Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Find locus: show subcellular location show Ontology

Export PPI as  



AtPIN will be upgraded. Please send your suggestions here

AT1G07790 - ( HTB1 DNA binding )

57 Proteins interacs with AT1G07790
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G15090

Predicted

Synthetic Lethality

FSW = 0.0079

Class C:

plastid

nucleus

VDAC3 (VOLTAGE DEPENDENT ANION CHANNEL 3) VOLTAGE-GATED ANION CHANNEL
AT1G07660Predicted

Affinity Capture-MS

FSW = 0.1369

Class C:

plastid

HISTONE H4
AT3G03780

Predicted

Affinity Capture-MS

FSW = 0.0169

Class C:

plastid

ATMS2 5-METHYLTETRAHYDROPTEROYLTRIGLUTAMATE-HOMOCYSTEINE S-METHYLTRANSFERASE/ METHIONINE SYNTHASE
AT3G09820

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1221

Class C:

plastid

ADK1 (ADENOSINE KINASE 1) ADENOSINE KINASE/ COPPER ION BINDING
AT1G80030

Predicted

Synthetic Lethality

FSW = 0.0191

Class C:

plastid

DNAJ HEAT SHOCK PROTEIN PUTATIVE
AT1G03475

Predicted

Affinity Capture-MS

FSW = 0.0756

Class C:

plastid

LIN2 (LESION INITIATION 2) COPROPORPHYRINOGEN OXIDASE
AT4G23430

Predicted

Synthetic Lethality

FSW = 0.0031

Class C:

plastid

SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN
AT1G72730

Predicted

Affinity Capture-MS

FSW = 0.0935

Class C:

nucleus

EUKARYOTIC TRANSLATION INITIATION FACTOR 4A PUTATIVE / EIF-4A PUTATIVE
AT2G06510

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.0336

Class C:

nucleus

RPA1A (REPLICATION PROTEIN A 1A) DNA BINDING / NUCLEIC ACID BINDING
AT5G62880

Predicted

Affinity Capture-MS

FSW = 0.0171

Class C:

nucleus

ARAC10 GTP BINDING
AT4G14340

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1675

Class C:

nucleus

CKI1 (CASEIN KINASE I) KINASE/ PROTEIN SERINE/THREONINE KINASE
AT4G26720

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0164

Class C:

nucleus

PPX1 (PROTEIN PHOSPHATASE X 1) PROTEIN SERINE/THREONINE PHOSPHATASE
AT3G54610

Predicted

biochemical

Co-expression

FSW = 0.0709

Class C:

nucleus

GCN5 DNA BINDING / H3 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE
AT3G54280

Predicted

Affinity Capture-MS

FSW = 0.0718

Class C:

nucleus

RGD3 (ROOT GROWTH DEFECTIVE 3) ATP BINDING / DNA BINDING / BINDING / HELICASE/ NUCLEIC ACID BINDING
AT4G10670

Predicted

Affinity Capture-MS

FSW = 0.1228

Class C:

nucleus

GTC2
AT3G16810

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.0124

Class C:

nucleus

APUM24 (ARABIDOPSIS PUMILIO 24) RNA BINDING / BINDING
AT3G57300

Predicted

Affinity Capture-MS

FSW = 0.0806

Class C:

nucleus

INO80 (INO80 ORTHOLOG) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING
AT1G05120

Predicted

Affinity Capture-MS

FSW = 0.0311

Class C:

nucleus

SNF2 DOMAIN-CONTAINING PROTEIN / HELICASE DOMAIN-CONTAINING PROTEIN / RING FINGER DOMAIN-CONTAINING PROTEIN
AT1G55520

Predicted

Affinity Capture-MS

FSW = 0.0585

Class C:

nucleus

TBP2 (TATA BINDING PROTEIN 2) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ TATA-BINDING PROTEIN BINDING
AT3G06400

Predicted

Affinity Capture-MS

FSW = 0.0174

Class C:

nucleus

CHR11 (CHROMATIN-REMODELING PROTEIN 11) ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ HELICASE/ HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING / NUCLEOSOME BINDING
AT1G14010

Predicted

Affinity Capture-MS

FSW = 0.1032

Unknown

EMP24/GP25L/P24 FAMILY PROTEIN
AT3G25800

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1556

Unknown

PP2AA2 (PROTEIN PHOSPHATASE 2A SUBUNIT A2) PROTEIN PHOSPHATASE TYPE 2A REGULATOR
AT1G73180

Predicted

Affinity Capture-MS

FSW = 0.0111

Unknown

EUKARYOTIC TRANSLATION INITIATION FACTOR-RELATED
AT2G19480

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1110

Unknown

NAP12 (NUCLEOSOME ASSEMBLY PROTEIN 12) DNA BINDING
AT3G08980

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1323

Unknown

SIGNAL PEPTIDASE I FAMILY PROTEIN
AT3G54300

Predicted

Affinity Capture-MS

FSW = 0.1151

Unknown

ATVAMP727 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 727)
AT2G38960

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0992

Unknown

AERO2 (ARABIDOPSIS ENDOPLASMIC RETICULUM OXIDOREDUCTINS 2) FAD BINDING / ELECTRON CARRIER/ OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS DISULFIDE AS ACCEPTOR / PROTEIN BINDING
AT3G23890

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.0680

Unknown

TOPII (TOPOISOMERASE II) ATP BINDING / DNA BINDING / DNA TOPOISOMERASE (ATP-HYDROLYZING)/ DNA TOPOISOMERASE/ DNA-DEPENDENT ATPASE
AT3G28730

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.0962

Unknown

ATHMG (ARABIDOPSIS THALIANA HIGH MOBILITY GROUP) TRANSCRIPTION FACTOR
AT2G37560

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.0220

Unknown

ORC2 (ORIGIN RECOGNITION COMPLEX SECOND LARGEST SUBUNIT 2) DNA REPLICATION ORIGIN BINDING / PROTEIN BINDING
AT2G16740

Predicted

Synthetic Lethality

FSW = 0.0034

Unknown

UBC29 (UBIQUITIN-CONJUGATING ENZYME 29) UBIQUITIN-PROTEIN LIGASE
AT2G20410

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1205

Unknown

ACTIVATING SIGNAL COINTEGRATOR-RELATED
AT4G31985

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2116

Unknown

60S RIBOSOMAL PROTEIN L39 (RPL39C)
AT2G31060

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1846

Unknown

ELONGATION FACTOR FAMILY PROTEIN
AT3G53880

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0972

Unknown

ALDO/KETO REDUCTASE FAMILY PROTEIN
AT5G56740

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.0450

Unknown

HAG2 (HISTONE ACETYLTRANSFERASE OF THE GNAT FAMILY 2) H4 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE
AT3G09670

Predicted

Affinity Capture-MS

FSW = 0.0281

Unknown

PWWP DOMAIN-CONTAINING PROTEIN
AT3G06670

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0407

Unknown

BINDING
AT2G22425

Predicted

Affinity Capture-MS

FSW = 0.0137

Unknown

PEPTIDASE
AT1G09200Predicted

Affinity Capture-MS

Co-expression

FSW = 0.1601

Unknown

HISTONE H3
AT1G08880

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.2124

Unknown

H2AXA DNA BINDING
AT1G26170Predicted

Affinity Capture-MS

Affinity Capture-MS

Co-expression

FSW = 0.0978

Unknown

BINDING / PROTEIN TRANSPORTER
AT1G52740

Predicted

Affinity Capture-MS

FSW = 0.0524

Unknown

HTA9 (HISTONE H2A PROTEIN 9) DNA BINDING
AT1G80710

Predicted

Affinity Capture-MS

FSW = 0.0234

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT2G26830

Predicted

Affinity Capture-MS

FSW = 0.0140

Unknown

EMB1187 (EMBRYO DEFECTIVE 1187) KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR
AT1G04950

Predicted

Affinity Capture-MS

FSW = 0.0524

Unknown

TAF6 (TBP-ASSOCIATED FACTOR 6) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ TRANSCRIPTION INITIATION FACTOR
AT5G01720

Predicted

Affinity Capture-MS

FSW = 0.0076

Unknown

F-BOX FAMILY PROTEIN (FBL3)
AT3G05090

Predicted

Affinity Capture-MS

FSW = 0.0133

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT2G36930

Predicted

Affinity Capture-MS

FSW = 0.0126

Unknown

ZINC FINGER (C2H2 TYPE) FAMILY PROTEIN
AT2G23080

Predicted

Affinity Capture-MS

FSW = 0.0613

Unknown

CASEIN KINASE II ALPHA CHAIN PUTATIVE
AT1G19480

Predicted

Affinity Capture-MS

FSW = 0.0449

Unknown

HHH-GPD BASE EXCISION DNA REPAIR FAMILY PROTEIN
AT5G22110

Predicted

Affinity Capture-MS

FSW = 0.0224

Unknown

ATDPB2 (ARABIDOPSIS THALIANA DNA POLYMERASE EPSILON SUBUNIT B2) DNA BINDING / DNA-DIRECTED DNA POLYMERASE/ NUCLEIC ACID BINDING
AT1G08260

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.0363

Unknown

TIL1 (TILTED 1) DNA BINDING / DNA-DIRECTED DNA POLYMERASE/ NUCLEIC ACID BINDING / NUCLEOTIDE BINDING / ZINC ION BINDING
AT5G45140

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.0735

Unknown

NRPC2 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ RIBONUCLEOSIDE BINDING
AT1G29940Predicted

Affinity Capture-MS

Co-expression

FSW = 0.0095

Unknown

NRPA2 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ RIBONUCLEOSIDE BINDING
AT5G60040

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.0279

Unknown

NRPC1 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ RIBONUCLEOSIDE BINDING / ZINC ION BINDING
AT5G55300

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.0361

Unknown

TOP1ALPHA (DNA TOPOISOMERASE I ALPHA) DNA TOPOISOMERASE TYPE I

Downloads

Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454