unknown | PPX1 (PROTEIN PHOSPHATASE X 1) PROTEIN SERINE/THREONINE PHOSPHATASE |
AT4G05190 | Predictedsynthetic growth defectSynthetic Lethality | FSW = 0.2825
| Unknown | ATK5 (ARABIDOPSIS THALIANA KINESIN 5) MICROTUBULE MOTOR |
AT5G67270 | Predictedinteraction predictionSynthetic LethalitySynthetic LethalitySynthetic LethalitySynthetic LethalityPhenotypic Enhancement | FSW = 0.3936
| Unknown | ATEB1C (MICROTUBULE END BINDING PROTEIN 1) MICROTUBULE BINDING |
AT2G24490 | PredictedPhenotypic Enhancement | FSW = 0.1368
| Unknown | RPA2 (REPLICON PROTEIN A2) PROTEIN BINDING |
AT1G17790 | Predictedsynthetic growth defect | FSW = 0.0615
| Unknown | DNA-BINDING BROMODOMAIN-CONTAINING PROTEIN |
AT2G38810 | Predictedinteraction prediction | FSW = 0.1271
| Unknown | HTA8 (HISTONE H2A 8) DNA BINDING |
AT1G44900 | PredictedSynthetic Lethality | FSW = 0.0370
| Unknown | ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE |
AT1G02680 | PredictedPhenotypic Enhancement | FSW = 0.0546
| Unknown | TAF13 (TBP-ASSOCIATED FACTOR 13) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR |
AT5G64630 | Predictedsynthetic growth defect | FSW = 0.1394
| Unknown | FAS2 (FASCIATA 2) NUCLEOTIDE BINDING / PROTEIN BINDING |
AT1G19120 | Predictedsynthetic growth defect | FSW = 0.1990
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
AT2G03870 | Predictedsynthetic growth defect | FSW = 0.1977
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
AT3G18130 | Predictedsynthetic growth defect | FSW = 0.0233
| Unknown | RACK1C_AT (RECEPTOR FOR ACTIVATED C KINASE 1 C) NUCLEOTIDE BINDING |
AT2G35670 | Predictedsynthetic growth defect | FSW = 0.1937
| Unknown | FIS2 (FERTILIZATION INDEPENDENT SEED 2) TRANSCRIPTION FACTOR |
AT5G22750 | Predictedsynthetic growth defect | FSW = 0.2035
| Unknown | RAD5 ATP BINDING / ATP-DEPENDENT HELICASE/ DNA BINDING / HELICASE/ HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING / PROTEIN BINDING / ZINC ION BINDING |
AT2G29570 | PredictedAffinity Capture-MS | FSW = 0.0310
| Unknown | PCNA2 (PROLIFERATING CELL NUCLEAR ANTIGEN 2) DNA BINDING / DNA POLYMERASE PROCESSIVITY FACTOR |
AT1G07370 | PredictedPhenotypic Enhancement | FSW = 0.2947
| Unknown | PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN) DNA BINDING / DNA POLYMERASE PROCESSIVITY FACTOR/ PROTEIN BINDING |
AT1G65470 | Predictedsynthetic growth defect | FSW = 0.1951
| Unknown | FAS1 (FASCIATA 1) HISTONE BINDING |
AT2G13370 | PredictedSynthetic Lethalitysynthetic growth defectinteraction prediction | FSW = 0.1190
| Unknown | CHR5 (CHROMATIN REMODELING 5) ATP BINDING / DNA BINDING / CHROMATIN BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT2G27470 | PredictedSynthetic Lethalityinteraction prediction | FSW = 0.0559
| Unknown | NF-YB11 (NUCLEAR FACTOR Y SUBUNIT B11) TRANSCRIPTION FACTOR |
AT3G19210 | PredictedSynthetic Lethalitysynthetic growth defectinteraction prediction | FSW = 0.4030
| Unknown | ATRAD54 (ARABIDOPSIS HOMOLOG OF RAD54) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT1G06230 | Predictedsynthetic growth defect | FSW = 0.0698
| Unknown | GTE4 (GLOBAL TRANSCRIPTION FACTOR GROUP E 4) DNA BINDING |
AT1G35940 | PredictedSynthetic Lethalitysynthetic growth defect | FSW = 0.2484
| Unknown | GTE4 (GLOBAL TRANSCRIPTION FACTOR GROUP E 4) DNA BINDING |
AT1G10130 | Predictedsynthetic growth defect | FSW = 0.0635
| Unknown | ECA3 (ENDOPLASMIC RETICULUM-TYPE CALCIUM-TRANSPORTING ATPASE 3) CALCIUM-TRANSPORTING ATPASE/ CALMODULIN BINDING / MANGANESE-TRANSPORTING ATPASE/ PEROXIDASE |
AT1G14690 | Predictedsynthetic growth defect | FSW = 0.1452
| Unknown | MAP65-7 (MICROTUBULE-ASSOCIATED PROTEIN 65-7) |
AT3G47690 | PredictedSynthetic LethalitySynthetic LethalitySynthetic LethalitySynthetic Lethality | FSW = 0.3226
| Unknown | ATEB1A MICROTUBULE BINDING |
AT2G05170 | Predictedsynthetic growth defect | FSW = 0.0532
| Unknown | ATVPS11 BINDING / PROTEIN BINDING / TRANSPORTER/ ZINC ION BINDING |
AT2G31970 | Predictedinteraction predictionSynthetic Lethalitysynthetic growth defect | FSW = 0.3136
| Unknown | RAD50 ATP BINDING / NUCLEASE/ ZINC ION BINDING |
AT5G66130 | Predictedsynthetic growth defectPhenotypic Enhancement | FSW = 0.2246
| Unknown | ATRAD17 (ARABIDOPSIS THALIANA RADIATION SENSITIVE) |
AT5G57450 | PredictedSynthetic Lethalityinteraction prediction | FSW = 0.4036
| Unknown | XRCC3 ATP BINDING / DAMAGED DNA BINDING / PROTEIN BINDING / SINGLE-STRANDED DNA BINDING |
AT1G16190 | PredictedSynthetic Lethalityinteraction prediction | FSW = 0.0451
| Unknown | DNA REPAIR PROTEIN RAD23 PUTATIVE |
AT3G25980 | PredictedSynthetic Lethalitysynthetic growth defectPhenotypic Enhancementinteraction prediction | FSW = 0.2009
| Unknown | MITOTIC SPINDLE CHECKPOINT PROTEIN PUTATIVE (MAD2) |
AT2G37560 | PredictedSynthetic Lethality | FSW = 0.1105
| Unknown | ORC2 (ORIGIN RECOGNITION COMPLEX SECOND LARGEST SUBUNIT 2) DNA REPLICATION ORIGIN BINDING / PROTEIN BINDING |
AT5G54260 | PredictedSynthetic Lethalitysynthetic growth defectinteraction prediction | FSW = 0.3508
| Unknown | MRE11 (MEIOTIC RECOMBINATION 11) ENDONUCLEASE/ EXONUCLEASE/ HYDROLASE/ MANGANESE ION BINDING / PROTEIN SERINE/THREONINE PHOSPHATASE |
AT2G36200 | PredictedSynthetic LethalitySynthetic LethalitySynthetic Lethalityinteraction prediction | FSW = 0.3099
| Unknown | KINESIN MOTOR PROTEIN-RELATED |
AT1G77140 | Predictedsynthetic growth defect | FSW = 0.0856
| Unknown | VPS45 (VACUOLAR PROTEIN SORTING 45) PROTEIN TRANSPORTER |
AT5G38470 | PredictedSynthetic Lethality | FSW = 0.0623
| Unknown | DNA REPAIR PROTEIN RAD23 PUTATIVE |
AT5G20850 | PredictedSynthetic Lethalitysynthetic growth defectinteraction prediction | FSW = 0.2671
| Unknown | ATRAD51 ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING / SEQUENCE-SPECIFIC DNA BINDING |
AT3G54860 | Predictedsynthetic growth defect | FSW = 0.1449
| Unknown | VACUOLAR PROTEIN SORTING PROTEIN PUTATIVE |
AT1G08830 | Predictedsynthetic growth defect | FSW = 0.1855
| Unknown | CSD1 (COPPER/ZINC SUPEROXIDE DISMUTASE 1) SUPEROXIDE DISMUTASE |
AT1G04730 | PredictedReconstituted ComplexAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSReconstituted Complex | FSW = 0.7726
| Unknown | AAA-TYPE ATPASE FAMILY PROTEIN |
AT1G63160 | PredictedAffinity Capture-Western | FSW = 0.1423
| Unknown | REPLICATION FACTOR C 40 KDA PUTATIVE |
AT5G52220 | PredictedAffinity Capture-Western | FSW = 0.0290
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 18 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S CHROMOSOME TRANSMISSION FIDELITY PROTEIN 8 (INTERPROIPR018607) HAS 85 BLAST HITS TO 85 PROTEINS IN 45 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 54 FUNGI - 13 PLANTS - 11 VIRUSES - 0 OTHER EUKARYOTES - 7 (SOURCE NCBI BLINK) |
AT1G04020 | Predictedsynthetic growth defect | FSW = 0.2915
| Unknown | BARD1 (BREAST CANCER ASSOCIATED RING 1) DNA BINDING / TRANSCRIPTION COACTIVATOR |
AT1G08780 | Predictedinteraction predictionSynthetic Lethalitysynthetic growth defectPhenotypic Enhancement | FSW = 0.2052
| Unknown | AIP3 (ABI3-INTERACTING PROTEIN 3) UNFOLDED PROTEIN BINDING |
AT1G10930 | PredictedSynthetic Lethalitysynthetic growth defectinteraction prediction | FSW = 0.2603
| Unknown | RECQ4A ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING |
AT1G29990 | PredictedSynthetic Lethalitysynthetic growth defectinteraction prediction | FSW = 0.1962
| Unknown | PDF6 (PREFOLDIN 6) UNFOLDED PROTEIN BINDING |
AT1G52740 | PredictedSynthetic Lethalitysynthetic growth defect | FSW = 0.2162
| Unknown | HTA9 (HISTONE H2A PROTEIN 9) DNA BINDING |
AT1G60490 | Predictedsynthetic growth defect | FSW = 0.1148
| Unknown | ATVPS34 1-PHOSPHATIDYLINOSITOL-3-KINASE/ BINDING / INOSITOL OR PHOSPHATIDYLINOSITOL KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR |
AT1G61040 | PredictedSynthetic Lethalityinteraction prediction | FSW = 0.1099
| Unknown | VIP5 (VERNALIZATION INDEPENDENCE 5) DNA BINDING |
AT1G66740 | Predictedsynthetic growth defect | FSW = 0.3484
| Unknown | SGA2 |
AT1G67190 | Predictedsynthetic growth defect | FSW = 0.3140
| Unknown | F-BOX FAMILY PROTEIN |
AT1G79890 | Predictedinteraction predictionSynthetic Lethalitysynthetic growth defectPhenotypic Enhancement | FSW = 0.3071
| Unknown | HELICASE-RELATED |
AT1G80410 | Predictedsynthetic growth defect | FSW = 0.3035
| Unknown | EMB2753 (EMBRYO DEFECTIVE 2753) BINDING |
AT2G02760 | Predictedsynthetic growth defect | FSW = 0.2757
| Unknown | ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2) UBIQUITIN-PROTEIN LIGASE |
AT2G33560 | PredictedSynthetic Lethalitysynthetic growth defectinteraction prediction | FSW = 0.1136
| Unknown | SPINDLE CHECKPOINT PROTEIN-RELATED |
AT1G04950 | PredictedPhenotypic Enhancement | FSW = 0.0559
| Unknown | TAF6 (TBP-ASSOCIATED FACTOR 6) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ TRANSCRIPTION INITIATION FACTOR |
AT1G29150 | PredictedPhenotypic Enhancement | FSW = 0.0994
| Unknown | ATS9 (ARABIDOPSIS NON-ATPASE SUBUNIT 9) |
AT1G54390 | PredictedPhenotypic Enhancement | FSW = 0.0669
| Unknown | PHD FINGER PROTEIN-RELATED |
AT1G60620 | PredictedPhenotypic Enhancement | FSW = 0.0420
| Unknown | ATRPAC43 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION |
AT2G34770 | PredictedPhenotypic Enhancement | FSW = 0.0213
| Unknown | FAH1 (FATTY ACID HYDROXYLASE 1) CATALYTIC/ FATTY ACID ALPHA-HYDROXYLASE |
AT2G44150 | PredictedSynthetic LethalitySynthetic Lethalityinteraction prediction | FSW = 0.1690
| Unknown | ASHH3 (HISTONE-LYSINE N-METHYLTRANSFERASE ASHH3) HISTONE-LYSINE N-METHYLTRANSFERASE |
AT3G02820 | Predictedinteraction predictionSynthetic LethalitySynthetic LethalitySynthetic Lethalitysynthetic growth defectPhenotypic EnhancementPhenotypic Enhancement | FSW = 0.4542
| Unknown | ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN |
AT3G18860 | PredictedPhenotypic Enhancement | FSW = 0.1820
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT3G22480 | PredictedSynthetic Lethalityinteraction prediction | FSW = 0.2151
| Unknown | PREFOLDIN-RELATED KE2 FAMILY PROTEIN |
AT3G25100 | PredictedSynthetic Lethality | FSW = 0.1871
| Unknown | CDC45 (CELL DIVISION CYCLE 45) |
AT3G26020 | PredictedPhenotypic Enhancement | FSW = 0.2055
| Unknown | SERINE/THREONINE PROTEIN PHOSPHATASE 2A (PP2A) REGULATORY SUBUNIT B PUTATIVE |
AT3G42660 | Predictedinteraction predictionSynthetic LethalitySynthetic Lethality | FSW = 0.6383
| Unknown | NUCLEOTIDE BINDING |
AT3G49650 | PredictedSynthetic Lethality | FSW = 0.0514
| Unknown | KINESIN MOTOR PROTEIN-RELATED |
AT3G58560 | Predictedsynthetic growth defect | FSW = 0.2260
| Unknown | ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN |
AT4G16970 | PredictedSynthetic Lethality | FSW = 0.0651
| Unknown | ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT4G25120 | Predictedinteraction predictionSynthetic LethalitySynthetic LethalitySynthetic Lethalitysynthetic growth defectPhenotypic Enhancement | FSW = 0.3041
| Unknown | ATP BINDING / ATP-DEPENDENT DNA HELICASE/ DNA BINDING / HYDROLASE |
AT4G38630 | PredictedSynthetic Lethalitysynthetic growth defectPhenotypic Enhancementinteraction prediction | FSW = 0.2537
| Unknown | RPN10 (REGULATORY PARTICLE NON-ATPASE 10) PEPTIDE RECEPTOR |
AT5G09740 | Predictedsynthetic growth defect | FSW = 0.2596
| Unknown | HAM2 (HISTONE ACETYLTRANSFERASE OF THE MYST FAMILY 2) H3/H4 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE/ NUCLEIC ACID BINDING / ZINC ION BINDING |
AT5G10790 | PredictedPhenotypic Enhancement | FSW = 0.1587
| Unknown | UBP22 (UBIQUITIN-SPECIFIC PROTEASE 22) UBIQUITIN THIOLESTERASE/ UBIQUITIN-SPECIFIC PROTEASE/ ZINC ION BINDING |
AT5G10960 | Predictedsynthetic growth defect | FSW = 0.2342
| Unknown | CCR4-NOT TRANSCRIPTION COMPLEX PROTEIN PUTATIVE |
AT5G13780 | Predictedsynthetic growth defectPhenotypic Enhancement | FSW = 0.3470
| Unknown | GCN5-RELATED N-ACETYLTRANSFERASE PUTATIVE |
AT5G14530 | PredictedPhenotypic Enhancement | FSW = 0.0157
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT5G23290 | Predictedinteraction predictionSynthetic Lethalitysynthetic growth defectPhenotypic Enhancement | FSW = 0.2212
| Unknown | PDF5 (PREFOLDIN 5) UNFOLDED PROTEIN BINDING |
AT5G26680 | PredictedSynthetic LethalitySynthetic Lethalitysynthetic growth defectinteraction prediction | FSW = 0.4139
| Unknown | ENDONUCLEASE PUTATIVE |
AT5G27740 | PredictedAffinity Capture-MS | FSW = 0.1663
| Unknown | EMB2775 (EMBRYO DEFECTIVE 2775) DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT5G45600 | PredictedPhenotypic Enhancementsynthetic growth defect | FSW = 0.2791
| Unknown | GAS41 PROTEIN BINDING |
AT5G49510 | PredictedSynthetic Lethalitysynthetic growth defectinteraction prediction | FSW = 0.2199
| Unknown | PDF3 (PREFOLDIN 3) UNFOLDED PROTEIN BINDING |
AT3G12400 | Predictedsynthetic growth defect | FSW = 0.1924
| Unknown | ELC UBIQUITIN BINDING |
AT3G20630 | Predictedsynthetic growth defect | FSW = 0.0625
| Unknown | UBP14 (UBIQUITIN-SPECIFIC PROTEASE 14) UBIQUITIN-SPECIFIC PROTEASE |
AT4G11920 | Predictedsynthetic growth defect | FSW = 0.1748
| Unknown | CCS52A2 SIGNAL TRANSDUCER |
AT4G19003 | Predictedsynthetic growth defect | FSW = 0.1708
| Unknown | VPS25 |
AT4G27040 | Predictedsynthetic growth defect | FSW = 0.1602
| Unknown | VPS22 |
AT4G27180 | PredictedSynthetic Lethalitysynthetic growth defect | FSW = 0.3259
| Unknown | ATK2 (ARABIDOPSIS THALIANA KINESIN 2) MICROTUBULE BINDING / MICROTUBULE MOTOR |
AT5G10270 | Predictedsynthetic growth defect | FSW = 0.1391
| Unknown | CDKC1 (CYCLIN-DEPENDENT KINASE C1) KINASE |
AT5G15070 | Predictedsynthetic growth defect | FSW = 0.0225
| Unknown | ACID PHOSPHATASE/ OXIDOREDUCTASE/ TRANSITION METAL ION BINDING |
AT5G27970 | Predictedsynthetic growth defect | FSW = 0.2276
| Unknown | BINDING |
AT5G41700 | Predictedsynthetic growth defect | FSW = 0.1071
| Unknown | UBC8 (UBIQUITIN CONJUGATING ENZYME 8) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT2G23420 | Predictedsynthetic growth defect | FSW = 0.2231
| Unknown | NAPRT2 (NICOTINATE PHOSPHORIBOSYLTRANSFERASE 2) NICOTINATE PHOSPHORIBOSYLTRANSFERASE |
AT1G15920 | Predictedsynthetic growth defect | FSW = 0.2529
| Unknown | CCR4-NOT TRANSCRIPTION COMPLEX PROTEIN PUTATIVE |
AT1G14400 | Predictedsynthetic growth defectEnriched domain pairCo-expression | FSW = 0.2493
| Unknown | UBC1 (UBIQUITIN CARRIER PROTEIN 1) UBIQUITIN-PROTEIN LIGASE |
AT5G04920 | Predictedsynthetic growth defect | FSW = 0.1802
| Unknown | VACUOLAR PROTEIN SORTING 36 FAMILY PROTEIN / VPS36 FAMILY PROTEIN |
AT2G18000 | Predictedsynthetic growth defect | FSW = 0.2307
| Unknown | TAF14 (TBP-ASSOCIATED FACTOR 14) |
AT5G16270 | PredictedSynthetic Lethality | FSW = 0.1064
| Unknown | SYN4 (SISTER CHROMATID COHESION 1 PROTEIN 4) |
AT3G21350 | Predictedtwo hybridtwo hybridinteraction prediction | FSW = 0.0055
| Unknown | RNA POLYMERASE TRANSCRIPTIONAL REGULATION MEDIATOR-RELATED |
AT5G54670 | Predictedinteraction prediction | FSW = 0.1889
| Unknown | ATK3 (ARABIDOPSIS THALIANA KINESIN 3) ATPASE/ MICROTUBULE BINDING / MICROTUBULE MOTOR |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454