Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G33560 - ( spindle checkpoint protein-related )
97 Proteins interacs with AT2G33560Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G25980 | Experimentaltwo hybridprotein complementation assay | FSW = 0.1703
| Unknown | MITOTIC SPINDLE CHECKPOINT PROTEIN PUTATIVE (MAD2) |
AT3G19590 | Experimentaltwo hybridprotein complementation assay | FSW = 0.0418
| Unknown | WD-40 REPEAT FAMILY PROTEIN / MITOTIC CHECKPOINT PROTEIN PUTATIVE |
AT2G33120 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0230
| Unknown | SAR1 (SYNAPTOBREVIN-RELATED PROTEIN 1) |
AT1G20010 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0748
| Unknown | TUB5 STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT1G07660 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0745
| Unknown | HISTONE H4 |
AT4G16660 | PredictedSynthetic Lethality | FSW = 0.1312
| Unknown | HEAT SHOCK PROTEIN 70 PUTATIVE / HSP70 PUTATIVE |
AT5G10350 | PredictedAffinity Capture-MSCo-crystal StructureAffinity Capture-MSCo-purificationAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternCo-crystal StructureCo-purificationPhenotypic Enhancement | FSW = 0.2596
| Unknown | POLYADENYLATE-BINDING PROTEIN FAMILY PROTEIN / PABP FAMILY PROTEIN |
AT3G22890 | PredictedAffinity Capture-MS | FSW = 0.0342
| Unknown | APS1 (ATP SULFURYLASE 1) SULFATE ADENYLYLTRANSFERASE (ATP) |
AT2G45960 | PredictedAffinity Capture-MS | FSW = 0.0488
| Unknown | PIP1B (NAMED PLASMA MEMBRANE INTRINSIC PROTEIN 1B) WATER CHANNEL |
AT1G22170 | Predictedsynthetic growth defect | FSW = 0.0537
| Unknown | PHOSPHOGLYCERATE/BISPHOSPHOGLYCERATE MUTASE FAMILY PROTEIN |
AT3G44610 | PredictedAffinity Capture-MS | FSW = 0.0137
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT2G45300 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSPhenotypic Enhancement | FSW = 0.1627
| Unknown | 3-PHOSPHOSHIKIMATE 1-CARBOXYVINYLTRANSFERASE / 5-ENOLPYRUVYLSHIKIMATE-3-PHOSPHATE / EPSP SYNTHASE |
AT1G10070 | PredictedAffinity Capture-MS | FSW = 0.0740
| Unknown | ATBCAT-2 (ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2) BRANCHED-CHAIN-AMINO-ACID TRANSAMINASE/ CATALYTIC |
AT1G71440 | Predictedsynthetic growth defect | FSW = 0.1485
| Unknown | PFI (PFIFFERLING) |
AT3G48750 | Predictedtwo hybrid | FSW = 0.0258
| Unknown | CDC2 (CELL DIVISION CONTROL 2) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING / PROTEIN KINASE |
AT5G12250 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0561
| Unknown | TUB6 (BETA-6 TUBULIN) STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT3G02600 | PredictedAffinity Capture-MS | FSW = 0.0659
| Unknown | LPP3 (LIPID PHOSPHATE PHOSPHATASE 3) PHOSPHATIDATE PHOSPHATASE |
AT3G55810 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0247
| Unknown | PYRUVATE KINASE PUTATIVE |
AT4G36640 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSCo-crystal Structure | FSW = 0.0996
| Unknown | SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLYCERIDE TRANSFER FAMILY PROTEIN |
AT5G52640 | Predictedsynthetic growth defect | FSW = 0.0138
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT5G23900 | PredictedReconstituted ComplexSynthetic RescueReconstituted Complextwo hybridSynthetic Rescue | FSW = 0.0360
| Unknown | 60S RIBOSOMAL PROTEIN L13 (RPL13D) |
AT5G26340 | Predictedinterologs mappingSynthetic Rescue | FSW = 0.0391
| Unknown | MSS1 CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ HEXOSEHYDROGEN SYMPORTER/ HIGH-AFFINITY HYDROGENGLUCOSE SYMPORTER/ SUGARHYDROGEN SYMPORTER |
AT3G11730 | PredictedAffinity Capture-MS | FSW = 0.0281
| Unknown | ATFP8 GTP BINDING / GTP-DEPENDENT PROTEIN BINDING / MYOSIN XI TAIL BINDING |
AT4G23460 | Predictedtwo hybrid | FSW = 0.0127
| Unknown | BETA-ADAPTIN PUTATIVE |
AT5G19990 | PredictedAffinity Capture-MS | FSW = 0.0118
| Unknown | RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A) ATPASE |
AT4G25740 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2089
| Unknown | 40S RIBOSOMAL PROTEIN S10 (RPS10A) |
AT5G48880 | Predictedfar western blotting | FSW = 0.0797
| Unknown | PKT2 (PEROXISOMAL 3-KETO-ACYL-COA THIOLASE 2) ACETYL-COA C-ACYLTRANSFERASE/ CATALYTIC |
AT2G45490 | Predictedbiochemical | FSW = 0.0256
| Unknown | ATAUR3 (ATAURORA3) ATP BINDING / HISTONE KINASE(H3-S10 SPECIFIC) / PROTEIN KINASE |
AT3G60180 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternCo-purificationCo-crystal Structure | FSW = 0.2353
| Unknown | URIDYLATE KINASE PUTATIVE / URIDINE MONOPHOSPHATE KINASE PUTATIVE / UMP KINASE PUTATIVE |
AT4G05190 | PredictedSynthetic LethalitySynthetic LethalitySynthetic Lethality | FSW = 0.1571
| Unknown | ATK5 (ARABIDOPSIS THALIANA KINESIN 5) MICROTUBULE MOTOR |
AT5G67270 | PredictedSynthetic LethalitySynthetic LethalitySynthetic LethalitySynthetic LethalityPhenotypic Enhancementinteraction prediction | FSW = 0.0859
| Unknown | ATEB1C (MICROTUBULE END BINDING PROTEIN 1) MICROTUBULE BINDING |
AT1G02680 | PredictedPhenotypic Enhancement | FSW = 0.0145
| Unknown | TAF13 (TBP-ASSOCIATED FACTOR 13) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR |
AT4G29390 | PredictedAffinity Capture-MS | FSW = 0.0356
| Unknown | 40S RIBOSOMAL PROTEIN S30 (RPS30B) |
AT5G27720 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0331
| Unknown | EMB1644 (EMBRYO DEFECTIVE 1644) |
AT2G28740 | PredictedAffinity Capture-MSCo-crystal Structuretwo hybridAffinity Capture-MS | FSW = 0.1667
| Unknown | HIS4 DNA BINDING |
AT4G38130 | PredictedAffinity Capture-WesternCo-purification | FSW = 0.0144
| Unknown | HD1 (HISTONE DEACETYLASE 1) BASAL TRANSCRIPTION REPRESSOR/ HISTONE DEACETYLASE/ PROTEIN BINDING |
AT2G47620 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.1064
| Unknown | ATSWI3A (SWITCH/SUCROSE NONFERMENTING 3A) DNA BINDING |
AT3G12860 | Predictedinterologs mapping | FSW = 0.0078
| Unknown | NUCLEOLAR PROTEIN NOP56 PUTATIVE |
AT1G56110 | Predictedinterologs mapping | FSW = 0.0271
| Unknown | NOP56 (ARABIDOPSIS HOMOLOG OF NUCLEOLAR PROTEIN NOP56) |
AT4G20400 | PredictedPhenotypic Enhancement | FSW = 0.0064
| Unknown | TRANSCRIPTION FACTOR JUMONJI (JMJ) FAMILY PROTEIN / ZINC FINGER (C5HC2 TYPE) FAMILY PROTEIN |
AT4G25340 | PredictedCo-purification | FSW = 0.0661
| Unknown | IMMUNOPHILIN-RELATED / FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED |
AT4G22380 | Predictedtwo hybridtwo hybrid | FSW = 0.0096
| Unknown | RIBOSOMAL PROTEIN L7AE/L30E/S12E/GADD45 FAMILY PROTEIN |
AT5G01630 | Predictedin vitrotwo hybrid | FSW = 0.0103
| Unknown | BRCA2B (BRCA2-LIKE B) PROTEIN BINDING / SINGLE-STRANDED DNA BINDING |
AT3G18480 | PredictedAffinity Capture-WesternCo-purification | FSW = 0.0885
| Unknown | ATCASP (ARABIDOPSIS THALIANA CCAAT-DISPLACEMENT PROTEIN ALTERNATIVELY SPLICED PRODUCT) |
AT5G62500 | Predictedsynthetic growth defect | FSW = 0.0261
| Unknown | ATEB1B (END BINDING PROTEIN 1B) MICROTUBULE BINDING |
AT3G47690 | PredictedSynthetic LethalitySynthetic LethalitySynthetic LethalitySynthetic Lethality | FSW = 0.0995
| Unknown | ATEB1A MICROTUBULE BINDING |
AT1G52300 | Predictedtwo hybrid | FSW = 0.0201
| Unknown | 60S RIBOSOMAL PROTEIN L37 (RPL37B) |
AT3G60360 | Predictedsynthetic growth defect | FSW = 0.0542
| Unknown | EDA14 (EMBRYO SAC DEVELOPMENT ARREST 14) |
AT2G31270 | PredictedPhenotypic Suppression | FSW = 0.0145
| Unknown | CDT1A (ARABIDOPSIS HOMOLOG OF YEAST CDT1 A) CYCLIN-DEPENDENT PROTEIN KINASE/ PROTEIN BINDING |
AT5G10330 | PredictedSynthetic Lethality | FSW = 0.0105
| Unknown | HPA1 (HISTIDINOL PHOSPHATE AMINOTRANSFERASE 1) HISTIDINOL-PHOSPHATE TRANSAMINASE |
AT4G16420 | PredictedAffinity Capture-MSAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MS | FSW = 0.0685
| Unknown | ADA2B (HOMOLOG OF YEAST ADA2 2B) DNA BINDING / TRANSCRIPTION COACTIVATOR/ TRANSCRIPTION FACTOR |
AT2G36200 | PredictedSynthetic LethalitySynthetic LethalitySynthetic Lethalityinteraction prediction | FSW = 0.1559
| Unknown | KINESIN MOTOR PROTEIN-RELATED |
AT2G29540 | Predictedinterologs mapping | FSW = 0.0603
| Unknown | ATRPC14 (RNA POLYMERASE 14 KDA SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION |
AT2G41240 | Predictedtwo hybridtwo hybrid | FSW = 0.0100
| Unknown | BHLH100 (BASIC HELIX-LOOP-HELIX PROTEIN 100) DNA BINDING / TRANSCRIPTION FACTOR |
AT3G54710 | PredictedPhenotypic Suppression | FSW = 0.0108
| Unknown | CDT1B (ARABIDOPSIS HOMOLOG OF YEAST CDT1 BARABIDOPSIS HOMOLOG OF YEAST CDT1 B) CYCLIN-DEPENDENT PROTEIN KINASE |
AT5G06150 | Predictedtwo hybridtwo hybrid | FSW = 0.0080
| Unknown | CYC1BAT CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT1G49910 | Predictedin vivoin vitroAffinity Capture-MS | FSW = 0.0523
| Unknown | WD-40 REPEAT FAMILY PROTEIN / MITOTIC CHECKPOINT PROTEIN PUTATIVE |
AT2G20000 | Predictedin vivoAffinity Capture-MS | FSW = 0.0424
| Unknown | HBT (HOBBIT) BINDING |
AT4G33270 | Predictedtwo hybridtwo hybridtwo hybridin vitroin vitroin vitroin vivoin vivoin vivoin vivoin vitrotwo hybridAffinity Capture-Western | FSW = 0.0841
| Unknown | CDC201 SIGNAL TRANSDUCER |
AT5G11490 | PredictedAffinity Capture-MS | FSW = 0.0101
| Unknown | ADAPTIN FAMILY PROTEIN |
AT1G02100 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1233
| Unknown | LEUCINE CARBOXYL METHYLTRANSFERASE FAMILY PROTEIN |
AT1G04730 | PredictedSynthetic LethalitySynthetic Lethalitysynthetic growth defectPhenotypic Enhancementinteraction prediction | FSW = 0.0817
| Unknown | AAA-TYPE ATPASE FAMILY PROTEIN |
AT1G13580 | PredictedSynthetic LethalityPhenotypic EnhancementAffinity Capture-MS | FSW = 0.1106
| Unknown | LAG13 (LAG1 LONGEVITY ASSURANCE HOMOLOG 3) |
AT1G08780 | PredictedSynthetic LethalityPhenotypic Enhancementinteraction prediction | FSW = 0.0963
| Unknown | AIP3 (ABI3-INTERACTING PROTEIN 3) UNFOLDED PROTEIN BINDING |
AT1G29990 | PredictedSynthetic LethalityPhenotypic Enhancementinteraction prediction | FSW = 0.0906
| Unknown | PDF6 (PREFOLDIN 6) UNFOLDED PROTEIN BINDING |
AT1G47830 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0480
| Unknown | CLATHRIN COAT ASSEMBLY PROTEIN PUTATIVE |
AT1G54560 | Predictedbiochemical | FSW = 0.0079
| Unknown | XIE MOTOR/ PROTEIN BINDING |
AT1G79890 | PredictedSynthetic LethalityPhenotypic Enhancementinteraction prediction | FSW = 0.1733
| Unknown | HELICASE-RELATED |
AT2G22040 | PredictedAffinity Capture-MS | FSW = 0.0231
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT2G34750 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.1544
| Unknown | RNA POLYMERASE I SPECIFIC TRANSCRIPTION INITIATION FACTOR RRN3 FAMILY PROTEIN |
AT2G34890 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2244
| Unknown | CTP SYNTHASE PUTATIVE / UTP--AMMONIA LIGASE PUTATIVE |
AT2G44580 | PredictedSynthetic Lethalitysynthetic growth defectinteraction prediction | FSW = 0.1136
| Unknown | PROTEIN BINDING / ZINC ION BINDING |
AT3G09640 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternCo-purificationco-fractionationCo-fractionationCo-crystal Structure | FSW = 0.1822
| Unknown | APX2 (ASCORBATE PEROXIDASE 2) L-ASCORBATE PEROXIDASE |
AT3G12670 | Predictedinterologs mapping | FSW = 0.0505
| Unknown | EMB2742 (EMBRYO DEFECTIVE 2742) CTP SYNTHASE/ CATALYTIC |
AT3G22480 | PredictedSynthetic Lethalitysynthetic growth defectPhenotypic Enhancementinteraction prediction | FSW = 0.1189
| Unknown | PREFOLDIN-RELATED KE2 FAMILY PROTEIN |
AT3G24010 | PredictedSynthetic Lethality | FSW = 0.0382
| Unknown | ING1 (INHIBITOR OF GROWTH 1) DNA BINDING / METHYLATED HISTONE RESIDUE BINDING |
AT3G42660 | PredictedSynthetic Lethalityinteraction prediction | FSW = 0.0712
| Unknown | NUCLEOTIDE BINDING |
AT3G62760 | PredictedPhenotypic SuppressionSynthetic Lethalitysynthetic growth defect | FSW = 0.1426
| Unknown | ATGSTF13 GLUTATHIONE TRANSFERASE |
AT4G13020 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0279
| Unknown | MHK ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT4G14670 | PredictedAffinity Capture-MS | FSW = 0.0604
| Unknown | CLPB2 ATP BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT4G19560 | PredictedAffinity Capture-MS | FSW = 0.0177
| Unknown | CYCT12 CYCLIN-DEPENDENT PROTEIN KINASE |
AT4G23895 | PredictedAffinity Capture-MS | FSW = 0.0277
| Unknown | PLECKSTRIN HOMOLOGY (PH) DOMAIN-CONTAINING PROTEIN-RELATED |
AT4G27180 | PredictedSynthetic LethalitySynthetic LethalitySynthetic LethalityPhenotypic Enhancement | FSW = 0.1524
| Unknown | ATK2 (ARABIDOPSIS THALIANA KINESIN 2) MICROTUBULE BINDING / MICROTUBULE MOTOR |
AT5G14180 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1686
| Unknown | MPL1 (MYZUS PERSICAE-INDUCED LIPASE 1) CATALYTIC |
AT5G19510 | PredictedAffinity Capture-MS | FSW = 0.0149
| Unknown | ELONGATION FACTOR 1B ALPHA-SUBUNIT 2 (EEF1BALPHA2) |
AT5G23290 | PredictedSynthetic LethalityPhenotypic Enhancementinteraction prediction | FSW = 0.0956
| Unknown | PDF5 (PREFOLDIN 5) UNFOLDED PROTEIN BINDING |
AT5G27970 | PredictedAffinity Capture-MS | FSW = 0.0495
| Unknown | BINDING |
AT5G49510 | PredictedSynthetic Lethalityinteraction prediction | FSW = 0.0801
| Unknown | PDF3 (PREFOLDIN 3) UNFOLDED PROTEIN BINDING |
AT3G54380 | PredictedPhenotypic Enhancement | FSW = 0.0494
| Unknown | SAC3/GANP FAMILY PROTEIN |
AT5G20560 | PredictedAffinity Capture-MS | FSW = 0.0935
| Unknown | BETA-13-GLUCANASE PUTATIVE |
AT4G21530 | PredictedAffinity Capture-MS | FSW = 0.0629
| Unknown | NUCLEOTIDE BINDING |
AT3G55480 | PredictedAffinity Capture-MS | FSW = 0.0067
| Unknown | ADAPTIN FAMILY PROTEIN |
AT3G16320 | PredictedAffinity Capture-MSin vivo | FSW = 0.0495
| Unknown | CDC27A BINDING |
AT4G33260 | Predictedtwo hybridtwo hybridtwo hybridin vivoin vivoin vivoin vitroin vitroin vitroin vitroin vivotwo hybrid | FSW = 0.0462
| Unknown | CDC202 SIGNAL TRANSDUCER |
AT4G08470 | Predictedin vitro | FSW = 0.0100
| Unknown | MAPKKK10 ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT1G78770 | Predictedin vivo | FSW = 0.0870
| Unknown | CELL DIVISION CYCLE FAMILY PROTEIN |
AT5G54670 | Predictedinteraction prediction | FSW = 0.1400
| Unknown | ATK3 (ARABIDOPSIS THALIANA KINESIN 3) ATPASE/ MICROTUBULE BINDING / MICROTUBULE MOTOR |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454