Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G59960 - ( unknown protein )
47 Proteins interacs with AT5G59960Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G19830 | Predictedtwo hybrid | FSW = 0.0172
| Class C:nucleus | AMINOACYL-TRNA HYDROLASE |
AT4G14340 | PredictedAffinity Capture-MS | FSW = 0.3789
| Class C:nucleus | CKI1 (CASEIN KINASE I) KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT1G30810 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.7326
| Class C:nucleus | TRANSCRIPTION FACTOR |
AT3G66656 | PredictedAffinity Capture-MS | FSW = 0.0456
| Class C:nucleus | AGL91 TRANSCRIPTION FACTOR |
AT3G01280 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3979
| Unknown | VDAC1 (VOLTAGE DEPENDENT ANION CHANNEL 1) VOLTAGE-GATED ANION CHANNEL |
AT1G14010 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.6197
| Unknown | EMP24/GP25L/P24 FAMILY PROTEIN |
AT3G09820 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-purificationAffinity Capture-MSCo-purification | FSW = 0.5904
| Unknown | ADK1 (ADENOSINE KINASE 1) ADENOSINE KINASE/ COPPER ION BINDING |
AT5G15450 | PredictedAffinity Capture-MS | FSW = 0.1078
| Unknown | CLPB3 (CASEIN LYTIC PROTEINASE B3) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT1G31190 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3418
| Unknown | IMPL1 (MYO-INOSITOL MONOPHOSPHATASE LIKE 1) 3(2)5-BISPHOSPHATE NUCLEOTIDASE/ INOSITOL OR PHOSPHATIDYLINOSITOL PHOSPHATASE/ INOSITOL-1(OR 4)-MONOPHOSPHATASE |
AT5G49030 | PredictedSynthetic Lethality | FSW = 0.1674
| Unknown | OVA2 (OVULE ABORTION 2) ATP BINDING / AMINOACYL-TRNA LIGASE/ CATALYTIC/ ISOLEUCINE-TRNA LIGASE/ NUCLEOTIDE BINDING |
AT1G18870 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4008
| Unknown | ICS2 (ISOCHORISMATE SYNTHASE 2) ISOCHORISMATE SYNTHASE |
AT4G08690 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.6252
| Unknown | SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLYCERIDE TRANSFER FAMILY PROTEIN |
AT4G04720 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSSynthetic Lethality | FSW = 0.3620
| Unknown | CPK21 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G45380 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.6722
| Unknown | SODIUMSOLUTE SYMPORTER FAMILY PROTEIN |
AT3G46900 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4283
| Unknown | COPT2 COPPER ION TRANSMEMBRANE TRANSPORTER/ HIGH AFFINITY COPPER ION TRANSMEMBRANE TRANSPORTER |
AT3G08980 | PredictedAffinity Capture-MS | FSW = 0.6153
| Unknown | SIGNAL PEPTIDASE I FAMILY PROTEIN |
AT3G54300 | PredictedAffinity Capture-MS | FSW = 0.1353
| Unknown | ATVAMP727 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 727) |
AT2G38960 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2634
| Unknown | AERO2 (ARABIDOPSIS ENDOPLASMIC RETICULUM OXIDOREDUCTINS 2) FAD BINDING / ELECTRON CARRIER/ OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS DISULFIDE AS ACCEPTOR / PROTEIN BINDING |
AT4G30660 | PredictedAffinity Capture-MS | FSW = 0.0640
| Unknown | HYDROPHOBIC PROTEIN PUTATIVE / LOW TEMPERATURE AND SALT RESPONSIVE PROTEIN PUTATIVE |
AT4G17190 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1462
| Unknown | FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) DIMETHYLALLYLTRANSTRANSFERASE/ GERANYLTRANSTRANSFERASE |
AT3G12280 | PredictedPhenotypic Enhancement | FSW = 0.0091
| Unknown | RBR1 (RETINOBLASTOMA-RELATED 1) TRANSCRIPTION FACTOR BINDING |
AT5G49310 | Predictedtwo hybrid | FSW = 0.0147
| Unknown | IMPA-5 (IMPORTIN ALPHA ISOFORM 5) BINDING / PROTEIN TRANSPORTER |
AT5G12210 | Predictedtwo hybrid | FSW = 0.0139
| Unknown | GERANYLGERANYL TRANSFERASE TYPE II BETA SUBUNIT PUTATIVE / RAB GERANYLGERANYLTRANSFERASE BETA SUBUNIT PUTATIVE |
AT1G10350 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4384
| Unknown | DNAJ HEAT SHOCK PROTEIN PUTATIVE |
AT1G21370 | PredictedAffinity Capture-MS | FSW = 0.2014
| Unknown | UNKNOWN PROTEIN |
AT1G22290 | Predictedtwo hybrid | FSW = 0.0294
| Unknown | 14-3-3 PROTEIN GF14 PUTATIVE (GRF10) |
AT1G74250 | PredictedAffinity Capture-MS | FSW = 0.5326
| Unknown | DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN |
AT2G29940 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.7954
| Unknown | PDR3 (PLEIOTROPIC DRUG RESISTANCE 3) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
AT3G05760 | PredictedAffinity Capture-MStwo hybridtwo hybridAffinity Capture-MS | FSW = 0.5644
| Unknown | NUCLEIC ACID BINDING / ZINC ION BINDING |
AT4G29910 | PredictedAffinity Capture-MS | FSW = 0.4698
| Unknown | ORC5 (ORIGIN RECOGNITION COMPLEX PROTEIN 5) PROTEIN BINDING |
AT5G16960 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.5476
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
AT1G02730 | PredictedAffinity Capture-MS | FSW = 0.2931
| Unknown | ATCSLD5 14-BETA-D-XYLAN SYNTHASE/ CELLULOSE SYNTHASE |
AT1G05830 | PredictedAffinity Capture-MS | FSW = 0.3551
| Unknown | ATX2 (ARABIDOPSIS TRITHORAX-LIKE PROTEIN 2) DNA BINDING / HISTONE METHYLTRANSFERASE(H3-K4 SPECIFIC) |
AT1G06790 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4915
| Unknown | RNA POLYMERASE RPB7 N-TERMINAL DOMAIN-CONTAINING PROTEIN |
AT1G10940 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3420
| Unknown | SNRK24 (SNF1-RELATED PROTEIN KINASE 24) KINASE |
AT2G20410 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.6458
| Unknown | ACTIVATING SIGNAL COINTEGRATOR-RELATED |
AT2G29680 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.5359
| Unknown | CDC6 (CELL DIVISION CONTROL 6) |
AT2G31060 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.5147
| Unknown | ELONGATION FACTOR FAMILY PROTEIN |
AT3G52590 | PredictedAffinity Capture-MS | FSW = 0.4258
| Unknown | UBQ1 (UBIQUITIN EXTENSION PROTEIN 1) PROTEIN BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
AT3G53880 | PredictedAffinity Capture-MSAffinity Capture-MSCo-purification | FSW = 0.5104
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
AT3G54150 | PredictedAffinity Capture-MS | FSW = 0.0133
| Unknown | EMBRYO-ABUNDANT PROTEIN-RELATED |
AT3G54630 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3476
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 11 PLANT STRUCTURES EXPRESSED DURING 6 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S KINETOCHORE PROTEIN NDC80 (INTERPROIPR005550) HAS 19800 BLAST HITS TO 12108 PROTEINS IN 845 SPECIES ARCHAE - 345 BACTERIA - 1709 METAZOA - 11031 FUNGI - 1499 PLANTS - 797 VIRUSES - 39 OTHER EUKARYOTES - 4380 (SOURCE NCBI BLINK) |
AT4G00810 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4077
| Unknown | 60S ACIDIC RIBOSOMAL PROTEIN P1 (RPP1B) |
AT4G31770 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.5502
| Unknown | CALCINEURIN-LIKE PHOSPHOESTERASE FAMILY PROTEIN |
AT4G31985 | PredictedAffinity Capture-MS | FSW = 0.3333
| Unknown | 60S RIBOSOMAL PROTEIN L39 (RPL39C) |
AT5G49970 | PredictedAffinity Capture-MS | FSW = 0.1411
| Unknown | ATPPOX (A THALIANA PYRIDOXIN (PYRODOXAMINE) 5-PHOSPHATE OXIDASE) PYRIDOXAMINE-PHOSPHATE OXIDASE |
AT5G59890 | PredictedAffinity Capture-MS | FSW = 0.3902
| Unknown | ADF4 (ACTIN DEPOLYMERIZING FACTOR 4) ACTIN BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454