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AT3G09630 - ( 60S ribosomal protein L4/L1 (RPL4A) )

197 Proteins interacs with AT3G09630

Locus	Method	FSW	Cellular Compartment Classification (C3)	Description
AT3G49910	Predicted Affinity Capture-MS	FSW = 0.2240	Class C: vacuole plastid plasma membrane nucleus	60S RIBOSOMAL PROTEIN L26 (RPL26A)
AT2G18020	Predicted Affinity Capture-MS	FSW = 0.3503	Class C: vacuole plastid plasma membrane nucleus	EMB2296 (EMBRYO DEFECTIVE 2296) STRUCTURAL CONSTITUENT OF RIBOSOME
AT4G31700	Predicted Affinity Capture-MS	FSW = 0.2357	Class C: vacuole plastid plasma membrane nucleus	RPS6 (RIBOSOMAL PROTEIN S6) STRUCTURAL CONSTITUENT OF RIBOSOME
AT5G02870	Predicted Phylogenetic profile method Co-expression	FSW = 0.0299	Class C: vacuole plastid plasma membrane nucleus	60S RIBOSOMAL PROTEIN L4/L1 (RPL4D)
AT2G42740	Predicted Affinity Capture-MS	FSW = 0.3391	Class C: vacuole plastid plasma membrane nucleus	RPL16A STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G09200	Predicted Affinity Capture-MS	FSW = 0.2882	Class C: vacuole plastid plasma membrane nucleus	60S ACIDIC RIBOSOMAL PROTEIN P0 (RPP0B)
AT2G17360	Predicted Affinity Capture-MS	FSW = 0.2285	Class C: vacuole plastid plasma membrane	40S RIBOSOMAL PROTEIN S4 (RPS4A)
AT5G15200	Predicted Affinity Capture-MS	FSW = 0.2426	Class C: vacuole plastid nucleus	40S RIBOSOMAL PROTEIN S9 (RPS9B)
AT2G47610	Predicted Affinity Capture-MS	FSW = 0.3672	Class C: vacuole plastid nucleus	60S RIBOSOMAL PROTEIN L7A (RPL7AA)
AT5G67500	Predicted Affinity Capture-MS	FSW = 0.0442	Class C: vacuole plastid	VDAC2 (VOLTAGE DEPENDENT ANION CHANNEL 2) VOLTAGE-GATED ANION CHANNEL
AT1G33140	Predicted Affinity Capture-MS	FSW = 0.2557	Class C: vacuole plastid	PGY2 (PIGGYBACK2) STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G04920	Predicted Affinity Capture-MS	FSW = 0.3360	Class C: vacuole plasma membrane nucleus	40S RIBOSOMAL PROTEIN S24 (RPS24A)
AT3G49010	Predicted Affinity Capture-MS	FSW = 0.3173	Class C: vacuole plasma membrane nucleus	ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1) STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G67430	Predicted Affinity Capture-MS	FSW = 0.3434	Class C: vacuole plasma membrane nucleus	60S RIBOSOMAL PROTEIN L17 (RPL17B)
AT4G19640	Predicted Synthetic Lethality Synthetic Lethality	FSW = 0.0137	Class C: vacuole plasma membrane	ARA7 GTP BINDING
AT1G07810	Predicted Phenotypic Suppression	FSW = 0.0168	Class C: vacuole plasma membrane	ECA1 (ER-TYPE CA2+-ATPASE 1) CALCIUM-TRANSPORTING ATPASE
AT2G37270	Predicted Affinity Capture-MS	FSW = 0.2888	Class C: vacuole plasma membrane	ATRPS5B (RIBOSOMAL PROTEIN 5B) STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G07770	Predicted Affinity Capture-MS	FSW = 0.2697	Class C: vacuole plasma membrane	RPS15A (RIBOSOMAL PROTEIN S15A) STRUCTURAL CONSTITUENT OF RIBOSOME
AT2G34480	Predicted Affinity Capture-MS	FSW = 0.2370	Class C: vacuole plasma membrane	60S RIBOSOMAL PROTEIN L18A (RPL18AB)
AT3G22630	Predicted Affinity Capture-MS	FSW = 0.0137	Class C: vacuole plasma membrane	PBD1 (20S PROTEASOME BETA SUBUNIT D1) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT5G27850	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.1735	Class C: vacuole plasma membrane	60S RIBOSOMAL PROTEIN L18 (RPL18C)
AT5G05520	Predicted Affinity Capture-MS	FSW = 0.0112	Class C: vacuole	OUTER MEMBRANE OMP85 FAMILY PROTEIN
AT2G45170	Predicted Phenotypic Enhancement	FSW = 0.0217	Class C: vacuole	ATATG8E MICROTUBULE BINDING
AT1G66580	Predicted Affinity Capture-MS	FSW = 0.3596	Class C: vacuole	60S RIBOSOMAL PROTEIN L10 (RPL10C)
AT3G22110	Predicted Phenotypic Suppression	FSW = 0.0460	Class C: vacuole	PAC1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT3G62870	Predicted Affinity Capture-MS	FSW = 0.0476	Class C: vacuole	60S RIBOSOMAL PROTEIN L7A (RPL7AB)
AT4G14800	Predicted Affinity Capture-MS	FSW = 0.0134	Class C: vacuole	PBD2 (20S PROTEASOME BETA SUBUNIT 2) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT3G26590	Predicted biochemical	FSW = 0.0138	Class C: vacuole	MATE EFFLUX FAMILY PROTEIN
AT1G72370	Predicted Affinity Capture-MS Co-expression	FSW = 0.0627	Class C: plastid plasma membrane nucleus	P40 STRUCTURAL CONSTITUENT OF RIBOSOME
AT5G20290	Predicted Affinity Capture-MS	FSW = 0.2529	Class C: plastid plasma membrane nucleus	40S RIBOSOMAL PROTEIN S8 (RPS8A)
AT1G48830	Predicted Affinity Capture-MS	FSW = 0.2382	Class C: plastid plasma membrane	40S RIBOSOMAL PROTEIN S7 (RPS7A)
AT2G09990	Predicted Affinity Capture-MS	FSW = 0.2997	Class C: plastid plasma membrane	40S RIBOSOMAL PROTEIN S16 (RPS16A)
AT1G55920	Predicted Phenotypic Enhancement	FSW = 0.0252	Class C: plastid nucleus	ATSERAT21 (SERINE ACETYLTRANSFERASE 21) SERINE O-ACETYLTRANSFERASE
AT1G11870	Predicted Affinity Capture-Western Phenotypic Enhancement	FSW = 0.0326	Class C: plastid	SRS (SERYL-TRNA SYNTHETASE) SERINE-TRNA LIGASE
AT5G51820	Predicted Phenotypic Enhancement	FSW = 0.0714	Class C: plastid	PGM (PHOSPHOGLUCOMUTASE) PHOSPHOGLUCOMUTASE
AT3G13580	Predicted Affinity Capture-MS	FSW = 0.4322	Class C: plastid	60S RIBOSOMAL PROTEIN L7 (RPL7D)
AT3G06530	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.1088	Class C: plastid	BINDING
AT3G04770	Predicted Affinity Capture-MS	FSW = 0.0616	Class C: plastid	RPSAB (40S RIBOSOMAL PROTEIN SA B) STRUCTURAL CONSTITUENT OF RIBOSOME
AT5G06290	Predicted biochemical	FSW = 0.0124	Class C: plastid	2-CYS PRX B (2-CYSTEINE PEROXIREDOXIN B) ANTIOXIDANT/ PEROXIREDOXIN
AT2G43030	Predicted Phenotypic Suppression	FSW = 0.0308	Class C: plastid	RIBOSOMAL PROTEIN L3 FAMILY PROTEIN
AT5G53480	Predicted Affinity Capture-MS	FSW = 0.0347	Class C: plastid	IMPORTIN BETA-2 PUTATIVE
AT3G11510	Predicted Affinity Capture-MS	FSW = 0.3328	Class C: plasma membrane nucleus	40S RIBOSOMAL PROTEIN S14 (RPS14B)
AT3G11964	Predicted Affinity Capture-MS	FSW = 0.2019	Class C: plasma membrane nucleus	RNA BINDING
AT2G37190	Predicted Affinity Capture-MS	FSW = 0.2689	Class C: plasma membrane nucleus	60S RIBOSOMAL PROTEIN L12 (RPL12A)
AT2G33370	Predicted Affinity Capture-MS	FSW = 0.0760	Class C: plasma membrane nucleus	60S RIBOSOMAL PROTEIN L23 (RPL23B)
AT2G27710	Predicted Affinity Capture-MS	FSW = 0.2497	Class C: plasma membrane nucleus	60S ACIDIC RIBOSOMAL PROTEIN P2 (RPP2B)
AT4G34670	Predicted Affinity Capture-MS	FSW = 0.2973	Class C: plasma membrane nucleus	40S RIBOSOMAL PROTEIN S3A (RPS3AB)
AT2G36880	Predicted two hybrid	FSW = 0.0051	Class C: plasma membrane nucleus	MAT3 (METHIONINE ADENOSYLTRANSFERASE 3) COPPER ION BINDING / METHIONINE ADENOSYLTRANSFERASE
AT3G17390	Predicted two hybrid	FSW = 0.0254	Class C: plasma membrane nucleus	MTO3 (METHIONINE OVER-ACCUMULATOR 3) METHIONINE ADENOSYLTRANSFERASE
AT1G27450	Predicted Affinity Capture-MS	FSW = 0.0418	Class C: plasma membrane	APT1 (ADENINE PHOSPHORIBOSYL TRANSFERASE 1) ADENINE PHOSPHORIBOSYLTRANSFERASE
AT2G37600	Predicted Affinity Capture-MS	FSW = 0.3458	Class C: plasma membrane	60S RIBOSOMAL PROTEIN L36 (RPL36A)
AT1G04750	Predicted Phenotypic Suppression	FSW = 0.0743	Class C: plasma membrane	VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721)
AT5G46430	Predicted Affinity Capture-MS	FSW = 0.2134	Class C: plasma membrane	60S RIBOSOMAL PROTEIN L32 (RPL32B)
AT1G70600	Predicted Affinity Capture-MS	FSW = 0.3982	Class C: plasma membrane	STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G76810	Predicted Affinity Capture-MS	FSW = 0.1456	Class C: plasma membrane	EUKARYOTIC TRANSLATION INITIATION FACTOR 2 FAMILY PROTEIN / EIF-2 FAMILY PROTEIN
AT4G02230	Predicted Affinity Capture-MS	FSW = 0.2453	Class C: plasma membrane	60S RIBOSOMAL PROTEIN L19 (RPL19C)
AT5G63880	Predicted two hybrid two hybrid	FSW = 0.0086	Class C: plasma membrane	VPS201
AT3G53870	Predicted biochemical Affinity Capture-MS	FSW = 0.2613	Class C: plasma membrane	40S RIBOSOMAL PROTEIN S3 (RPS3B)
AT4G15000	Predicted Phenotypic Suppression Affinity Capture-MS	FSW = 0.3555	Class C: plasma membrane	60S RIBOSOMAL PROTEIN L27 (RPL27C)
AT5G26340	Predicted Phenotypic Suppression	FSW = 0.0146	Class C: plasma membrane	MSS1 CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ HEXOSEHYDROGEN SYMPORTER/ HIGH-AFFINITY HYDROGENGLUCOSE SYMPORTER/ SUGARHYDROGEN SYMPORTER
AT1G05500	Predicted Affinity Capture-MS	FSW = 0.0119	Class C: plasma membrane	NTMC2T21
AT5G47010	Predicted Affinity Capture-MS	FSW = 0.0038	Class C: plasma membrane	LBA1 (LOW-LEVEL BETA-AMYLASE 1) ATP BINDING / DNA BINDING / RNA HELICASE/ HYDROLASE
AT2G37790	Predicted Phenotypic Enhancement	FSW = 0.0317	Class C: plasma membrane	ALDO/KETO REDUCTASE FAMILY PROTEIN
AT2G47160	Predicted Affinity Capture-MS	FSW = 0.0177	Class C: plasma membrane	BOR1 (REQUIRES HIGH BORON 1) ANION EXCHANGER/ BORON TRANSPORTER
AT5G12150	Predicted two hybrid	FSW = 0.0113	Class C: plasma membrane	PLECKSTRIN HOMOLOGY (PH) DOMAIN-CONTAINING PROTEIN / RHOGAP DOMAIN-CONTAINING PROTEIN
AT5G22440	Predicted Affinity Capture-MS	FSW = 0.3589	Class C: nucleus	60S RIBOSOMAL PROTEIN L10A (RPL10AC)
AT5G04600	Predicted Affinity Capture-MS	FSW = 0.2841	Class C: nucleus	RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT3G55620	Predicted Affinity Capture-MS	FSW = 0.1502	Class C: nucleus	EMB1624 (EMBRYO DEFECTIVE 1624) RIBOSOME BINDING / TRANSLATION INITIATION FACTOR
AT3G23620	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.1664	Class C: nucleus	BRIX DOMAIN-CONTAINING PROTEIN
AT3G57150	Predicted Affinity Capture-MS Co-expression	FSW = 0.1350	Class C: nucleus	NAP57 (ARABIDOPSIS THALIANA HOMOLOGUE OF NAP57) PSEUDOURIDINE SYNTHASE
AT4G09800	Predicted Phenotypic Suppression	FSW = 0.0085	Class C: nucleus	RPS18C (S18 RIBOSOMAL PROTEIN) RNA BINDING / NUCLEIC ACID BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME
AT4G17390	Predicted Affinity Capture-MS	FSW = 0.4051	Class C: nucleus	60S RIBOSOMAL PROTEIN L15 (RPL15B)
AT4G29390	Predicted Affinity Capture-MS	FSW = 0.1569	Class C: nucleus	40S RIBOSOMAL PROTEIN S30 (RPS30B)
AT5G15520	Predicted Affinity Capture-MS	FSW = 0.0948	Class C: nucleus	40S RIBOSOMAL PROTEIN S19 (RPS19B)
AT3G53020	Predicted Affinity Capture-MS	FSW = 0.1933	Class C: nucleus	STV1 (SHORT VALVE1) STRUCTURAL CONSTITUENT OF RIBOSOME
AT5G58420	Predicted Affinity Capture-MS	FSW = 0.3441	Class C: nucleus	40S RIBOSOMAL PROTEIN S4 (RPS4D)
AT1G74060	Predicted Affinity Capture-MS	FSW = 0.2738	Class C: nucleus	60S RIBOSOMAL PROTEIN L6 (RPL6B)
AT1G79020	Predicted synthetic growth defect	FSW = 0.0352	Class C: nucleus	TRANSCRIPTION FACTOR-RELATED
AT1G72440	Predicted Affinity Capture-MS	FSW = 0.2576	Class C: nucleus	EDA25 (EMBRYO SAC DEVELOPMENT ARREST 25)
AT3G16810	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.2092	Class C: nucleus	APUM24 (ARABIDOPSIS PUMILIO 24) RNA BINDING / BINDING
AT5G48240	Predicted Affinity Capture-MS	FSW = 0.1167	Class C: nucleus	UNKNOWN PROTEIN
AT5G54910	Predicted Affinity Capture-MS	FSW = 0.0689	Class C: nucleus	DEAD/DEAH BOX HELICASE PUTATIVE
AT5G55920	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.1614	Class C: nucleus	NUCLEOLAR PROTEIN PUTATIVE
AT3G04610	Predicted Affinity Capture-MS	FSW = 0.0176	Class C: nucleus	FLK (FLOWERING LOCUS KH DOMAIN) RNA BINDING / NUCLEIC ACID BINDING
AT3G58660	Predicted Affinity Capture-MS	FSW = 0.2496	Class C: nucleus	60S RIBOSOMAL PROTEIN-RELATED
AT3G05060	Predicted Affinity Capture-MS	FSW = 0.0966	Class C: nucleus	SAR DNA-BINDING PROTEIN PUTATIVE
AT5G15550	Predicted Affinity Capture-MS	FSW = 0.1283	Class C: nucleus	TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT3G13445	Predicted Phenotypic Enhancement	FSW = 0.0547	Class C: nucleus	TBP1 (TATA BINDING PROTEIN 1) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ BINDING
AT4G13980	Predicted biochemical	FSW = 0.0127	Class C: nucleus	AT-HSFA5 DNA BINDING / TRANSCRIPTION FACTOR
AT3G07100	Predicted two hybrid two hybrid	FSW = 0.0216	Unknown	PROTEIN TRANSPORT PROTEIN SEC24 PUTATIVE
AT2G35690	Predicted two hybrid two hybrid	FSW = 0.0079	Unknown	ACX5 (ACYL-COA OXIDASE 5) FAD BINDING / ACYL-COA DEHYDROGENASE/ ACYL-COA OXIDASE/ ELECTRON CARRIER/ OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON THE CH-CH GROUP OF DONORS
AT2G40360	Predicted Affinity Capture-MS Co-expression	FSW = 0.0943	Unknown	TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT2G30160	Predicted Phenotypic Enhancement	FSW = 0.0780	Unknown	MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN
AT5G40650	Predicted Phenotypic Suppression	FSW = 0.0105	Unknown	SDH2-2 ELECTRON CARRIER/ SUCCINATE DEHYDROGENASE
AT2G47510	Predicted Affinity Capture-MS	FSW = 0.0185	Unknown	FUM1 (FUMARASE 1) CATALYTIC/ FUMARATE HYDRATASE
AT3G49920	Predicted Phenotypic Enhancement	FSW = 0.0418	Unknown	VDAC5 (VOLTAGE DEPENDENT ANION CHANNEL 5) VOLTAGE-GATED ANION CHANNEL
AT1G64880	Predicted Phenotypic Suppression	FSW = 0.0285	Unknown	RIBOSOMAL PROTEIN S5 FAMILY PROTEIN
AT3G54840	Predicted Phenotypic Enhancement	FSW = 0.0622	Unknown	ARA6 GTP BINDING / GTPASE
AT2G03120	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Reconstituted Complex Affinity Capture-Western Affinity Capture-MS Reconstituted Complex Synthetic Lethality Co-crystal Structure	FSW = 0.0363	Unknown	ATSPP (ARABIDOPSIS SIGNAL PEPTIDE PEPTIDASE) ASPARTIC-TYPE ENDOPEPTIDASE
AT2G38960	Predicted biochemical	FSW = 0.0106	Unknown	AERO2 (ARABIDOPSIS ENDOPLASMIC RETICULUM OXIDOREDUCTINS 2) FAD BINDING / ELECTRON CARRIER/ OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS DISULFIDE AS ACCEPTOR / PROTEIN BINDING
AT1G52300	Predicted Phenotypic Suppression	FSW = 0.0522	Unknown	60S RIBOSOMAL PROTEIN L37 (RPL37B)
AT1G50920	Predicted Affinity Capture-MS	FSW = 0.2215	Unknown	GTP-BINDING PROTEIN-RELATED
AT1G61580	Predicted Affinity Capture-MS	FSW = 0.4231	Unknown	RPL3B (R-PROTEIN L3 B) STRUCTURAL CONSTITUENT OF RIBOSOME
AT5G56710	Predicted Affinity Capture-MS	FSW = 0.2712	Unknown	60S RIBOSOMAL PROTEIN L31 (RPL31C)
AT4G30800	Predicted Affinity Capture-MS	FSW = 0.1748	Unknown	40S RIBOSOMAL PROTEIN S11 (RPS11B)
AT4G17620	Predicted Affinity Capture-MS	FSW = 0.1388	Unknown	GLYCINE-RICH PROTEIN
AT5G59240	Predicted Affinity Capture-MS	FSW = 0.2453	Unknown	40S RIBOSOMAL PROTEIN S8 (RPS8B)
AT4G26840	Predicted Affinity Capture-MS	FSW = 0.0436	Unknown	SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1) PROTEIN BINDING / PROTEIN TAG
AT1G10490	Predicted Affinity Capture-MS Affinity Capture-MS Co-expression	FSW = 0.1995	Unknown	UNKNOWN PROTEIN
AT2G29540	Predicted Phenotypic Enhancement	FSW = 0.0614	Unknown	ATRPC14 (RNA POLYMERASE 14 KDA SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION
AT4G17190	Predicted Phenotypic Enhancement	FSW = 0.0553	Unknown	FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) DIMETHYLALLYLTRANSTRANSFERASE/ GERANYLTRANSTRANSFERASE
AT4G16420	Predicted Phenotypic Enhancement	FSW = 0.0332	Unknown	ADA2B (HOMOLOG OF YEAST ADA2 2B) DNA BINDING / TRANSCRIPTION COACTIVATOR/ TRANSCRIPTION FACTOR
AT1G18660	Predicted two hybrid two hybrid	FSW = 0.0154	Unknown	ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEIN
AT5G22020	Predicted two hybrid two hybrid	FSW = 0.0050	Unknown	STRICTOSIDINE SYNTHASE FAMILY PROTEIN
AT1G13640	Predicted Affinity Capture-MS	FSW = 0.0149	Unknown	PHOSPHATIDYLINOSITOL 3- AND 4-KINASE FAMILY PROTEIN
AT1G44820	Predicted Affinity Capture-MS	FSW = 0.0056	Unknown	AMINOACYLASE PUTATIVE / N-ACYL-L-AMINO-ACID AMIDOHYDROLASE PUTATIVE
AT1G49400	Predicted Affinity Capture-MS	FSW = 0.0062	Unknown	EMB1129 (EMBRYO DEFECTIVE 1129) STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G54560	Predicted Phenotypic Suppression	FSW = 0.0364	Unknown	XIE MOTOR/ PROTEIN BINDING
AT1G55150	Predicted Affinity Capture-MS	FSW = 0.0587	Unknown	DEAD BOX RNA HELICASE PUTATIVE (RH20)
AT1G56090	Predicted Affinity Capture-MS	FSW = 0.0151	Unknown	TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN
AT1G57660	Predicted Affinity Capture-MS	FSW = 0.2357	Unknown	60S RIBOSOMAL PROTEIN L21 (RPL21E)
AT1G66590	Predicted Affinity Capture-MS	FSW = 0.0296	Unknown	COX19 FAMILY PROTEIN
AT1G68020	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-Western	FSW = 0.1073	Unknown	ATTPS6 ALPHAALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING)/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS / TREHALOSE-PHOSPHATASE
AT2G21730	Predicted synthetic growth defect	FSW = 0.0144	Unknown	CAD2 (CINNAMYL ALCOHOL DEHYDROGENASE HOMOLOG 2) BINDING / CATALYTIC/ OXIDOREDUCTASE/ ZINC ION BINDING
AT2G30800	Predicted Affinity Capture-MS Affinity Capture-Western Affinity Capture-Western Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-Western	FSW = 0.0296	Unknown	HVT1 (HELICASE IN VASCULAR TISSUE AND TAPETUM) ATP BINDING / HELICASE/ NUCLEIC ACID BINDING
AT2G34357	Predicted Affinity Capture-MS	FSW = 0.1628	Unknown	BINDING
AT2G44100	Predicted Affinity Capture-MS	FSW = 0.0149	Unknown	ATGDI1 (ARABIDOPSIS THALIANA GUANOSINE NUCLEOTIDE DIPHOSPHATE DISSOCIATION INHIBITOR 1) RAB GDP-DISSOCIATION INHIBITOR
AT1G03530	Predicted Affinity Capture-MS	FSW = 0.1178	Unknown	NAF1 (NUCLEAR ASSEMBLY FACTOR 1)
AT1G10170	Predicted Affinity Capture-MS	FSW = 0.0186	Unknown	ATNFXL1 (ARABIDOPSIS THALIANA NF-X-LIKE 1) PROTEIN BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING
AT1G10210	Predicted Phenotypic Suppression	FSW = 0.0311	Unknown	ATMPK1 (MITOGEN-ACTIVATED PROTEIN KINASE 1) MAP KINASE/ KINASE
AT1G16280	Predicted Affinity Capture-MS Co-expression	FSW = 0.0487	Unknown	DEAD/DEAH BOX HELICASE PUTATIVE
AT1G16800	Predicted Affinity Capture-MS	FSW = 0.0078	Unknown	TRNA-SPLICING ENDONUCLEASE POSITIVE EFFECTOR-RELATED
AT1G17070	Predicted Affinity Capture-MS	FSW = 0.0043	Unknown	D111/G-PATCH DOMAIN-CONTAINING PROTEIN
AT1G20080	Predicted Affinity Capture-MS	FSW = 0.0415	Unknown	SYTB
AT1G25510	Predicted Affinity Capture-MS	FSW = 0.0072	Unknown	ASPARTYL PROTEASE FAMILY PROTEIN
AT1G31660	Predicted Affinity Capture-MS Co-expression	FSW = 0.1316	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S BYSTIN (INTERPROIPR007955) HAS 370 BLAST HITS TO 362 PROTEINS IN 156 SPECIES ARCHAE - 0 BACTERIA - 7 METAZOA - 139 FUNGI - 93 PLANTS - 32 VIRUSES - 0 OTHER EUKARYOTES - 99 (SOURCE NCBI BLINK)
AT1G34580	Predicted Phenotypic Enhancement	FSW = 0.0389	Unknown	MONOSACCHARIDE TRANSPORTER PUTATIVE
AT1G44180	Predicted Phenotypic Suppression	FSW = 0.0507	Unknown	AMINOACYLASE PUTATIVE / N-ACYL-L-AMINO-ACID AMIDOHYDROLASE PUTATIVE
AT1G52500	Predicted Phenotypic Suppression	FSW = 0.0647	Unknown	ATMMH-1 (ARABIDOPSIS THALIANA MUTM HOMOLOG-1) DNA N-GLYCOSYLASE
AT1G52980	Predicted Affinity Capture-MS	FSW = 0.1048	Unknown	GTP-BINDING FAMILY PROTEIN
AT1G55300	Predicted Phenotypic Enhancement	FSW = 0.0705	Unknown	TAF7 (TBP-ASSOCIATED FACTOR 7) GENERAL RNA POLYMERASE II TRANSCRIPTION FACTOR
AT1G59760	Predicted Affinity Capture-MS	FSW = 0.0445	Unknown	ATP-DEPENDENT RNA HELICASE PUTATIVE
AT1G60730	Predicted Affinity Capture-MS	FSW = 0.0245	Unknown	ALDO/KETO REDUCTASE FAMILY PROTEIN
AT1G69070	Predicted Affinity Capture-MS Co-expression	FSW = 0.0948	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NOP14-LIKE PROTEIN (INTERPROIPR007276) HAS 64668 BLAST HITS TO 30830 PROTEINS IN 1152 SPECIES ARCHAE - 207 BACTERIA - 18692 METAZOA - 20758 FUNGI - 6782 PLANTS - 2177 VIRUSES - 523 OTHER EUKARYOTES - 15529 (SOURCE NCBI BLINK)
AT1G70290	Predicted biochemical	FSW = 0.0305	Unknown	ATTPS8 ALPHAALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING)/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS / TREHALOSE-PHOSPHATASE
AT1G80410	Predicted Affinity Capture-MS	FSW = 0.0092	Unknown	EMB2753 (EMBRYO DEFECTIVE 2753) BINDING
AT1G80710	Predicted Phenotypic Enhancement	FSW = 0.0502	Unknown	TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT2G15910	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.0853	Unknown	CSL ZINC FINGER DOMAIN-CONTAINING PROTEIN
AT2G17250	Predicted Affinity Capture-MS Co-expression	FSW = 0.0923	Unknown	EMB2762 (EMBRYO DEFECTIVE 2762)
AT2G18220	Predicted Affinity Capture-MS	FSW = 0.1518	Unknown	INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S UNCHARACTERISED PROTEIN FAMILY UPF0120 (INTERPROIPR005343) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS RBL (REBELOTE) (TAIRAT3G555101) HAS 4846 BLAST HITS TO 3236 PROTEINS IN 249 SPECIES ARCHAE - 2 BACTERIA - 127 METAZOA - 2049 FUNGI - 594 PLANTS - 200 VIRUSES - 69 OTHER EUKARYOTES - 1805 (SOURCE NCBI BLINK)
AT2G21440	Predicted Affinity Capture-MS Co-expression	FSW = 0.1611	Unknown	RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT2G31260	Predicted Phenotypic Suppression	FSW = 0.0236	Unknown	APG9 (AUTOPHAGY 9)
AT2G39770	Predicted Affinity Capture-MS	FSW = 0.0719	Unknown	CYT1 (CYTOKINESIS DEFECTIVE 1) MANNOSE-1-PHOSPHATE GUANYLYLTRANSFERASE/ NUCLEOTIDYLTRANSFERASE
AT2G48100	Predicted Phenotypic Enhancement	FSW = 0.0726	Unknown	EXONUCLEASE FAMILY PROTEIN
AT3G01160	Predicted Affinity Capture-MS Co-expression	FSW = 0.0727	Unknown	UNKNOWN PROTEIN
AT3G09720	Predicted Affinity Capture-MS Co-expression	FSW = 0.0127	Unknown	DEAD/DEAH BOX HELICASE PUTATIVE
AT3G10530	Predicted Affinity Capture-MS Affinity Capture-MS Co-expression	FSW = 0.0493	Unknown	TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT3G12670	Predicted Affinity Capture-MS	FSW = 0.0569	Unknown	EMB2742 (EMBRYO DEFECTIVE 2742) CTP SYNTHASE/ CATALYTIC
AT3G16840	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.1701	Unknown	ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING
AT3G18850	Predicted Phenotypic Suppression	FSW = 0.0432	Unknown	LPAT5 ACYLTRANSFERASE
AT3G25900	Predicted Phenotypic Suppression	FSW = 0.0373	Unknown	HMT-1 HOMOCYSTEINE S-METHYLTRANSFERASE
AT3G46960	Predicted Affinity Capture-MS	FSW = 0.0401	Unknown	ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING
AT3G47290	Predicted Phenotypic Suppression	FSW = 0.0326	Unknown	PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN
AT3G50780	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS two hybrid Affinity Capture-MS two hybrid Affinity Capture-MS Reconstituted Complex interologs mapping	FSW = 0.1356	Unknown	INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS PRLI-INTERACTING FACTOR-RELATED (TAIRAT1G638501) HAS 173 BLAST HITS TO 173 PROTEINS IN 14 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 8 FUNGI - 0 PLANTS - 164 VIRUSES - 0 OTHER EUKARYOTES - 1 (SOURCE NCBI BLINK)
AT3G60860	Predicted Affinity Capture-MS	FSW = 0.0315	Unknown	GUANINE NUCLEOTIDE EXCHANGE FAMILY PROTEIN
AT4G01560	Predicted Affinity Capture-MS	FSW = 0.1456	Unknown	MEE49 (MATERNAL EFFECT EMBRYO ARREST 49)
AT4G04700	Predicted Affinity Capture-MS	FSW = 0.0371	Unknown	CPK27 ATP BINDING / CALCIUM ION BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE
AT4G10360	Predicted Phenotypic Suppression	FSW = 0.0549	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN INTEGRAL TO MEMBRANE EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TRAM LAG1 AND CLN8 HOMOLOGY (INTERPROIPR006634) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G313002) HAS 453 BLAST HITS TO 451 PROTEINS IN 101 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 225 FUNGI - 97 PLANTS - 91 VIRUSES - 3 OTHER EUKARYOTES - 37 (SOURCE NCBI BLINK)
AT4G14240	Predicted biochemical	FSW = 0.0058	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PROTEIN OF UNKNOWN FUNCTION DUF21 (INTERPROIPR002550) CYSTATHIONINE BETA-SYNTHASE CORE (INTERPROIPR000644) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS CBS DOMAIN-CONTAINING PROTEIN-RELATED (TAIRAT4G142301) HAS 6770 BLAST HITS TO 6657 PROTEINS IN 1347 SPECIES ARCHAE - 62 BACTERIA - 4461 METAZOA - 254 FUNGI - 179 PLANTS - 121 VIRUSES - 0 OTHER EUKARYOTES - 1693 (SOURCE NCBI BLINK)
AT4G19210	Predicted Affinity Capture-MS	FSW = 0.1438	Unknown	ATRLI2 TRANSPORTER
AT4G19560	Predicted Phenotypic Enhancement	FSW = 0.1048	Unknown	CYCT12 CYCLIN-DEPENDENT PROTEIN KINASE
AT4G19645	Predicted Phenotypic Suppression	FSW = 0.0436	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN INTEGRAL TO MEMBRANE CONTAINS INTERPRO DOMAIN/S TRAM LAG1 AND CLN8 HOMOLOGY (INTERPROIPR006634) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G313002) HAS 401 BLAST HITS TO 401 PROTEINS IN 98 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 186 FUNGI - 102 PLANTS - 84 VIRUSES - 0 OTHER EUKARYOTES - 29 (SOURCE NCBI BLINK)
AT4G24160	Predicted Phenotypic Enhancement	FSW = 0.0187	Unknown	HYDROLASE ALPHA/BETA FOLD FAMILY PROTEIN
AT4G38630	Predicted Affinity Capture-MS	FSW = 0.0391	Unknown	RPN10 (REGULATORY PARTICLE NON-ATPASE 10) PEPTIDE RECEPTOR
AT5G01430	Predicted Phenotypic Enhancement	FSW = 0.0554	Unknown	GOT1-LIKE FAMILY PROTEIN
AT5G05450	Predicted Affinity Capture-MS	FSW = 0.1596	Unknown	DEAD/DEAH BOX HELICASE PUTATIVE (RH18)
AT5G06360	Predicted Affinity Capture-MS	FSW = 0.0911	Unknown	RIBOSOMAL PROTEIN S8E FAMILY PROTEIN
AT5G08420	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.1557	Unknown	RNA BINDING
AT5G14060	Predicted Phenotypic Enhancement	FSW = 0.0862	Unknown	CARAB-AK-LYS AMINO ACID BINDING / ASPARTATE KINASE
AT5G14520	Predicted Affinity Capture-MS Co-expression	FSW = 0.1617	Unknown	PESCADILLO-RELATED
AT5G42720	Predicted Phenotypic Enhancement	FSW = 0.0802	Unknown	GLYCOSYL HYDROLASE FAMILY 17 PROTEIN
AT5G45190	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Reconstituted Complex Affinity Capture-MS Affinity Capture-MS Affinity Capture-Western Reconstituted Complex Synthetic Lethality Co-crystal Structure	FSW = 0.0110	Unknown	CYCLIN FAMILY PROTEIN
AT5G46840	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.1580	Unknown	RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT5G66640	Predicted biochemical	FSW = 0.0124	Unknown	DAR3 (DA1-RELATED PROTEIN 3)
AT3G11230	Predicted Phenotypic Enhancement	FSW = 0.0330	Unknown	YIPPEE FAMILY PROTEIN
AT3G11240	Predicted Affinity Capture-MS	FSW = 0.0833	Unknown	ATE2 (ARGININE-TRNA PROTEIN TRANSFERASE 2) ARGINYLTRANSFERASE
AT3G12200	Predicted Phenotypic Suppression	FSW = 0.0723	Unknown	ATNEK7 (NIMA-RELATED KINASE7) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE
AT3G15460	Predicted Affinity Capture-MS	FSW = 0.2090	Unknown	BRIX DOMAIN-CONTAINING PROTEIN
AT3G18740	Predicted Affinity Capture-MS	FSW = 0.3416	Unknown	60S RIBOSOMAL PROTEIN L30 (RPL30C)
AT3G23390	Predicted Affinity Capture-MS	FSW = 0.2596	Unknown	60S RIBOSOMAL PROTEIN L36A/L44 (RPL36AA)
AT3G24830	Predicted Affinity Capture-MS	FSW = 0.3424	Unknown	60S RIBOSOMAL PROTEIN L13A (RPL13AB)
AT3G55280	Predicted Affinity Capture-MS	FSW = 0.3800	Unknown	RPL23AB (RIBOSOMAL PROTEIN L23AB) RNA BINDING / NUCLEOTIDE BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME
AT4G02120	Predicted Affinity Capture-MS	FSW = 0.0354	Unknown	CTP SYNTHASE PUTATIVE / UTP--AMMONIA LIGASE PUTATIVE
AT5G65900	Predicted Affinity Capture-MS	FSW = 0.3210	Unknown	DEAD/DEAH BOX HELICASE PUTATIVE
AT3G13640	Predicted Affinity Capture-MS	FSW = 0.0534	Unknown	ATRLI1 TRANSPORTER
AT1G30820	Predicted Affinity Capture-MS	FSW = 0.0319	Unknown	CTP SYNTHASE PUTATIVE / UTP--AMMONIA LIGASE PUTATIVE
AT1G01960	Predicted Affinity Capture-MS	FSW = 0.0247	Unknown	EDA10 (EMBRYO SAC DEVELOPMENT ARREST 10) ARF GUANYL-NUCLEOTIDE EXCHANGE FACTOR/ BINDING / GUANYL-NUCLEOTIDE EXCHANGE FACTOR

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Fasta sequences:

Proteins

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from

Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment

Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment

Class C: Same as Class A but the PPI is predicted

Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB

Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

Welcome to AtPIN

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AT3G09630 - ( 60S ribosomal protein L4/L1 (RPL4A) )

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