Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G53880 - ( aldo/keto reductase family protein )
97 Proteins interacs with AT3G53880| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT2G27960
   | ExperimentalAffinity Capture-MSaffinity technology | FSW = 0.0025
| Unknown | CKS1 (CYCLIN-DEPENDENT KINASE-SUBUNIT 1) CYCLIN-DEPENDENT PROTEIN KINASE/ PROTEIN BINDING |
| AT3G01280
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-purification | FSW = 0.2919
| Unknown | VDAC1 (VOLTAGE DEPENDENT ANION CHANNEL 1) VOLTAGE-GATED ANION CHANNEL |
| AT3G16480
| PredictedCo-purification | FSW = 0.0220
| Unknown | MPPALPHA (MITOCHONDRIAL PROCESSING PEPTIDASE ALPHA SUBUNIT) CATALYTIC/ METAL ION BINDING / METALLOENDOPEPTIDASE/ ZINC ION BINDING |
| AT1G72730
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1362
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 4A PUTATIVE / EIF-4A PUTATIVE |
| AT3G08710
| PredictedCo-purification | FSW = 0.0573
| Unknown | ATH9 (THIOREDOXIN H-TYPE 9) |
| AT3G62150
| PredictedCo-purification | FSW = 0.0571
| Unknown | PGP21 (P-GLYCOPROTEIN 21) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
| AT1G07930 | PredictedCo-purification | FSW = 0.0976
| Unknown | ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA |
| AT1G14010
| PredictedAffinity Capture-MSAffinity Capture-MSCo-purification | FSW = 0.4626
| Unknown | EMP24/GP25L/P24 FAMILY PROTEIN |
| AT3G08950
| PredictedCo-purification | FSW = 0.1064
| Unknown | ELECTRON TRANSPORT SCO1/SENC FAMILY PROTEIN |
| AT3G08530
| PredictedCo-purification | FSW = 0.0163
| Unknown | CLATHRIN HEAVY CHAIN PUTATIVE |
| AT3G09820
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-purification | FSW = 0.5003
| Unknown | ADK1 (ADENOSINE KINASE 1) ADENOSINE KINASE/ COPPER ION BINDING |
| AT1G48850
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0388
| Unknown | EMB1144 (EMBRYO DEFECTIVE 1144) CHORISMATE SYNTHASE |
| AT3G16950
| PredictedCo-purification | FSW = 0.0851
| Unknown | LPD1 (LIPOAMIDE DEHYDROGENASE 1) DIHYDROLIPOYL DEHYDROGENASE |
| AT1G07790
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0972
| Unknown | HTB1 DNA BINDING |
| AT1G16880
| PredictedCo-purification | FSW = 0.1496
| Unknown | URIDYLYLTRANSFERASE-RELATED |
| AT3G44610
| PredictedCo-purification | FSW = 0.0487
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
| AT5G13050
| PredictedCo-purification | FSW = 0.0545
| Unknown | 5-FCL (5-FORMYLTETRAHYDROFOLATE CYCLOLIGASE) 5-FORMYLTETRAHYDROFOLATE CYCLO-LIGASE |
| AT5G15450
| PredictedCo-purification | FSW = 0.0877
| Unknown | CLPB3 (CASEIN LYTIC PROTEINASE B3) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
| AT1G31190
| PredictedCo-purification | FSW = 0.1892
| Unknown | IMPL1 (MYO-INOSITOL MONOPHOSPHATASE LIKE 1) 3(2)5-BISPHOSPHATE NUCLEOTIDASE/ INOSITOL OR PHOSPHATIDYLINOSITOL PHOSPHATASE/ INOSITOL-1(OR 4)-MONOPHOSPHATASE |
| AT1G18870
| PredictedAffinity Capture-MSCo-purification | FSW = 0.2987
| Unknown | ICS2 (ISOCHORISMATE SYNTHASE 2) ISOCHORISMATE SYNTHASE |
| AT4G34460
| PredictedGene fusion method | FSW = 0.0081
| Unknown | AGB1 (GTP BINDING PROTEIN BETA 1) GTPASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
| AT4G08690
| PredictedAffinity Capture-MSAffinity Capture-MSCo-purification | FSW = 0.4501
| Unknown | SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLYCERIDE TRANSFER FAMILY PROTEIN |
| AT4G04720
| PredictedAffinity Capture-MS | FSW = 0.2303
| Unknown | CPK21 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
| AT3G25800
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-purification | FSW = 0.1646
| Unknown | PP2AA2 (PROTEIN PHOSPHATASE 2A SUBUNIT A2) PROTEIN PHOSPHATASE TYPE 2A REGULATOR |
| AT1G63110
| PredictedCo-purification | FSW = 0.2152
| Unknown | CELL DIVISION CYCLE PROTEIN-RELATED |
| AT5G45380
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-purification | FSW = 0.4997
| Unknown | SODIUMSOLUTE SYMPORTER FAMILY PROTEIN |
| AT3G46900
| PredictedCo-purificationAffinity Capture-MS | FSW = 0.3001
| Unknown | COPT2 COPPER ION TRANSMEMBRANE TRANSPORTER/ HIGH AFFINITY COPPER ION TRANSMEMBRANE TRANSPORTER |
| AT2G37790
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.0524
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
| AT5G59950
| PredictedCo-purification | FSW = 0.0322
| Unknown | RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE |
| AT4G14340
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-purification | FSW = 0.3311
| Unknown | CKI1 (CASEIN KINASE I) KINASE/ PROTEIN SERINE/THREONINE KINASE |
| AT2G29560
| PredictedCo-purification | FSW = 0.0267
| Unknown | ENOLASE PUTATIVE |
| AT5G59960
| PredictedAffinity Capture-MSAffinity Capture-MSCo-purification | FSW = 0.5104
| Unknown | UNKNOWN PROTEIN |
| AT1G06960
| PredictedCo-purification | FSW = 0.0530
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN U2B PUTATIVE / SPLICEOSOMAL PROTEIN PUTATIVE |
| AT2G40290
| PredictedAffinity Capture-MS | FSW = 0.0364
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 1 PUTATIVE / EIF-2A PUTATIVE / EIF-2-ALPHA PUTATIVE |
| AT4G31720
| PredictedCo-purification | FSW = 0.0065
| Unknown | TAFII15 (TBP-ASSOCIATED FACTOR II 15) RNA POLYMERASE II TRANSCRIPTION FACTOR/ TRANSCRIPTION FACTOR |
| AT1G30810
| PredictedCo-purificationAffinity Capture-MS | FSW = 0.4272
| Unknown | TRANSCRIPTION FACTOR |
| AT3G08980
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-purification | FSW = 0.4785
| Unknown | SIGNAL PEPTIDASE I FAMILY PROTEIN |
| AT3G55605
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-purification | FSW = 0.1587
| Unknown | MITOCHONDRIAL GLYCOPROTEIN FAMILY PROTEIN / MAM33 FAMILY PROTEIN |
| AT4G07820
| PredictedAffinity Capture-MS | FSW = 0.1169
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
| AT3G54300
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternReconstituted Complex | FSW = 0.1324
| Unknown | ATVAMP727 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 727) |
| AT2G38960
| PredictedAffinity Capture-MStwo hybridAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSCo-purificationAffinity Capture-MSAffinity Capture-MStwo hybridCo-purificationAffinity Capture-Westernfar western blotting | FSW = 0.2994
| Unknown | AERO2 (ARABIDOPSIS ENDOPLASMIC RETICULUM OXIDOREDUCTINS 2) FAD BINDING / ELECTRON CARRIER/ OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS DISULFIDE AS ACCEPTOR / PROTEIN BINDING |
| AT4G35640
| PredictedCo-purification | FSW = 0.0667
| Unknown | ATSERAT32 (SERINE ACETYLTRANSFERASE 32) ACETYLTRANSFERASE/ SERINE O-ACETYLTRANSFERASE |
| AT1G50110
| PredictedCo-purification | FSW = 0.0286
| Unknown | BRANCHED-CHAIN AMINO ACID AMINOTRANSFERASE 6 / BRANCHED-CHAIN AMINO ACID TRANSAMINASE 6 (BCAT6) |
| AT5G41480
| PredictedCo-purification | FSW = 0.0831
| Unknown | GLA1 (GLOBULAR ARREST1) DIHYDROFOLATE SYNTHASE |
| AT3G12530
| PredictedCo-purification | FSW = 0.0684
| Unknown | PSF2 |
| AT3G22880
| PredictedCo-purification | FSW = 0.0623
| Unknown | DMC1 (DISRUPTION OF MEIOTIC CONTROL 1) ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
| AT4G17190
| PredictedCo-purification | FSW = 0.1470
| Unknown | FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) DIMETHYLALLYLTRANSTRANSFERASE/ GERANYLTRANSTRANSFERASE |
| AT1G02730
| PredictedCo-purification | FSW = 0.1523
| Unknown | ATCSLD5 14-BETA-D-XYLAN SYNTHASE/ CELLULOSE SYNTHASE |
| AT1G05830
| PredictedCo-purification | FSW = 0.2674
| Unknown | ATX2 (ARABIDOPSIS TRITHORAX-LIKE PROTEIN 2) DNA BINDING / HISTONE METHYLTRANSFERASE(H3-K4 SPECIFIC) |
| AT1G06790
| PredictedAffinity Capture-MSCo-purification | FSW = 0.3151
| Unknown | RNA POLYMERASE RPB7 N-TERMINAL DOMAIN-CONTAINING PROTEIN |
| AT1G06830
| PredictedCo-purification | FSW = 0.0187
| Unknown | GLUTAREDOXIN FAMILY PROTEIN |
| AT1G10350
| PredictedCo-purification | FSW = 0.2747
| Unknown | DNAJ HEAT SHOCK PROTEIN PUTATIVE |
| AT1G10940
| PredictedCo-purification | FSW = 0.1933
| Unknown | SNRK24 (SNF1-RELATED PROTEIN KINASE 24) KINASE |
| AT1G21370
| PredictedCo-purification | FSW = 0.1575
| Unknown | UNKNOWN PROTEIN |
| AT1G22240
| PredictedCo-purification | FSW = 0.0116
| Unknown | APUM8 (ARABIDOPSIS PUMILIO 8) RNA BINDING / BINDING |
| AT1G27040
| PredictedAffinity Capture-MSCo-purification | FSW = 0.0426
| Unknown | NITRATE TRANSPORTER PUTATIVE |
| AT1G27080
| PredictedAffinity Capture-MSCo-purification | FSW = 0.1164
| Unknown | NRT16 (NITRATE TRANSPORTER 16) LOW AFFINITY NITRATE TRANSMEMBRANE TRANSPORTER/ TRANSPORTER |
| AT1G34580
| PredictedCo-purification | FSW = 0.0272
| Unknown | MONOSACCHARIDE TRANSPORTER PUTATIVE |
| AT1G59580
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-purification | FSW = 0.0603
| Unknown | ATMPK2 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE HOMOLOG 2) MAP KINASE/ KINASE/ PROTEIN KINASE |
| AT1G74250
| PredictedCo-purification | FSW = 0.3363
| Unknown | DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN |
| AT1G79210
| PredictedCo-purification | FSW = 0.0336
| Unknown | 20S PROTEASOME ALPHA SUBUNIT B PUTATIVE |
| AT2G16740
| PredictedCo-purification | FSW = 0.0331
| Unknown | UBC29 (UBIQUITIN-CONJUGATING ENZYME 29) UBIQUITIN-PROTEIN LIGASE |
| AT2G20410
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-purification | FSW = 0.5825
| Unknown | ACTIVATING SIGNAL COINTEGRATOR-RELATED |
| AT2G29680
| PredictedCo-purification | FSW = 0.3232
| Unknown | CDC6 (CELL DIVISION CONTROL 6) |
| AT2G29940
| PredictedAffinity Capture-MSCo-purification | FSW = 0.4836
| Unknown | PDR3 (PLEIOTROPIC DRUG RESISTANCE 3) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
| AT2G31060
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MStwo hybridCo-purificationsynthetic growth defect | FSW = 0.4947
| Unknown | ELONGATION FACTOR FAMILY PROTEIN |
| AT3G05540
| PredictedCo-purification | FSW = 0.0561
| Unknown | INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CYTOPLASM CONTAINS INTERPRO DOMAIN/S TRANSLATIONALLY CONTROLLED TUMOUR PROTEIN (INTERPROIPR018105) TRANSLATIONALLY CONTROLLED TUMOUR-ASSOCIATED TCTP (INTERPROIPR001983) MSS4/TRANSLATIONALLY CONTROLLED TUMOUR-ASSOCIATED TCTP (INTERPROIPR011323) TRANSLATIONALLY CONTROLLED TUMOUR PROTEIN CONSERVED SITE (INTERPROIPR018103) MSS4-LIKE (INTERPROIPR011057) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS TCTP (TRANSLATIONALLY CONTROLLED TUMOR PROTEIN) (TAIRAT3G166401) HAS 640 BLAST HITS TO 640 PROTEINS IN 231 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 343 FUNGI - 110 PLANTS - 105 VIRUSES - 0 OTHER EUKARYOTES - 82 (SOURCE NCBI BLINK) |
| AT3G05760
| PredictedAffinity Capture-MSCo-purification | FSW = 0.3833
| Unknown | NUCLEIC ACID BINDING / ZINC ION BINDING |
| AT3G05960
| PredictedCo-purification | FSW = 0.0675
| Unknown | STP6 (SUGAR TRANSPORTER 6) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ MONOSACCHARIDE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
| AT3G12490
| PredictedCo-purification | FSW = 0.0434
| Unknown | CYSTEINE PROTEASE INHIBITOR PUTATIVE / CYSTATIN PUTATIVE |
| AT3G44010 | PredictedAffinity Capture-MS | FSW = 0.0155
| Unknown | 40S RIBOSOMAL PROTEIN S29 (RPS29B) |
| AT3G52390
| PredictedCo-purification | FSW = 0.1074
| Unknown | TATD-RELATED DEOXYRIBONUCLEASE FAMILY PROTEIN |
| AT3G52590 | PredictedCo-purification | FSW = 0.2498
| Unknown | UBQ1 (UBIQUITIN EXTENSION PROTEIN 1) PROTEIN BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT1G47830
| PredictedSynthetic Rescue | FSW = 0.0246
| Unknown | CLATHRIN COAT ASSEMBLY PROTEIN PUTATIVE |
| AT4G29910
| PredictedAffinity Capture-WesternCo-purification | FSW = 0.3575
| Unknown | ORC5 (ORIGIN RECOGNITION COMPLEX PROTEIN 5) PROTEIN BINDING |
| AT4G31985
| PredictedAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MStwo hybridCo-purification | FSW = 0.2420
| Unknown | 60S RIBOSOMAL PROTEIN L39 (RPL39C) |
| AT5G03030
| PredictedAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSCo-purificationAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternCo-purificationSynthetic Lethality | FSW = 0.1610
| Unknown | DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN |
| AT3G54630
| PredictedCo-purification | FSW = 0.1675
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 11 PLANT STRUCTURES EXPRESSED DURING 6 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S KINETOCHORE PROTEIN NDC80 (INTERPROIPR005550) HAS 19800 BLAST HITS TO 12108 PROTEINS IN 845 SPECIES ARCHAE - 345 BACTERIA - 1709 METAZOA - 11031 FUNGI - 1499 PLANTS - 797 VIRUSES - 39 OTHER EUKARYOTES - 4380 (SOURCE NCBI BLINK) |
| AT4G00810
| PredictedCo-purification | FSW = 0.2713
| Unknown | 60S ACIDIC RIBOSOMAL PROTEIN P1 (RPP1B) |
| AT4G31770
| PredictedCo-purification | FSW = 0.3653
| Unknown | CALCINEURIN-LIKE PHOSPHOESTERASE FAMILY PROTEIN |
| AT4G39330
| PredictedCo-purification | FSW = 0.0633
| Unknown | CAD9 (CINNAMYL ALCOHOL DEHYDROGENASE 9) BINDING / CATALYTIC/ OXIDOREDUCTASE/ ZINC ION BINDING |
| AT5G16960
| PredictedAffinity Capture-MSAffinity Capture-MSCo-purification | FSW = 0.3801
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
| AT5G19510
| PredictedCo-purification | FSW = 0.0279
| Unknown | ELONGATION FACTOR 1B ALPHA-SUBUNIT 2 (EEF1BALPHA2) |
| AT5G20340
| PredictedPhenotypic Enhancement | FSW = 0.0256
| Unknown | BG5 (BETA-13-GLUCANASE 5) GLUCAN 13-BETA-GLUCOSIDASE/ HYDROLASE HYDROLYZING O-GLYCOSYL COMPOUNDS |
| AT5G21170
| PredictedCo-purification | FSW = 0.0074
| Unknown | 5-AMP-ACTIVATED PROTEIN KINASE BETA-2 SUBUNIT PUTATIVE |
| AT5G41190
| PredictedCo-purification | FSW = 0.0771
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NIN ONE BINDING (NOB1) ZN-RIBBON LIKE (INTERPROIPR014881) D-SITE 20S PRE-RRNA NUCLEASE (INTERPROIPR017117) HAS 855 BLAST HITS TO 653 PROTEINS IN 196 SPECIES ARCHAE - 53 BACTERIA - 16 METAZOA - 335 FUNGI - 168 PLANTS - 29 VIRUSES - 10 OTHER EUKARYOTES - 244 (SOURCE NCBI BLINK) |
| AT5G49970
| PredictedCo-purification | FSW = 0.1140
| Unknown | ATPPOX (A THALIANA PYRIDOXIN (PYRODOXAMINE) 5-PHOSPHATE OXIDASE) PYRIDOXAMINE-PHOSPHATE OXIDASE |
| AT5G59890
| PredictedAffinity Capture-MSCo-purification | FSW = 0.2596
| Unknown | ADF4 (ACTIN DEPOLYMERIZING FACTOR 4) ACTIN BINDING |
| AT1G59960
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.1372
| Unknown | ALDO/KETO REDUCTASE PUTATIVE |
| AT5G62420
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.1425
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
| AT1G59950
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.1625
| Unknown | ALDO/KETO REDUCTASE PUTATIVE |
| AT2G37760
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.0705
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
| AT2G37770
| PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.1636
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
| AT5G01670
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.0639
| Unknown | ALDOSE REDUCTASE PUTATIVE |
| AT2G21250
| PredictedPhylogenetic profile method | FSW = 0.1167
| Unknown | MANNOSE 6-PHOSPHATE REDUCTASE (NADPH-DEPENDENT) PUTATIVE |
| AT2G21260
| PredictedPhylogenetic profile method | FSW = 0.1481
| Unknown | MANNOSE 6-PHOSPHATE REDUCTASE (NADPH-DEPENDENT) PUTATIVE |
| AT5G56130
| PredictedGene fusion method | FSW = 0.0392
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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