Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G38960 - ( AERO2 (Arabidopsis endoplasmic reticulum oxidoreductins 2) FAD binding / electron carrier/ oxidoreductase acting on sulfur group of donors disulfide as acceptor / protein binding )
82 Proteins interacs with AT2G38960Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G01720 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0237
| Class C:endoplasmic reticulum | RIBOPHORIN I FAMILY PROTEIN |
AT1G77510 | PredictedAffinity Capture-Western | FSW = 0.0144
| Class C:endoplasmic reticulum | ATPDIL1-2 (PDI-LIKE 1-2) PROTEIN DISULFIDE ISOMERASE |
AT5G19320 | Predictedbiochemical | FSW = 0.0051
| Class C:endoplasmic reticulum | RANGAP2 (RAN GTPASE ACTIVATING PROTEIN 2) RAN GTPASE ACTIVATOR |
AT5G60640 | Predictedin vivoin vivo | FSW = 0.0277
| Class C:endoplasmic reticulum | ATPDIL1-4 (PDI-LIKE 1-4) PROTEIN DISULFIDE ISOMERASE |
AT1G14010 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2989
| Class C:endoplasmic reticulum | EMP24/GP25L/P24 FAMILY PROTEIN |
AT1G22200 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0155
| Class C:endoplasmic reticulum | UNKNOWN PROTEIN |
AT3G54300 | PredictedAffinity Capture-WesternAffinity Capture-MS | FSW = 0.1720
| Class C:endoplasmic reticulum | ATVAMP727 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 727) |
AT1G72280 | PredictedPhylogenetic profile method | FSW = 0.0824
| Class C:endoplasmic reticulum | AERO1 (ARABIDOPSIS ENDOPLASMIC RETICULUM OXIDOREDUCTINS 1) FAD BINDING / ELECTRON CARRIER/ OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS DISULFIDE AS ACCEPTOR / PROTEIN BINDING |
AT5G08335 | PredictedPhenotypic Enhancement | FSW = 0.0044
| Class C:endoplasmic reticulum | ATSTE14B PROTEIN-S-ISOPRENYLCYSTEINE O-METHYLTRANSFERASE |
AT3G01280 | PredictedAffinity Capture-MS | FSW = 0.1958
| Unknown | VDAC1 (VOLTAGE DEPENDENT ANION CHANNEL 1) VOLTAGE-GATED ANION CHANNEL |
AT3G02090 | Predictedbiochemical | FSW = 0.0050
| Unknown | MITOCHONDRIAL PROCESSING PEPTIDASE BETA SUBUNIT PUTATIVE |
AT2G33120 | PredictedAffinity Capture-MS | FSW = 0.0094
| Unknown | SAR1 (SYNAPTOBREVIN-RELATED PROTEIN 1) |
AT1G21720 | Predictedbiochemical | FSW = 0.0167
| Unknown | PBC1 (PROTEASOME BETA SUBUNIT C1) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT3G09630 | Predictedbiochemical | FSW = 0.0106
| Unknown | 60S RIBOSOMAL PROTEIN L4/L1 (RPL4A) |
AT5G09590 | PredictedSynthetic LethalityPhenotypic Enhancement | FSW = 0.0150
| Unknown | MTHSC70-2 (MITOCHONDRIAL HSP70 2) ATP BINDING |
AT1G72730 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSSynthetic Lethality | FSW = 0.1427
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 4A PUTATIVE / EIF-4A PUTATIVE |
AT1G22840 | Predictedbiochemical | FSW = 0.0155
| Unknown | CYTC-1 (CYTOCHROME C-1) ELECTRON CARRIER/ HEME BINDING / IRON ION BINDING |
AT5G13450 | Predictedbiochemical | FSW = 0.0178
| Unknown | ATP SYNTHASE DELTA CHAIN MITOCHONDRIAL PUTATIVE / H(+)-TRANSPORTING TWO-SECTOR ATPASE DELTA (OSCP) SUBUNIT PUTATIVE |
AT3G09820 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3195
| Unknown | ADK1 (ADENOSINE KINASE 1) ADENOSINE KINASE/ COPPER ION BINDING |
AT5G65430 | PredictedPhenotypic Enhancement | FSW = 0.0163
| Unknown | GRF8 (GENERAL REGULATORY FACTOR 8) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT1G55920 | PredictedPhenotypic Enhancement | FSW = 0.0268
| Unknown | ATSERAT21 (SERINE ACETYLTRANSFERASE 21) SERINE O-ACETYLTRANSFERASE |
AT1G48850 | PredictedAffinity Capture-MS | FSW = 0.0455
| Unknown | EMB1144 (EMBRYO DEFECTIVE 1144) CHORISMATE SYNTHASE |
AT1G07790 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0992
| Unknown | HTB1 DNA BINDING |
AT3G48870 | Predictedinterologs mappingSynthetic RescuePhenotypic Enhancement | FSW = 0.0392
| Unknown | HSP93-III ATP BINDING / ATPASE/ DNA BINDING / NUCLEASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT1G18870 | PredictedAffinity Capture-MS | FSW = 0.2319
| Unknown | ICS2 (ISOCHORISMATE SYNTHASE 2) ISOCHORISMATE SYNTHASE |
AT2G14120 | Predictedbiochemical | FSW = 0.0239
| Unknown | DYNAMIN-LIKE PROTEIN 2B (ADL2B) |
AT4G28950 | Predictedbiochemical | FSW = 0.0104
| Unknown | ROP9 (RHO-RELATED PROTEIN FROM PLANTS 9) GTP BINDING |
AT4G08690 | PredictedAffinity Capture-MS | FSW = 0.2678
| Unknown | SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLYCERIDE TRANSFER FAMILY PROTEIN |
AT1G05570 | Predictedinteraction prediction | FSW = 0.0120
| Unknown | CALS1 (CALLOSE SYNTHASE 1) 13-BETA-GLUCAN SYNTHASE/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS |
AT1G04750 | Predictedbiochemical | FSW = 0.0210
| Unknown | VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721) |
AT3G25800 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1734
| Unknown | PP2AA2 (PROTEIN PHOSPHATASE 2A SUBUNIT A2) PROTEIN PHOSPHATASE TYPE 2A REGULATOR |
AT5G45380 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3398
| Unknown | SODIUMSOLUTE SYMPORTER FAMILY PROTEIN |
AT3G07560 | Predictedinterologs mappingSynthetic RescuePhenotypic Enhancement | FSW = 0.0473
| Unknown | PEX13 (PEROXIN 13) PROTEIN BINDING |
AT4G14340 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3399
| Unknown | CKI1 (CASEIN KINASE I) KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G59960 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2634
| Unknown | UNKNOWN PROTEIN |
AT2G40290 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0699
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 1 PUTATIVE / EIF-2A PUTATIVE / EIF-2-ALPHA PUTATIVE |
AT3G19760 | Predictedinteraction prediction | FSW = 0.0473
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 4A PUTATIVE / EIF-4A PUTATIVE / DEAD BOX RNA HELICASE PUTATIVE |
AT4G34430 | Predictedtwo hybrid | FSW = 0.0274
| Unknown | CHB3 DNA BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING |
AT1G79020 | PredictedSynthetic Rescueinterologs mapping | FSW = 0.0225
| Unknown | TRANSCRIPTION FACTOR-RELATED |
AT3G13445 | PredictedPhenotypic Enhancement | FSW = 0.0077
| Unknown | TBP1 (TATA BINDING PROTEIN 1) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ BINDING |
AT1G30810 | PredictedAffinity Capture-MS | FSW = 0.2722
| Unknown | TRANSCRIPTION FACTOR |
AT3G08980 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3455
| Unknown | SIGNAL PEPTIDASE I FAMILY PROTEIN |
AT3G55605 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1837
| Unknown | MITOCHONDRIAL GLYCOPROTEIN FAMILY PROTEIN / MAM33 FAMILY PROTEIN |
AT4G07820 | PredictedAffinity Capture-MS | FSW = 0.1355
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT1G50110 | Predictedbiochemical | FSW = 0.0223
| Unknown | BRANCHED-CHAIN AMINO ACID AMINOTRANSFERASE 6 / BRANCHED-CHAIN AMINO ACID TRANSAMINASE 6 (BCAT6) |
AT2G05840 | Predictedbiochemical | FSW = 0.0261
| Unknown | PAA2 (20S PROTEASOME SUBUNIT PAA2) ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT5G48690 | Predictedtwo hybrid | FSW = 0.0119
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN CONTAINS INTERPRO DOMAIN/S UBIQUITIN-ASSOCIATED/TRANSLATION ELONGATION FACTOR EF1B N-TERMINAL (INTERPROIPR000449) UBIQUITIN-ASSOCIATED/TRANSLATION ELONGATION FACTOR EF1B N-TERMINAL EUKARYOTE (INTERPROIPR015940) PUG (INTERPROIPR006567) UBA-LIKE (INTERPROIPR009060) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UBIQUITIN-ASSOCIATED (UBA)/TS-N DOMAIN-CONTAINING PROTEIN (TAIRAT1G048501) HAS 6741 BLAST HITS TO 4773 PROTEINS IN 362 SPECIES ARCHAE - 9 BACTERIA - 355 METAZOA - 2762 FUNGI - 868 PLANTS - 184 VIRUSES - 19 OTHER EUKARYOTES - 2544 (SOURCE NCBI BLINK) |
AT1G06790 | PredictedAffinity Capture-MS | FSW = 0.1627
| Unknown | RNA POLYMERASE RPB7 N-TERMINAL DOMAIN-CONTAINING PROTEIN |
AT1G10350 | PredictedAffinity Capture-MS | FSW = 0.1752
| Unknown | DNAJ HEAT SHOCK PROTEIN PUTATIVE |
AT1G11530 | Predictedbiochemical | FSW = 0.0054
| Unknown | ATCXXS1 (C-TERMINAL CYSTEINE RESIDUE IS CHANGED TO A SERINE 1) PROTEIN DISULFIDE ISOMERASE |
AT1G18550 | PredictedAffinity Capture-MS | FSW = 0.0674
| Unknown | ATP BINDING / MICROTUBULE MOTOR |
AT1G27040 | PredictedAffinity Capture-MS | FSW = 0.0293
| Unknown | NITRATE TRANSPORTER PUTATIVE |
AT1G27080 | PredictedAffinity Capture-MS | FSW = 0.1347
| Unknown | NRT16 (NITRATE TRANSPORTER 16) LOW AFFINITY NITRATE TRANSMEMBRANE TRANSPORTER/ TRANSPORTER |
AT1G59580 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0792
| Unknown | ATMPK2 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE HOMOLOG 2) MAP KINASE/ KINASE/ PROTEIN KINASE |
AT1G69750 | PredictedSynthetic Rescue | FSW = 0.0525
| Unknown | COX19 FAMILY PROTEIN |
AT2G01770 | Predictedbiochemical | FSW = 0.0121
| Unknown | VIT1 (VACUOLAR IRON TRANSPORTER 1) IRON ION TRANSMEMBRANE TRANSPORTER |
AT2G13680 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0036
| Unknown | CALS5 (CALLOSE SYNTHASE 5) 13-BETA-GLUCAN SYNTHASE |
AT2G20410 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSSynthetic Lethality | FSW = 0.3634
| Unknown | ACTIVATING SIGNAL COINTEGRATOR-RELATED |
AT2G29940 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2247
| Unknown | PDR3 (PLEIOTROPIC DRUG RESISTANCE 3) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
AT2G31060 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MStwo hybridAffinity Capture-MSAffinity Capture-MS | FSW = 0.4437
| Unknown | ELONGATION FACTOR FAMILY PROTEIN |
AT2G34250 | Predictedbiochemical | FSW = 0.0096
| Unknown | PROTEIN TRANSPORT PROTEIN SEC61 PUTATIVE |
AT2G35390 | Predictedbiochemical | FSW = 0.0457
| Unknown | RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 1 / PHOSPHORIBOSYL DIPHOSPHATE SYNTHETASE 1 (PRSI) |
AT2G36060 | Predictedbiochemical | FSW = 0.0264
| Unknown | UBIQUITIN-CONJUGATING ENZYME FAMILY PROTEIN |
AT1G15440 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0271
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT2G47760 | PredictedReconstituted Complexbiochemical | FSW = 0.0105
| Unknown | ALG3 ALPHA-13-MANNOSYLTRANSFERASE/ CATALYTIC |
AT3G53880 | PredictedAffinity Capture-MStwo hybridAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSCo-purificationAffinity Capture-MSAffinity Capture-MStwo hybridCo-purificationAffinity Capture-Westernfar western blotting | FSW = 0.2994
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
AT4G31985 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MStwo hybrid | FSW = 0.2776
| Unknown | 60S RIBOSOMAL PROTEIN L39 (RPL39C) |
AT5G03030 | PredictedAffinity Capture-MSReconstituted Complextwo hybridAffinity Capture-MS | FSW = 0.1870
| Unknown | DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN |
AT5G63650 | PredictedSynthetic Rescue | FSW = 0.0350
| Unknown | SNRK25 (SNF1-RELATED PROTEIN KINASE 25) KINASE |
AT2G47870 | Predictedbiochemical | FSW = 0.0075
| Unknown | GLUTAREDOXIN FAMILY PROTEIN |
AT3G01340 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0127
| Unknown | PROTEIN TRANSPORT PROTEIN SEC13 FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT3G05760 | PredictedAffinity Capture-MS | FSW = 0.1919
| Unknown | NUCLEIC ACID BINDING / ZINC ION BINDING |
AT3G57140 | Predictedbiochemical | FSW = 0.0160
| Unknown | PATATIN-RELATED |
AT4G00980 | Predictedbiochemical | FSW = 0.0291
| Unknown | ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN |
AT4G19645 | Predictedbiochemical | FSW = 0.0184
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN INTEGRAL TO MEMBRANE CONTAINS INTERPRO DOMAIN/S TRAM LAG1 AND CLN8 HOMOLOGY (INTERPROIPR006634) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G313002) HAS 401 BLAST HITS TO 401 PROTEINS IN 98 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 186 FUNGI - 102 PLANTS - 84 VIRUSES - 0 OTHER EUKARYOTES - 29 (SOURCE NCBI BLINK) |
AT5G06150 | PredictedAffinity Capture-MS | FSW = 0.0405
| Unknown | CYC1BAT CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT5G13010 | Predictedbiochemical | FSW = 0.0170
| Unknown | EMB3011 (EMBRYO DEFECTIVE 3011) ATP BINDING / RNA HELICASE/ HELICASE/ NUCLEIC ACID BINDING |
AT5G16960 | PredictedAffinity Capture-MS | FSW = 0.2979
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
AT5G44830 | Predictedbiochemical | FSW = 0.0374
| Unknown | GLYCOSIDE HYDROLASE FAMILY 28 PROTEIN / POLYGALACTURONASE (PECTINASE) FAMILY PROTEIN |
AT5G45020 | Predictedbiochemical | FSW = 0.0174
| Unknown | LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S GLUTATHIONE S-TRANSFERASE PREDICTED (INTERPROIPR016639) GLUTATHIONE S-TRANSFERASE C-TERMINAL (INTERPROIPR004046) GLUTATHIONE S-TRANSFERASE C-TERMINAL-LIKE (INTERPROIPR010987) GLUTATHIONE S-TRANSFERASE/CHLORIDE CHANNEL C-TERMINAL (INTERPROIPR017933) THIOREDOXIN-LIKE FOLD (INTERPROIPR012336) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT4G198801) HAS 1632 BLAST HITS TO 1632 PROTEINS IN 489 SPECIES ARCHAE - 12 BACTERIA - 907 METAZOA - 22 FUNGI - 156 PLANTS - 57 VIRUSES - 0 OTHER EUKARYOTES - 478 (SOURCE NCBI BLINK) |
AT5G55180 | Predictedbiochemical | FSW = 0.0099
| Unknown | GLYCOSYL HYDROLASE FAMILY 17 PROTEIN |
AT5G59890 | PredictedAffinity Capture-MS | FSW = 0.1839
| Unknown | ADF4 (ACTIN DEPOLYMERIZING FACTOR 4) ACTIN BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454