Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G12670 - ( emb2742 (embryo defective 2742) CTP synthase/ catalytic )

50 Proteins interacs with AT3G12670
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT4G14960

Predicted

Affinity Capture-MS

FSW = 0.0179

Unknown

TUA6 STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT4G31700

Predicted

Affinity Capture-MS

FSW = 0.0283

Unknown

RPS6 (RIBOSOMAL PROTEIN S6) STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G09630

Predicted

Affinity Capture-MS

FSW = 0.0569

Unknown

60S RIBOSOMAL PROTEIN L4/L1 (RPL4A)
AT4G16660

Predicted

Synthetic Rescue

FSW = 0.0643

Unknown

HEAT SHOCK PROTEIN 70 PUTATIVE / HSP70 PUTATIVE
AT1G56070

Predicted

Affinity Capture-MS

FSW = 0.0579

Unknown

LOS1 COPPER ION BINDING / TRANSLATION ELONGATION FACTOR/ TRANSLATION FACTOR NUCLEIC ACID BINDING
AT2G37270

Predicted

Affinity Capture-MS

FSW = 0.0443

Unknown

ATRPS5B (RIBOSOMAL PROTEIN 5B) STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G54270

Predicted

interaction prediction

FSW = 0.0186

Unknown

EIF4A-2 ATP-DEPENDENT HELICASE/ TRANSLATION INITIATION FACTOR
AT5G22440

Predicted

Affinity Capture-MS

FSW = 0.0278

Unknown

60S RIBOSOMAL PROTEIN L10A (RPL10AC)
AT5G58060

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0155

Unknown

YKT61
AT3G52140Predicted

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.0704

Unknown

TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN
AT5G14780

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0373

Unknown

FDH (FORMATE DEHYDROGENASE) NAD OR NADH BINDING / BINDING / CATALYTIC/ COFACTOR BINDING / OXIDOREDUCTASE ACTING ON THE CH-OH GROUP OF DONORS NAD OR NADP AS ACCEPTOR
AT3G11510

Predicted

Affinity Capture-MS

FSW = 0.0398

Unknown

40S RIBOSOMAL PROTEIN S14 (RPS14B)
AT5G19690

Predicted

Affinity Capture-MS

FSW = 0.0203

Unknown

STT3A (STAUROSPORIN AND TEMPERATURE SENSITIVE 3-LIKE A) OLIGOSACCHARYL TRANSFERASE
AT5G26340

Predicted

Affinity Capture-MS

FSW = 0.0497

Unknown

MSS1 CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ HEXOSEHYDROGEN SYMPORTER/ HIGH-AFFINITY HYDROGENGLUCOSE SYMPORTER/ SUGARHYDROGEN SYMPORTER
AT2G20580

Predicted

Affinity Capture-MS

FSW = 0.0981

Unknown

RPN1A (26S PROTEASOME REGULATORY SUBUNIT S2 1A) BINDING / ENZYME REGULATOR
AT3G16780

Predicted

Affinity Capture-MS

FSW = 0.0370

Unknown

60S RIBOSOMAL PROTEIN L19 (RPL19B)
AT5G19990

Predicted

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.0743

Unknown

RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A) ATPASE
AT3G05530

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0964

Unknown

RPT5A (REGULATORY PARTICLE TRIPLE-A ATPASE 5A) ATPASE/ CALMODULIN BINDING
AT3G54610

Predicted

Affinity Capture-MS

FSW = 0.0230

Unknown

GCN5 DNA BINDING / H3 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE
AT2G47620

Predicted

Synthetic Rescue

FSW = 0.0325

Unknown

ATSWI3A (SWITCH/SUCROSE NONFERMENTING 3A) DNA BINDING
AT3G13920

Predicted

Affinity Capture-MS

FSW = 0.0137

Unknown

EIF4A1 (EUKARYOTIC TRANSLATION INITIATION FACTOR 4A1) ATP-DEPENDENT HELICASE/ TRANSLATION INITIATION FACTOR
AT1G28460

Predicted

Synthetic Rescue

FSW = 0.0259

Unknown

AGL59 (AGAMOUS-LIKE 59) DNA BINDING / TRANSCRIPTION FACTOR
AT1G79750

Predicted

Affinity Capture-MS

FSW = 0.1219

Unknown

ATNADP-ME4 (NADP-MALIC ENZYME 4) MALATE DEHYDROGENASE (OXALOACETATE-DECARBOXYLATING) (NADP+)/ MALIC ENZYME/ OXIDOREDUCTASE ACTING ON NADH OR NADPH NAD OR NADP AS ACCEPTOR
AT3G25980

Predicted

Affinity Capture-MS

FSW = 0.0045

Unknown

MITOTIC SPINDLE CHECKPOINT PROTEIN PUTATIVE (MAD2)
AT4G26840

Predicted

Affinity Capture-MS

FSW = 0.0400

Unknown

SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1) PROTEIN BINDING / PROTEIN TAG
AT4G21710

Predicted

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.0290

Unknown

NRPB2 DNA BINDING / DNA-DIRECTED RNA POLYMERASE
AT5G58290

Predicted

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.1063

Unknown

RPT3 (REGULATORY PARTICLE TRIPLE-A ATPASE 3) ATPASE
AT2G29540

Predicted

Synthetic Rescue

FSW = 0.0241

Unknown

ATRPC14 (RNA POLYMERASE 14 KDA SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION
AT1G66740

Predicted

Synthetic Rescue

FSW = 0.0186

Unknown

SGA2
AT2G32730

Predicted

Affinity Capture-MS

FSW = 0.1239

Unknown

26S PROTEASOME REGULATORY SUBUNIT PUTATIVE
AT2G33560

Predicted

interologs mapping

FSW = 0.0505

Unknown

SPINDLE CHECKPOINT PROTEIN-RELATED
AT2G35390

Predicted

interologs mapping

FSW = 0.0149

Unknown

RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 1 / PHOSPHORIBOSYL DIPHOSPHATE SYNTHETASE 1 (PRSI)
AT2G39770

Predicted

Affinity Capture-MS

FSW = 0.1016

Unknown

CYT1 (CYTOKINESIS DEFECTIVE 1) MANNOSE-1-PHOSPHATE GUANYLYLTRANSFERASE/ NUCLEOTIDYLTRANSFERASE
AT2G44820

Predicted

interologs mapping

FSW = 0.0722

Unknown

UNKNOWN PROTEIN
AT3G11270

Predicted

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.0950

Unknown

MEE34 (MATERNAL EFFECT EMBRYO ARREST 34)
AT3G49420Predicted

Synthetic Lethality

Synthetic Lethality

FSW = 0.0714

Unknown

GOT1-LIKE FAMILY PROTEIN
AT4G04700

Predicted

Affinity Capture-Western

interologs mapping

Synthetic Lethality

FSW = 0.0212

Unknown

CPK27 ATP BINDING / CALCIUM ION BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE
AT5G26110

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0415

Unknown

ATP BINDING / CATALYTIC/ PROTEIN KINASE
AT5G65010

Predicted

Affinity Capture-MS

FSW = 0.0385

Unknown

ASN2 (ASPARAGINE SYNTHETASE 2) ASPARAGINE SYNTHASE (GLUTAMINE-HYDROLYZING)
AT3G55170

Predicted

Affinity Capture-MS

FSW = 0.0317

Unknown

60S RIBOSOMAL PROTEIN L35 (RPL35C)
AT4G20870

Predicted

Synthetic Rescue

FSW = 0.0871

Unknown

FAH2 (FATTY ACID HYDROXYLASE 2) CATALYTIC/ FATTY ACID ALPHA-HYDROXYLASE
AT4G38250

Predicted

Synthetic Rescue

FSW = 0.0377

Unknown

AMINO ACID TRANSPORTER FAMILY PROTEIN
AT4G38630

Predicted

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.0773

Unknown

RPN10 (REGULATORY PARTICLE NON-ATPASE 10) PEPTIDE RECEPTOR
AT5G23540

Predicted

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.0937

Unknown

26S PROTEASOME REGULATORY SUBUNIT PUTATIVE
AT5G42600

Predicted

Synthetic Rescue

FSW = 0.0842

Unknown

MRN1 (MARNERAL SYNTHASE) CATALYTIC/ MARNERAL SYNTHASE
AT2G34890

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.0786

Unknown

CTP SYNTHASE PUTATIVE / UTP--AMMONIA LIGASE PUTATIVE
AT4G20320

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.0992

Unknown

CTP SYNTHASE/ CATALYTIC
AT1G30820

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.5004

Unknown

CTP SYNTHASE PUTATIVE / UTP--AMMONIA LIGASE PUTATIVE
AT4G02120

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.1252

Unknown

CTP SYNTHASE PUTATIVE / UTP--AMMONIA LIGASE PUTATIVE
AT5G14230

Predicted

Gene fusion method

FSW = 0.0189

Unknown

PROTEIN BINDING

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454