Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G04720 - ( CPK21 ATP binding / calcium ion binding / calmodulin-dependent protein kinase/ kinase/ protein kinase/ protein serine/threonine kinase )
85 Proteins interacs with AT4G04720| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT3G01280
   | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1424
| Class C:plasma membrane | VDAC1 (VOLTAGE DEPENDENT ANION CHANNEL 1) VOLTAGE-GATED ANION CHANNEL |
| AT2G36530
| PredictedSynthetic LethalitySynthetic LethalitySynthetic Lethality | FSW = 0.0106
| Class C:plasma membrane | LOS2 COPPER ION BINDING / PHOSPHOPYRUVATE HYDRATASE |
| AT1G72730
| PredictedAffinity Capture-MS | FSW = 0.0887
| Class C:plasma membrane | EUKARYOTIC TRANSLATION INITIATION FACTOR 4A PUTATIVE / EIF-4A PUTATIVE |
| AT4G19640
| Predictedinterologs mapping | FSW = 0.0082
| Class C:plasma membrane | ARA7 GTP BINDING |
| AT3G08710
| PredictedAffinity Capture-MS | FSW = 0.0311
| Class C:plasma membrane | ATH9 (THIOREDOXIN H-TYPE 9) |
| AT1G11260
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1074
| Class C:plasma membrane | STP1 (SUGAR TRANSPORTER 1) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
| AT3G51850
| PredictedPhylogenetic profile method | FSW = 0.3925
| Class C:plasma membrane | CPK13 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
| AT3G09820
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2353
| Class C:plasma membrane | ADK1 (ADENOSINE KINASE 1) ADENOSINE KINASE/ COPPER ION BINDING |
| AT4G23650
| PredictedPhylogenetic profile method | FSW = 0.3145
| Class C:plasma membrane | CDPK6 (CALCIUM-DEPENDENT PROTEIN KINASE 6) ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
| AT1G35670
| PredictedPhylogenetic profile method | FSW = 0.2358
| Class C:plasma membrane | ATCDPK2 (CALCIUM-DEPENDENT PROTEIN KINASE 2) CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE |
| AT1G74740
| PredictedPhylogenetic profile method | FSW = 0.3019
| Class C:plasma membrane | CPK30 (CALCIUM-DEPENDENT PROTEIN KINASE 30) CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE |
| AT4G36490
| PredictedAffinity Capture-MS | FSW = 0.0180
| Class C:plasma membrane | SFH12 (SEC14-LIKE 12) PHOSPHATIDYLINOSITOL TRANSPORTER/ TRANSPORTER |
| AT4G08690
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2602
| Class C:plasma membrane | SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLYCERIDE TRANSFER FAMILY PROTEIN |
| AT1G61950
| PredictedPhylogenetic profile method | FSW = 0.3664
| Class C:plasma membrane | CPK19 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
| AT5G66210
| PredictedPhylogenetic profile method | FSW = 0.3431
| Class C:plasma membrane | CPK28 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
| AT2G17890
| PredictedPhylogenetic profile method | FSW = 0.3682
| Class C:plasma membrane | CPK16 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
| AT3G25800
| PredictedAffinity Capture-MS | FSW = 0.0990
| Class C:plasma membrane | PP2AA2 (PROTEIN PHOSPHATASE 2A SUBUNIT A2) PROTEIN PHOSPHATASE TYPE 2A REGULATOR |
| AT3G57530
| PredictedPhylogenetic profile method | FSW = 0.2695
| Class C:plasma membrane | CPK32 (CALCIUM-DEPENDENT PROTEIN KINASE 32) CALCIUM-DEPENDENT PROTEIN KINASE C/ CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING |
| AT5G19450
| PredictedPhylogenetic profile method | FSW = 0.2794
| Class C:plasma membrane | CDPK19 (CALCIUM-DEPENDENT PROTEIN KINASE 19) ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
| AT5G12480
| PredictedPhylogenetic profile method | FSW = 0.1506
| Class C:plasma membrane | CPK7 (CALMODULIN-DOMAIN PROTEIN KINASE 7) ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
| AT4G18800
| PredictedAffinity Capture-MS | FSW = 0.0119
| Class C:plasma membrane | ATRABA1D (ARABIDOPSIS RAB GTPASE HOMOLOG A1D) GTP BINDING |
| AT5G45380
| PredictedAffinity Capture-MS | FSW = 0.3307
| Class C:plasma membrane | SODIUMSOLUTE SYMPORTER FAMILY PROTEIN |
| AT1G14010
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2747
| Unknown | EMP24/GP25L/P24 FAMILY PROTEIN |
| AT3G49360
| PredictedSynthetic Rescue | FSW = 0.0238
| Unknown | GLUCOSAMINE/GALACTOSAMINE-6-PHOSPHATE ISOMERASE FAMILY PROTEIN |
| AT1G51040
| PredictedSynthetic Lethality | FSW = 0.0514
| Unknown | PHOSPHATIDYLINOSITOL 4-KINASE PUTATIVE |
| AT3G11630
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0182
| Unknown | 2-CYS PEROXIREDOXIN CHLOROPLAST (BAS1) |
| AT1G31190
| PredictedAffinity Capture-MSAffinity Capture-MSSynthetic LethalityAffinity Capture-MS | FSW = 0.2806
| Unknown | IMPL1 (MYO-INOSITOL MONOPHOSPHATASE LIKE 1) 3(2)5-BISPHOSPHATE NUCLEOTIDASE/ INOSITOL OR PHOSPHATIDYLINOSITOL PHOSPHATASE/ INOSITOL-1(OR 4)-MONOPHOSPHATASE |
| AT4G23430
| PredictedSynthetic Lethality | FSW = 0.0125
| Unknown | SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN |
| AT5G49030
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MStwo hybrid | FSW = 0.3182
| Unknown | OVA2 (OVULE ABORTION 2) ATP BINDING / AMINOACYL-TRNA LIGASE/ CATALYTIC/ ISOLEUCINE-TRNA LIGASE/ NUCLEOTIDE BINDING |
| AT1G18870
| PredictedAffinity Capture-MS | FSW = 0.2084
| Unknown | ICS2 (ISOCHORISMATE SYNTHASE 2) ISOCHORISMATE SYNTHASE |
| AT1G70580
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSSynthetic Lethality | FSW = 0.1271
| Unknown | AOAT2 (ALANINE-2-OXOGLUTARATE AMINOTRANSFERASE 2) L-ALANINE2-OXOGLUTARATE AMINOTRANSFERASE/ GLYCINE2-OXOGLUTARATE AMINOTRANSFERASE |
| AT1G48130
| PredictedAffinity Capture-MS | FSW = 0.0418
| Unknown | ATPER1 ANTIOXIDANT/ THIOREDOXIN PEROXIDASE |
| AT4G09570
| PredictedPhylogenetic profile method | FSW = 0.1852
| Unknown | CPK4 CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE |
| AT4G14340
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2290
| Unknown | CKI1 (CASEIN KINASE I) KINASE/ PROTEIN SERINE/THREONINE KINASE |
| AT5G59960
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSSynthetic Lethality | FSW = 0.3620
| Unknown | UNKNOWN PROTEIN |
| AT4G26600
| PredictedSynthetic Lethality | FSW = 0.0351
| Unknown | NUCLEOLAR PROTEIN PUTATIVE |
| AT4G01850
| PredictedSynthetic Rescue | FSW = 0.0150
| Unknown | SAM-2 (S-ADENOSYLMETHIONINE SYNTHETASE 2) COPPER ION BINDING / METHIONINE ADENOSYLTRANSFERASE |
| AT1G30810
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2848
| Unknown | TRANSCRIPTION FACTOR |
| AT2G38880
| PredictedAffinity Capture-MS | FSW = 0.0348
| Unknown | NF-YB1 (NUCLEAR FACTOR Y SUBUNIT B1) TRANSCRIPTION FACTOR |
| AT3G66656
| PredictedAffinity Capture-MS | FSW = 0.0540
| Unknown | AGL91 TRANSCRIPTION FACTOR |
| AT2G17130
| PredictedAffinity Capture-MS | FSW = 0.0296
| Unknown | IDH2 (ISOCITRATE DEHYDROGENASE SUBUNIT 2) ISOCITRATE DEHYDROGENASE (NAD+)/ OXIDOREDUCTASE ACTING ON THE CH-OH GROUP OF DONORS NAD OR NADP AS ACCEPTOR |
| AT2G19980
| PredictedAffinity Capture-MS | FSW = 0.0564
| Unknown | ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN |
| AT3G54300
| PredictedAffinity Capture-MS | FSW = 0.0969
| Unknown | ATVAMP727 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 727) |
| AT3G45280
| PredictedAffinity Capture-MS | FSW = 0.0263
| Unknown | SYP72 (SYNTAXIN OF PLANTS 72) PROTEIN TRANSPORTER |
| AT1G50110
| PredictedAffinity Capture-MS | FSW = 0.0126
| Unknown | BRANCHED-CHAIN AMINO ACID AMINOTRANSFERASE 6 / BRANCHED-CHAIN AMINO ACID TRANSAMINASE 6 (BCAT6) |
| AT4G17190
| PredictedAffinity Capture-MS | FSW = 0.1030
| Unknown | FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) DIMETHYLALLYLTRANSTRANSFERASE/ GERANYLTRANSTRANSFERASE |
| AT1G02730
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2525
| Unknown | ATCSLD5 14-BETA-D-XYLAN SYNTHASE/ CELLULOSE SYNTHASE |
| AT1G06790
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1992
| Unknown | RNA POLYMERASE RPB7 N-TERMINAL DOMAIN-CONTAINING PROTEIN |
| AT1G10350
| PredictedAffinity Capture-MS | FSW = 0.1701
| Unknown | DNAJ HEAT SHOCK PROTEIN PUTATIVE |
| AT1G10940
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2351
| Unknown | SNRK24 (SNF1-RELATED PROTEIN KINASE 24) KINASE |
| AT1G22290
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0423
| Unknown | 14-3-3 PROTEIN GF14 PUTATIVE (GRF10) |
| AT1G30580
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0458
| Unknown | GTP BINDING |
| AT1G31300
| PredictedAffinity Capture-MS | FSW = 0.0140
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN INTEGRAL TO MEMBRANE EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TRAM LAG1 AND CLN8 HOMOLOGY (INTERPROIPR006634) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT4G196452) HAS 478 BLAST HITS TO 478 PROTEINS IN 104 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 269 FUNGI - 98 PLANTS - 80 VIRUSES - 0 OTHER EUKARYOTES - 31 (SOURCE NCBI BLINK) |
| AT1G34460 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0768
| Unknown | CYCB15 (CYCLIN B15) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
| AT1G72680
| PredictedSynthetic Lethality | FSW = 0.0229
| Unknown | CINNAMYL-ALCOHOL DEHYDROGENASE PUTATIVE |
| AT2G20410
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3079
| Unknown | ACTIVATING SIGNAL COINTEGRATOR-RELATED |
| AT2G29940
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3080
| Unknown | PDR3 (PLEIOTROPIC DRUG RESISTANCE 3) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
| AT2G37670
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0843
| Unknown | WD-40 REPEAT FAMILY PROTEIN |
| AT2G46230
| PredictedAffinity Capture-MS | FSW = 0.0274
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PROTEIN OF UNKNOWN FUNCTION DUF652 (INTERPROIPR006984) NUCLEOTIDE BINDING PROTEIN PINC (INTERPROIPR006596) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G265301) HAS 493 BLAST HITS TO 493 PROTEINS IN 165 SPECIES ARCHAE - 21 BACTERIA - 0 METAZOA - 192 FUNGI - 143 PLANTS - 53 VIRUSES - 0 OTHER EUKARYOTES - 84 (SOURCE NCBI BLINK) |
| AT3G02000
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0582
| Unknown | ROXY1 DISULFIDE OXIDOREDUCTASE |
| AT3G05760
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2524
| Unknown | NUCLEIC ACID BINDING / ZINC ION BINDING |
| AT3G15470
| PredictedSynthetic Lethality | FSW = 0.0274
| Unknown | WD-40 REPEAT FAMILY PROTEIN |
| AT3G53880
| PredictedAffinity Capture-MS | FSW = 0.2303
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
| AT3G54630
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSSynthetic Lethality | FSW = 0.2396
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 11 PLANT STRUCTURES EXPRESSED DURING 6 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S KINETOCHORE PROTEIN NDC80 (INTERPROIPR005550) HAS 19800 BLAST HITS TO 12108 PROTEINS IN 845 SPECIES ARCHAE - 345 BACTERIA - 1709 METAZOA - 11031 FUNGI - 1499 PLANTS - 797 VIRUSES - 39 OTHER EUKARYOTES - 4380 (SOURCE NCBI BLINK) |
| AT1G66740
| PredictedAffinity Capture-MS | FSW = 0.0061
| Unknown | SGA2 |
| AT2G31060
| PredictedAffinity Capture-MS | FSW = 0.2855
| Unknown | ELONGATION FACTOR FAMILY PROTEIN |
| AT2G47760
| PredictedAffinity Capture-MS | FSW = 0.0548
| Unknown | ALG3 ALPHA-13-MANNOSYLTRANSFERASE/ CATALYTIC |
| AT5G06150
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1019
| Unknown | CYC1BAT CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
| AT5G14060
| PredictedAffinity Capture-MS | FSW = 0.0141
| Unknown | CARAB-AK-LYS AMINO ACID BINDING / ASPARTATE KINASE |
| AT5G16040
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0353
| Unknown | REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN |
| AT5G16140
| PredictedSynthetic Rescue | FSW = 0.0120
| Unknown | PEPTIDYL-TRNA HYDROLASE FAMILY PROTEIN |
| AT5G16960
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2358
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
| AT5G53940
| PredictedSynthetic Rescue | FSW = 0.0070
| Unknown | YIPPEE FAMILY PROTEIN |
| AT4G31985
| PredictedAffinity Capture-MS | FSW = 0.2092
| Unknown | 60S RIBOSOMAL PROTEIN L39 (RPL39C) |
| AT5G13860
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0320
| Unknown | ELC-LIKE (ELCH-LIKE) SMALL CONJUGATING PROTEIN LIGASE |
| AT5G15070
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0379
| Unknown | ACID PHOSPHATASE/ OXIDOREDUCTASE/ TRANSITION METAL ION BINDING |
| AT5G19360
| PredictedPhylogenetic profile method | FSW = 0.2576
| Unknown | CPK34 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
| AT5G23580
| PredictedPhylogenetic profile method | FSW = 0.3510
| Unknown | CDPK9 (CALMODULIN-LIKE DOMAIN PROTEIN KINASE 9) ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
| AT4G21940
| PredictedPhylogenetic profile method | FSW = 0.0921
| Unknown | CPK15 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
| AT4G04695
| PredictedPhylogenetic profile method | FSW = 0.1970
| Unknown | CPK31 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
| AT1G50700
| PredictedPhylogenetic profile method | FSW = 0.3747
| Unknown | CPK33 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
| AT2G41860
| PredictedPhylogenetic profile method | FSW = 0.2903
| Unknown | CPK14 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
| AT4G36070
| PredictedPhylogenetic profile method | FSW = 0.2734
| Unknown | CPK18 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
| AT4G04700
| PredictedPhylogenetic profile method | FSW = 0.1737
| Unknown | CPK27 ATP BINDING / CALCIUM ION BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
| AT5G12180
| PredictedPhylogenetic profile method | FSW = 0.3774
| Unknown | CPK17 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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