Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G12670 - ( emb2742 (embryo defective 2742) CTP synthase/ catalytic )
50 Proteins interacs with AT3G12670Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT4G14960 | PredictedAffinity Capture-MS | FSW = 0.0179
| Unknown | TUA6 STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT4G31700 | PredictedAffinity Capture-MS | FSW = 0.0283
| Unknown | RPS6 (RIBOSOMAL PROTEIN S6) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT3G09630 | PredictedAffinity Capture-MS | FSW = 0.0569
| Unknown | 60S RIBOSOMAL PROTEIN L4/L1 (RPL4A) |
AT4G16660 | PredictedSynthetic Rescue | FSW = 0.0643
| Unknown | HEAT SHOCK PROTEIN 70 PUTATIVE / HSP70 PUTATIVE |
AT1G56070 | PredictedAffinity Capture-MS | FSW = 0.0579
| Unknown | LOS1 COPPER ION BINDING / TRANSLATION ELONGATION FACTOR/ TRANSLATION FACTOR NUCLEIC ACID BINDING |
AT2G37270 | PredictedAffinity Capture-MS | FSW = 0.0443
| Unknown | ATRPS5B (RIBOSOMAL PROTEIN 5B) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G54270 | Predictedinteraction prediction | FSW = 0.0186
| Unknown | EIF4A-2 ATP-DEPENDENT HELICASE/ TRANSLATION INITIATION FACTOR |
AT5G22440 | PredictedAffinity Capture-MS | FSW = 0.0278
| Unknown | 60S RIBOSOMAL PROTEIN L10A (RPL10AC) |
AT5G58060 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0155
| Unknown | YKT61 |
AT3G52140 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0704
| Unknown | TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN |
AT5G14780 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0373
| Unknown | FDH (FORMATE DEHYDROGENASE) NAD OR NADH BINDING / BINDING / CATALYTIC/ COFACTOR BINDING / OXIDOREDUCTASE ACTING ON THE CH-OH GROUP OF DONORS NAD OR NADP AS ACCEPTOR |
AT3G11510 | PredictedAffinity Capture-MS | FSW = 0.0398
| Unknown | 40S RIBOSOMAL PROTEIN S14 (RPS14B) |
AT5G19690 | PredictedAffinity Capture-MS | FSW = 0.0203
| Unknown | STT3A (STAUROSPORIN AND TEMPERATURE SENSITIVE 3-LIKE A) OLIGOSACCHARYL TRANSFERASE |
AT5G26340 | PredictedAffinity Capture-MS | FSW = 0.0497
| Unknown | MSS1 CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ HEXOSEHYDROGEN SYMPORTER/ HIGH-AFFINITY HYDROGENGLUCOSE SYMPORTER/ SUGARHYDROGEN SYMPORTER |
AT2G20580 | PredictedAffinity Capture-MS | FSW = 0.0981
| Unknown | RPN1A (26S PROTEASOME REGULATORY SUBUNIT S2 1A) BINDING / ENZYME REGULATOR |
AT3G16780 | PredictedAffinity Capture-MS | FSW = 0.0370
| Unknown | 60S RIBOSOMAL PROTEIN L19 (RPL19B) |
AT5G19990 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0743
| Unknown | RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A) ATPASE |
AT3G05530 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0964
| Unknown | RPT5A (REGULATORY PARTICLE TRIPLE-A ATPASE 5A) ATPASE/ CALMODULIN BINDING |
AT3G54610 | PredictedAffinity Capture-MS | FSW = 0.0230
| Unknown | GCN5 DNA BINDING / H3 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE |
AT2G47620 | PredictedSynthetic Rescue | FSW = 0.0325
| Unknown | ATSWI3A (SWITCH/SUCROSE NONFERMENTING 3A) DNA BINDING |
AT3G13920 | PredictedAffinity Capture-MS | FSW = 0.0137
| Unknown | EIF4A1 (EUKARYOTIC TRANSLATION INITIATION FACTOR 4A1) ATP-DEPENDENT HELICASE/ TRANSLATION INITIATION FACTOR |
AT1G28460 | PredictedSynthetic Rescue | FSW = 0.0259
| Unknown | AGL59 (AGAMOUS-LIKE 59) DNA BINDING / TRANSCRIPTION FACTOR |
AT1G79750 | PredictedAffinity Capture-MS | FSW = 0.1219
| Unknown | ATNADP-ME4 (NADP-MALIC ENZYME 4) MALATE DEHYDROGENASE (OXALOACETATE-DECARBOXYLATING) (NADP+)/ MALIC ENZYME/ OXIDOREDUCTASE ACTING ON NADH OR NADPH NAD OR NADP AS ACCEPTOR |
AT3G25980 | PredictedAffinity Capture-MS | FSW = 0.0045
| Unknown | MITOTIC SPINDLE CHECKPOINT PROTEIN PUTATIVE (MAD2) |
AT4G26840 | PredictedAffinity Capture-MS | FSW = 0.0400
| Unknown | SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1) PROTEIN BINDING / PROTEIN TAG |
AT4G21710 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0290
| Unknown | NRPB2 DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT5G58290 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.1063
| Unknown | RPT3 (REGULATORY PARTICLE TRIPLE-A ATPASE 3) ATPASE |
AT2G29540 | PredictedSynthetic Rescue | FSW = 0.0241
| Unknown | ATRPC14 (RNA POLYMERASE 14 KDA SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION |
AT1G66740 | PredictedSynthetic Rescue | FSW = 0.0186
| Unknown | SGA2 |
AT2G32730 | PredictedAffinity Capture-MS | FSW = 0.1239
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE |
AT2G33560 | Predictedinterologs mapping | FSW = 0.0505
| Unknown | SPINDLE CHECKPOINT PROTEIN-RELATED |
AT2G35390 | Predictedinterologs mapping | FSW = 0.0149
| Unknown | RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 1 / PHOSPHORIBOSYL DIPHOSPHATE SYNTHETASE 1 (PRSI) |
AT2G39770 | PredictedAffinity Capture-MS | FSW = 0.1016
| Unknown | CYT1 (CYTOKINESIS DEFECTIVE 1) MANNOSE-1-PHOSPHATE GUANYLYLTRANSFERASE/ NUCLEOTIDYLTRANSFERASE |
AT2G44820 | Predictedinterologs mapping | FSW = 0.0722
| Unknown | UNKNOWN PROTEIN |
AT3G11270 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0950
| Unknown | MEE34 (MATERNAL EFFECT EMBRYO ARREST 34) |
AT3G49420 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0714
| Unknown | GOT1-LIKE FAMILY PROTEIN |
AT4G04700 | PredictedAffinity Capture-Westerninterologs mappingSynthetic Lethality | FSW = 0.0212
| Unknown | CPK27 ATP BINDING / CALCIUM ION BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT5G26110 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0415
| Unknown | ATP BINDING / CATALYTIC/ PROTEIN KINASE |
AT5G65010 | PredictedAffinity Capture-MS | FSW = 0.0385
| Unknown | ASN2 (ASPARAGINE SYNTHETASE 2) ASPARAGINE SYNTHASE (GLUTAMINE-HYDROLYZING) |
AT3G55170 | PredictedAffinity Capture-MS | FSW = 0.0317
| Unknown | 60S RIBOSOMAL PROTEIN L35 (RPL35C) |
AT4G20870 | PredictedSynthetic Rescue | FSW = 0.0871
| Unknown | FAH2 (FATTY ACID HYDROXYLASE 2) CATALYTIC/ FATTY ACID ALPHA-HYDROXYLASE |
AT4G38250 | PredictedSynthetic Rescue | FSW = 0.0377
| Unknown | AMINO ACID TRANSPORTER FAMILY PROTEIN |
AT4G38630 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0773
| Unknown | RPN10 (REGULATORY PARTICLE NON-ATPASE 10) PEPTIDE RECEPTOR |
AT5G23540 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0937
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE |
AT5G42600 | PredictedSynthetic Rescue | FSW = 0.0842
| Unknown | MRN1 (MARNERAL SYNTHASE) CATALYTIC/ MARNERAL SYNTHASE |
AT2G34890 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0786
| Unknown | CTP SYNTHASE PUTATIVE / UTP--AMMONIA LIGASE PUTATIVE |
AT4G20320 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0992
| Unknown | CTP SYNTHASE/ CATALYTIC |
AT1G30820 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.5004
| Unknown | CTP SYNTHASE PUTATIVE / UTP--AMMONIA LIGASE PUTATIVE |
AT4G02120 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1252
| Unknown | CTP SYNTHASE PUTATIVE / UTP--AMMONIA LIGASE PUTATIVE |
AT5G14230 | PredictedGene fusion method | FSW = 0.0189
| Unknown | PROTEIN BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454