Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G02120 - ( CTP synthase putative / UTP--ammonia ligase putative )
19 Proteins interacs with AT4G02120Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G09630 | PredictedAffinity Capture-MS | FSW = 0.0354
| Unknown | 60S RIBOSOMAL PROTEIN L4/L1 (RPL4A) |
AT2G37270 | Predictedinterologs mappingReconstituted Complex | FSW = 0.1200
| Unknown | ATRPS5B (RIBOSOMAL PROTEIN 5B) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT3G30390 | PredictedPhenotypic Enhancement | FSW = 0.0602
| Unknown | AMINO ACID TRANSPORTER FAMILY PROTEIN |
AT1G65240 | PredictedSynthetic Lethality | FSW = 0.0460
| Unknown | ASPARTYL PROTEASE FAMILY PROTEIN |
AT1G75170 | PredictedAffinity Capture-MSAffinity Capture-MStwo hybridtwo hybridAffinity Capture-MSinterologs mappingAffinity Capture-Western | FSW = 0.1154
| Unknown | SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLYCERIDE TRANSFER FAMILY PROTEIN |
AT5G03540 | Predictedinterologs mappinginterologs mapping | FSW = 0.2865
| Unknown | ATEXO70A1 (EXOCYST SUBUNIT EXO70 FAMILY PROTEIN A1) PROTEIN BINDING |
AT2G39480 | PredictedAffinity Capture-Western | FSW = 0.1068
| Unknown | PGP6 (P-GLYCOPROTEIN 6) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
AT2G34450 | PredictedAffinity Capture-MSAffinity Capture-MSSynthetic LethalityAffinity Capture-MSAffinity Capture-Western | FSW = 0.1470
| Unknown | HIGH MOBILITY GROUP (HMG1/2) FAMILY PROTEIN |
AT3G13445 | PredictedAffinity Capture-Westerninterologs mapping | FSW = 0.0709
| Unknown | TBP1 (TATA BINDING PROTEIN 1) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ BINDING |
AT3G21540 | PredictedAffinity Capture-Westerninterologs mapping | FSW = 0.1068
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT1G01020 | PredictedAffinity Capture-WesternReconstituted ComplexSynthetic Lethality | FSW = 0.1587
| Unknown | ARV1 |
AT1G34340 | PredictedSynthetic Lethality | FSW = 0.1236
| Unknown | ESTERASE/LIPASE/THIOESTERASE FAMILY PROTEIN |
AT3G12490 | PredictedAffinity Capture-Western | FSW = 0.1688
| Unknown | CYSTEINE PROTEASE INHIBITOR PUTATIVE / CYSTATIN PUTATIVE |
AT5G66640 | Predictedbiochemical | FSW = 0.0165
| Unknown | DAR3 (DA1-RELATED PROTEIN 3) |
AT5G09630 | Predictedinterologs mapping | FSW = 0.0087
| Unknown | PROTEIN BINDING / ZINC ION BINDING |
AT2G34890 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0976
| Unknown | CTP SYNTHASE PUTATIVE / UTP--AMMONIA LIGASE PUTATIVE |
AT4G20320 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.2222
| Unknown | CTP SYNTHASE/ CATALYTIC |
AT1G30820 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1910
| Unknown | CTP SYNTHASE PUTATIVE / UTP--AMMONIA LIGASE PUTATIVE |
AT3G12670 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1252
| Unknown | EMB2742 (EMBRYO DEFECTIVE 2742) CTP SYNTHASE/ CATALYTIC |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454