Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G54670 - ( ATK3 (ARABIDOPSIS THALIANA KINESIN 3) ATPase/ microtubule binding / microtubule motor )
35 Proteins interacs with AT5G54670Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT4G27180 | Experimentalin vitroReconstituted Complex | FSW = 0.5687
| Unknown | ATK2 (ARABIDOPSIS THALIANA KINESIN 2) MICROTUBULE BINDING / MICROTUBULE MOTOR |
AT4G14960 | PredictedPhenotypic Enhancement | FSW = 0.0828
| Unknown | TUA6 STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT1G61000 | Predictedinteraction prediction | FSW = 0.1341
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN MITOSIS LOCATED IN PLASMA MEMBRANE EXPRESSED IN CULTURED CELL CONTAINS INTERPRO DOMAIN/S KINETOCHORE PROTEIN NUF2 (INTERPROIPR005549) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS MYOSIN HEAVY CHAIN-RELATED (TAIRAT1G643301) HAS 41010 BLAST HITS TO 23184 PROTEINS IN 1264 SPECIES ARCHAE - 616 BACTERIA - 3998 METAZOA - 20566 FUNGI - 2893 PLANTS - 1316 VIRUSES - 149 OTHER EUKARYOTES - 11472 (SOURCE NCBI BLINK) |
AT1G07810 | Predictedinteraction prediction | FSW = 0.0111
| Unknown | ECA1 (ER-TYPE CA2+-ATPASE 1) CALCIUM-TRANSPORTING ATPASE |
AT3G60840 | Predictedinteraction prediction | FSW = 0.3333
| Unknown | MAP65-4 (MICROTUBULE-ASSOCIATED PROTEIN 65-4) |
AT3G22110 | Predictedinteraction prediction | FSW = 0.0609
| Unknown | PAC1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT2G28190 | Predictedinteraction prediction | FSW = 0.0633
| Unknown | CSD2 (COPPER/ZINC SUPEROXIDE DISMUTASE 2) SUPEROXIDE DISMUTASE |
AT3G54670 | Predictedinteraction prediction | FSW = 0.0330
| Unknown | TTN8 (TITAN8) ATP BINDING / TRANSPORTER |
AT3G48750 | Predictedinteraction prediction | FSW = 0.0150
| Unknown | CDC2 (CELL DIVISION CONTROL 2) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING / PROTEIN KINASE |
AT4G05190 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.5974
| Unknown | ATK5 (ARABIDOPSIS THALIANA KINESIN 5) MICROTUBULE MOTOR |
AT5G05620 | PredictedPhenotypic Enhancement | FSW = 0.0432
| Unknown | GCP2 (GAMMA-TUBULIN COMPLEX PROTEIN 2) GTP BINDING / GTPASE/ STRUCTURAL MOLECULE |
AT4G21270 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0483
| Unknown | ATK1 (ARABIDOPSIS THALIANA KINESIN 1) MICROTUBULE MOTOR/ MINUS-END-DIRECTED MICROTUBULE MOTOR |
AT3G25980 | Predictedinteraction prediction | FSW = 0.1231
| Unknown | MITOTIC SPINDLE CHECKPOINT PROTEIN PUTATIVE (MAD2) |
AT2G36200 | Predictedinteraction prediction | FSW = 0.3284
| Unknown | KINESIN MOTOR PROTEIN-RELATED |
AT3G57870 | PredictedPhenotypic Suppression | FSW = 0.0123
| Unknown | SCE1 (SUMO CONJUGATION ENZYME 1) SUMO LIGASE |
AT5G67320 | Predictedinteraction predictionCo-expression | FSW = 0.0911
| Unknown | HOS15 (HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 15) |
AT5G45010 | Predictedinteraction prediction | FSW = 0.0355
| Unknown | ATDSS1(V) (ARABIDOPSIS DSS1 HOMOLOG ON CHROMOSOME V) |
AT3G22480 | Predictedinteraction prediction | FSW = 0.1591
| Unknown | PREFOLDIN-RELATED KE2 FAMILY PROTEIN |
AT1G51710 | Predictedinteraction prediction | FSW = 0.0371
| Unknown | UBP6 (UBIQUITIN-SPECIFIC PROTEASE 6) CALMODULIN BINDING / UBIQUITIN-SPECIFIC PROTEASE |
AT5G49510 | Predictedinteraction prediction | FSW = 0.1843
| Unknown | PDF3 (PREFOLDIN 3) UNFOLDED PROTEIN BINDING |
AT5G13780 | Predictedinteraction prediction | FSW = 0.0730
| Unknown | GCN5-RELATED N-ACETYLTRANSFERASE PUTATIVE |
AT4G38630 | Predictedinteraction prediction | FSW = 0.0899
| Unknown | RPN10 (REGULATORY PARTICLE NON-ATPASE 10) PEPTIDE RECEPTOR |
AT2G33560 | Predictedinteraction prediction | FSW = 0.1400
| Unknown | SPINDLE CHECKPOINT PROTEIN-RELATED |
AT1G66740 | Predictedinteraction prediction | FSW = 0.0318
| Unknown | SGA2 |
AT1G29990 | Predictedinteraction prediction | FSW = 0.1623
| Unknown | PDF6 (PREFOLDIN 6) UNFOLDED PROTEIN BINDING |
AT2G15790 | Predictedinteraction prediction | FSW = 0.0302
| Unknown | SQN (SQUINT) PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
AT5G23290 | Predictedinteraction prediction | FSW = 0.1855
| Unknown | PDF5 (PREFOLDIN 5) UNFOLDED PROTEIN BINDING |
AT3G02820 | Predictedinteraction prediction | FSW = 0.1681
| Unknown | ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN |
AT1G08780 | Predictedinteraction prediction | FSW = 0.1867
| Unknown | AIP3 (ABI3-INTERACTING PROTEIN 3) UNFOLDED PROTEIN BINDING |
AT1G79890 | Predictedinteraction prediction | FSW = 0.2851
| Unknown | HELICASE-RELATED |
AT4G08960 | Predictedinteraction predictionCo-expression | FSW = 0.1106
| Unknown | PHOSPHOTYROSYL PHOSPHATASE ACTIVATOR (PTPA) FAMILY PROTEIN |
AT2G44580 | Predictedinteraction prediction | FSW = 0.1889
| Unknown | PROTEIN BINDING / ZINC ION BINDING |
AT2G28620 | Predictedinteraction prediction | FSW = 0.1333
| Unknown | KINESIN MOTOR PROTEIN-RELATED |
AT1G77740 | PredictedGene fusion method | FSW = 0.0539
| Unknown | 1-PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE PUTATIVE / PIP KINASE PUTATIVE / PTDINS(4)P-5-KINASE PUTATIVE / DIPHOSPHOINOSITIDE KINASE PUTATIVE |
AT3G53700 | PredictedGene fusion method | FSW = 0.0504
| Unknown | MEE40 (MATERNAL EFFECT EMBRYO ARREST 40) |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454