Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G14340 - ( CKI1 (CASEIN KINASE I) kinase/ protein serine/threonine kinase )
50 Proteins interacs with AT4G14340Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G02680 | Experimentalprotein array | FSW = 0.0092
| Class A:nucleusClass B:cytosol | TAF13 (TBP-ASSOCIATED FACTOR 13) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR |
AT3G29350 | Experimentaltwo hybrid | FSW = 0.0215
| Class A:cytosolClass B:nucleusClass D:nucleus (p = 0.78) | AHP2 (HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 2) HISTIDINE PHOSPHOTRANSFER KINASE/ PROTEIN BINDING / SIGNAL TRANSDUCER |
AT3G43810 | Experimentalprotein array | FSW = 0.0151
| Class B:plasma membranenucleuscytosolClass D:nucleus (p = 0.78) | CAM7 (CALMODULIN 7) CALCIUM ION BINDING |
AT1G66410 | Experimentalprotein array | FSW = 0.0169
| Class B:plasma membranenucleuscytosolClass D:nucleus (p = 0.78) | CAM4 (CALMODULIN 4) CALCIUM ION BINDING / SIGNAL TRANSDUCER |
AT5G39670 | Experimentalprotein array | FSW = 0.1669
| Unknown | CALCIUM-BINDING EF HAND FAMILY PROTEIN |
AT4G14640 | Experimentalprotein array | FSW = 0.0275
| Unknown | CAM8 (CALMODULIN 8) CALCIUM ION BINDING |
AT5G21274 | Experimentalprotein array | FSW = 0.0213
| Unknown | CAM6 (CALMODULIN 6) CALCIUM ION BINDING |
AT3G51920 | Experimentalprotein array | FSW = 0.0230
| Unknown | CAM9 (CALMODULIN 9) CALCIUM ION BINDING |
AT2G41090 | Experimentalprotein array | FSW = 0.0067
| Unknown | CALMODULIN-LIKE CALCIUM-BINDING PROTEIN 22 KDA (CABP-22) |
AT3G21510 | Experimentaltwo hybrid | FSW = 0.0267
| Unknown | AHP1 (HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 1) HISTIDINE PHOSPHOTRANSFER KINASE |
AT4G28860 | PredictedPhylogenetic profile method | FSW = 0.0171
| Class C:nucleuscytosol | CKL4 (CASEIN KINASE I-LIKE 4) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT4G28880 | PredictedPhylogenetic profile method | FSW = 0.0556
| Class C:nucleuscytosol | CKL3 (CASEIN KINASE I-LIKE 3) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT1G72730 | PredictedAffinity Capture-MS | FSW = 0.1372
| Class C:nucleus | EUKARYOTIC TRANSLATION INITIATION FACTOR 4A PUTATIVE / EIF-4A PUTATIVE |
AT1G07790 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1675
| Class C:nucleus | HTB1 DNA BINDING |
AT5G62880 | PredictedAffinity Capture-MS | FSW = 0.0269
| Class C:nucleus | ARAC10 GTP BINDING |
AT5G59960 | PredictedAffinity Capture-MS | FSW = 0.3789
| Class C:nucleus | UNKNOWN PROTEIN |
AT3G18600 | Predictedtwo hybridtwo hybridtwo hybrid | FSW = 0.0039
| Class C:nucleus | DEAD/DEAH BOX HELICASE PUTATIVE |
AT1G30810 | PredictedAffinity Capture-MS | FSW = 0.3683
| Class C:nucleus | TRANSCRIPTION FACTOR |
AT4G08690 | PredictedAffinity Capture-MS | FSW = 0.3354
| Class C:cytosol | SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLYCERIDE TRANSFER FAMILY PROTEIN |
AT3G01280 | PredictedAffinity Capture-MS | FSW = 0.2623
| Unknown | VDAC1 (VOLTAGE DEPENDENT ANION CHANNEL 1) VOLTAGE-GATED ANION CHANNEL |
AT4G17730 | PredictedAffinity Capture-MS | FSW = 0.0554
| Unknown | SYP23 (SYNTAXIN OF PLANTS 23) SNAP RECEPTOR |
AT1G14010 | PredictedAffinity Capture-MS | FSW = 0.4012
| Unknown | EMP24/GP25L/P24 FAMILY PROTEIN |
AT3G09820 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3859
| Unknown | ADK1 (ADENOSINE KINASE 1) ADENOSINE KINASE/ COPPER ION BINDING |
AT1G18870 | PredictedAffinity Capture-MS | FSW = 0.3126
| Unknown | ICS2 (ISOCHORISMATE SYNTHASE 2) ISOCHORISMATE SYNTHASE |
AT3G25800 | PredictedAffinity Capture-MSAffinity Capture-MSReconstituted Complextwo hybridtwo hybridAffinity Capture-MSAffinity Capture-MStwo hybridAffinity Capture-MS | FSW = 0.2538
| Unknown | PP2AA2 (PROTEIN PHOSPHATASE 2A SUBUNIT A2) PROTEIN PHOSPHATASE TYPE 2A REGULATOR |
AT4G04720 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2290
| Unknown | CPK21 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G45380 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4811
| Unknown | SODIUMSOLUTE SYMPORTER FAMILY PROTEIN |
AT3G08980 | PredictedAffinity Capture-MS | FSW = 0.4144
| Unknown | SIGNAL PEPTIDASE I FAMILY PROTEIN |
AT3G55605 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2115
| Unknown | MITOCHONDRIAL GLYCOPROTEIN FAMILY PROTEIN / MAM33 FAMILY PROTEIN |
AT3G54300 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2566
| Unknown | ATVAMP727 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 727) |
AT2G38960 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3399
| Unknown | AERO2 (ARABIDOPSIS ENDOPLASMIC RETICULUM OXIDOREDUCTINS 2) FAD BINDING / ELECTRON CARRIER/ OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS DISULFIDE AS ACCEPTOR / PROTEIN BINDING |
AT4G17190 | PredictedAffinity Capture-MS | FSW = 0.0664
| Unknown | FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) DIMETHYLALLYLTRANSTRANSFERASE/ GERANYLTRANSTRANSFERASE |
AT1G27080 | PredictedAffinity Capture-MS | FSW = 0.1774
| Unknown | NRT16 (NITRATE TRANSPORTER 16) LOW AFFINITY NITRATE TRANSMEMBRANE TRANSPORTER/ TRANSPORTER |
AT1G33040 | PredictedAffinity Capture-MS | FSW = 0.0059
| Unknown | NACA5 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 5) |
AT1G59580 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0789
| Unknown | ATMPK2 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE HOMOLOG 2) MAP KINASE/ KINASE/ PROTEIN KINASE |
AT2G03690 | PredictedAffinity Capture-MS | FSW = 0.0097
| Unknown | COENZYME Q BIOSYNTHESIS COQ4 FAMILY PROTEIN / UBIQUINONE BIOSYNTHESIS COQ4 FAMILY PROTEIN |
AT2G20410 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3817
| Unknown | ACTIVATING SIGNAL COINTEGRATOR-RELATED |
AT2G29940 | PredictedAffinity Capture-MS | FSW = 0.3274
| Unknown | PDR3 (PLEIOTROPIC DRUG RESISTANCE 3) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
AT2G31060 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MStwo hybrid | FSW = 0.5192
| Unknown | ELONGATION FACTOR FAMILY PROTEIN |
AT3G05760 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2575
| Unknown | NUCLEIC ACID BINDING / ZINC ION BINDING |
AT3G24090 | Predictedtwo hybrid | FSW = 0.0104
| Unknown | GLUTAMINE-FRUCTOSE-6-PHOSPHATE TRANSAMINASE (ISOMERIZING)/ SUGAR BINDING / TRANSAMINASE |
AT3G53880 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-purification | FSW = 0.3311
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
AT4G04210 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0041
| Unknown | PUX4 PROTEIN BINDING |
AT4G31985 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4045
| Unknown | 60S RIBOSOMAL PROTEIN L39 (RPL39C) |
AT5G03030 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2851
| Unknown | DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN |
AT5G16960 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3769
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
AT5G59890 | PredictedAffinity Capture-MS | FSW = 0.2267
| Unknown | ADF4 (ACTIN DEPOLYMERIZING FACTOR 4) ACTIN BINDING |
AT5G13150 | PredictedAffinity Capture-MS | FSW = 0.0171
| Unknown | ATEXO70C1 (EXOCYST SUBUNIT EXO70 FAMILY PROTEIN C1) PROTEIN BINDING |
AT5G15500 | PredictedEnriched domain pairGene fusion method | FSW = 0.0606
| Unknown | ANKYRIN REPEAT FAMILY PROTEIN |
AT4G33270 | PredictedGene fusion method | FSW = 0.0222
| Unknown | CDC201 SIGNAL TRANSDUCER |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454