Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G08690 - ( SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein )
37 Proteins interacs with AT4G08690Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G22180 | PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.0842
| Class C:plasma membranecytosol | SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLYCERIDE TRANSFER FAMILY PROTEIN |
AT3G01280 | PredictedAffinity Capture-MS | FSW = 0.3378
| Class C:plasma membrane | VDAC1 (VOLTAGE DEPENDENT ANION CHANNEL 1) VOLTAGE-GATED ANION CHANNEL |
AT3G09820 | PredictedAffinity Capture-MSCo-purificationAffinity Capture-MSCo-purification | FSW = 0.5573
| Class C:plasma membrane | ADK1 (ADENOSINE KINASE 1) ADENOSINE KINASE/ COPPER ION BINDING |
AT1G11680 | PredictedSynthetic Lethality | FSW = 0.0184
| Class C:plasma membrane | CYP51G1 (CYTOCHROME P450 51G1) OXYGEN BINDING / STEROL 14-DEMETHYLASE |
AT4G04720 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2602
| Class C:plasma membrane | CPK21 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT1G63110 | PredictedAffinity Capture-RNA | FSW = 0.2645
| Class C:plasma membrane | CELL DIVISION CYCLE PROTEIN-RELATED |
AT5G45380 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.6335
| Class C:plasma membrane | SODIUMSOLUTE SYMPORTER FAMILY PROTEIN |
AT3G46900 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3613
| Class C:plasma membrane | COPT2 COPPER ION TRANSMEMBRANE TRANSPORTER/ HIGH AFFINITY COPPER ION TRANSMEMBRANE TRANSPORTER |
AT4G14340 | PredictedAffinity Capture-MS | FSW = 0.3354
| Class C:cytosol | CKI1 (CASEIN KINASE I) KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT1G14010 | PredictedAffinity Capture-MS | FSW = 0.5341
| Unknown | EMP24/GP25L/P24 FAMILY PROTEIN |
AT5G26030 | Predictedtwo hybrid | FSW = 0.0142
| Unknown | FC1 (FERROCHELATASE 1) FERROCHELATASE |
AT3G54660 | PredictedAffinity Capture-MS | FSW = 0.1970
| Unknown | GR (GLUTATHIONE REDUCTASE) ATP BINDING / GLUTATHIONE-DISULFIDE REDUCTASE |
AT5G15450 | PredictedAffinity Capture-RNA | FSW = 0.0823
| Unknown | CLPB3 (CASEIN LYTIC PROTEINASE B3) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT1G31190 | PredictedAffinity Capture-MS | FSW = 0.3291
| Unknown | IMPL1 (MYO-INOSITOL MONOPHOSPHATASE LIKE 1) 3(2)5-BISPHOSPHATE NUCLEOTIDASE/ INOSITOL OR PHOSPHATIDYLINOSITOL PHOSPHATASE/ INOSITOL-1(OR 4)-MONOPHOSPHATASE |
AT5G59960 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.6252
| Unknown | UNKNOWN PROTEIN |
AT3G08980 | PredictedAffinity Capture-MS | FSW = 0.5337
| Unknown | SIGNAL PEPTIDASE I FAMILY PROTEIN |
AT2G38960 | PredictedAffinity Capture-MS | FSW = 0.2678
| Unknown | AERO2 (ARABIDOPSIS ENDOPLASMIC RETICULUM OXIDOREDUCTINS 2) FAD BINDING / ELECTRON CARRIER/ OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS DISULFIDE AS ACCEPTOR / PROTEIN BINDING |
AT1G10940 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3718
| Unknown | SNRK24 (SNF1-RELATED PROTEIN KINASE 24) KINASE |
AT1G27080 | PredictedAffinity Capture-MS | FSW = 0.2245
| Unknown | NRT16 (NITRATE TRANSPORTER 16) LOW AFFINITY NITRATE TRANSMEMBRANE TRANSPORTER/ TRANSPORTER |
AT1G43860 | PredictedAffinity Capture-MS | FSW = 0.0635
| Unknown | TRANSCRIPTION FACTOR |
AT1G59580 | PredictedAffinity Capture-MS | FSW = 0.0711
| Unknown | ATMPK2 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE HOMOLOG 2) MAP KINASE/ KINASE/ PROTEIN KINASE |
AT1G74250 | PredictedAffinity Capture-MS | FSW = 0.4180
| Unknown | DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN |
AT2G29680 | PredictedAffinity Capture-MS | FSW = 0.4271
| Unknown | CDC6 (CELL DIVISION CONTROL 6) |
AT2G29940 | PredictedAffinity Capture-MStwo hybridtwo hybridAffinity Capture-MS | FSW = 0.6878
| Unknown | PDR3 (PLEIOTROPIC DRUG RESISTANCE 3) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
AT3G05760 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4974
| Unknown | NUCLEIC ACID BINDING / ZINC ION BINDING |
AT3G53880 | PredictedAffinity Capture-MSAffinity Capture-MSCo-purification | FSW = 0.4501
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
AT3G54630 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3214
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 11 PLANT STRUCTURES EXPRESSED DURING 6 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S KINETOCHORE PROTEIN NDC80 (INTERPROIPR005550) HAS 19800 BLAST HITS TO 12108 PROTEINS IN 845 SPECIES ARCHAE - 345 BACTERIA - 1709 METAZOA - 11031 FUNGI - 1499 PLANTS - 797 VIRUSES - 39 OTHER EUKARYOTES - 4380 (SOURCE NCBI BLINK) |
AT1G02730 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2917
| Unknown | ATCSLD5 14-BETA-D-XYLAN SYNTHASE/ CELLULOSE SYNTHASE |
AT1G06790 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4722
| Unknown | RNA POLYMERASE RPB7 N-TERMINAL DOMAIN-CONTAINING PROTEIN |
AT1G10350 | PredictedAffinity Capture-MStwo hybridtwo hybridAffinity Capture-MS | FSW = 0.5091
| Unknown | DNAJ HEAT SHOCK PROTEIN PUTATIVE |
AT1G18550 | PredictedAffinity Capture-MS | FSW = 0.2976
| Unknown | ATP BINDING / MICROTUBULE MOTOR |
AT2G20410 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.5743
| Unknown | ACTIVATING SIGNAL COINTEGRATOR-RELATED |
AT2G31060 | PredictedAffinity Capture-MS | FSW = 0.4530
| Unknown | ELONGATION FACTOR FAMILY PROTEIN |
AT4G29910 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3987
| Unknown | ORC5 (ORIGIN RECOGNITION COMPLEX PROTEIN 5) PROTEIN BINDING |
AT4G31770 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4676
| Unknown | CALCINEURIN-LIKE PHOSPHOESTERASE FAMILY PROTEIN |
AT5G16960 | PredictedAffinity Capture-MS | FSW = 0.5177
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
AT1G22240 | Predictedinteraction prediction | FSW = 0.0282
| Unknown | APUM8 (ARABIDOPSIS PUMILIO 8) RNA BINDING / BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454