Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G07790 - ( HTB1 DNA binding )
57 Proteins interacs with AT1G07790| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT5G15090
   | PredictedSynthetic Lethality | FSW = 0.0079
| Class C:plastidnucleus | VDAC3 (VOLTAGE DEPENDENT ANION CHANNEL 3) VOLTAGE-GATED ANION CHANNEL |
| AT1G07660 | PredictedAffinity Capture-MS | FSW = 0.1369
| Class C:plastid | HISTONE H4 |
| AT3G03780
| PredictedAffinity Capture-MS | FSW = 0.0169
| Class C:plastid | ATMS2 5-METHYLTETRAHYDROPTEROYLTRIGLUTAMATE-HOMOCYSTEINE S-METHYLTRANSFERASE/ METHIONINE SYNTHASE |
| AT3G09820
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1221
| Class C:plastid | ADK1 (ADENOSINE KINASE 1) ADENOSINE KINASE/ COPPER ION BINDING |
| AT1G80030
| PredictedSynthetic Lethality | FSW = 0.0191
| Class C:plastid | DNAJ HEAT SHOCK PROTEIN PUTATIVE |
| AT1G03475
| PredictedAffinity Capture-MS | FSW = 0.0756
| Class C:plastid | LIN2 (LESION INITIATION 2) COPROPORPHYRINOGEN OXIDASE |
| AT4G23430
| PredictedSynthetic Lethality | FSW = 0.0031
| Class C:plastid | SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN |
| AT1G72730
| PredictedAffinity Capture-MS | FSW = 0.0935
| Class C:nucleus | EUKARYOTIC TRANSLATION INITIATION FACTOR 4A PUTATIVE / EIF-4A PUTATIVE |
| AT2G06510
| PredictedAffinity Capture-MSCo-expression | FSW = 0.0336
| Class C:nucleus | RPA1A (REPLICATION PROTEIN A 1A) DNA BINDING / NUCLEIC ACID BINDING |
| AT5G62880
| PredictedAffinity Capture-MS | FSW = 0.0171
| Class C:nucleus | ARAC10 GTP BINDING |
| AT4G14340
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1675
| Class C:nucleus | CKI1 (CASEIN KINASE I) KINASE/ PROTEIN SERINE/THREONINE KINASE |
| AT4G26720
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0164
| Class C:nucleus | PPX1 (PROTEIN PHOSPHATASE X 1) PROTEIN SERINE/THREONINE PHOSPHATASE |
| AT3G54610
| PredictedbiochemicalCo-expression | FSW = 0.0709
| Class C:nucleus | GCN5 DNA BINDING / H3 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE |
| AT3G54280
| PredictedAffinity Capture-MS | FSW = 0.0718
| Class C:nucleus | RGD3 (ROOT GROWTH DEFECTIVE 3) ATP BINDING / DNA BINDING / BINDING / HELICASE/ NUCLEIC ACID BINDING |
| AT4G10670
| PredictedAffinity Capture-MS | FSW = 0.1228
| Class C:nucleus | GTC2 |
| AT3G16810
| PredictedAffinity Capture-MSCo-expression | FSW = 0.0124
| Class C:nucleus | APUM24 (ARABIDOPSIS PUMILIO 24) RNA BINDING / BINDING |
| AT3G57300
| PredictedAffinity Capture-MS | FSW = 0.0806
| Class C:nucleus | INO80 (INO80 ORTHOLOG) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING |
| AT1G05120
| PredictedAffinity Capture-MS | FSW = 0.0311
| Class C:nucleus | SNF2 DOMAIN-CONTAINING PROTEIN / HELICASE DOMAIN-CONTAINING PROTEIN / RING FINGER DOMAIN-CONTAINING PROTEIN |
| AT1G55520
| PredictedAffinity Capture-MS | FSW = 0.0585
| Class C:nucleus | TBP2 (TATA BINDING PROTEIN 2) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ TATA-BINDING PROTEIN BINDING |
| AT3G06400
| PredictedAffinity Capture-MS | FSW = 0.0174
| Class C:nucleus | CHR11 (CHROMATIN-REMODELING PROTEIN 11) ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ HELICASE/ HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING / NUCLEOSOME BINDING |
| AT1G14010
| PredictedAffinity Capture-MS | FSW = 0.1032
| Unknown | EMP24/GP25L/P24 FAMILY PROTEIN |
| AT3G25800
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1556
| Unknown | PP2AA2 (PROTEIN PHOSPHATASE 2A SUBUNIT A2) PROTEIN PHOSPHATASE TYPE 2A REGULATOR |
| AT1G73180
| PredictedAffinity Capture-MS | FSW = 0.0111
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR-RELATED |
| AT2G19480
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1110
| Unknown | NAP12 (NUCLEOSOME ASSEMBLY PROTEIN 12) DNA BINDING |
| AT3G08980
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1323
| Unknown | SIGNAL PEPTIDASE I FAMILY PROTEIN |
| AT3G54300
| PredictedAffinity Capture-MS | FSW = 0.1151
| Unknown | ATVAMP727 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 727) |
| AT2G38960
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0992
| Unknown | AERO2 (ARABIDOPSIS ENDOPLASMIC RETICULUM OXIDOREDUCTINS 2) FAD BINDING / ELECTRON CARRIER/ OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS DISULFIDE AS ACCEPTOR / PROTEIN BINDING |
| AT3G23890
| PredictedAffinity Capture-MSCo-expression | FSW = 0.0680
| Unknown | TOPII (TOPOISOMERASE II) ATP BINDING / DNA BINDING / DNA TOPOISOMERASE (ATP-HYDROLYZING)/ DNA TOPOISOMERASE/ DNA-DEPENDENT ATPASE |
| AT3G28730
| PredictedAffinity Capture-MSCo-expression | FSW = 0.0962
| Unknown | ATHMG (ARABIDOPSIS THALIANA HIGH MOBILITY GROUP) TRANSCRIPTION FACTOR |
| AT2G37560
| PredictedAffinity Capture-MSCo-expression | FSW = 0.0220
| Unknown | ORC2 (ORIGIN RECOGNITION COMPLEX SECOND LARGEST SUBUNIT 2) DNA REPLICATION ORIGIN BINDING / PROTEIN BINDING |
| AT2G16740
| PredictedSynthetic Lethality | FSW = 0.0034
| Unknown | UBC29 (UBIQUITIN-CONJUGATING ENZYME 29) UBIQUITIN-PROTEIN LIGASE |
| AT2G20410
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1205
| Unknown | ACTIVATING SIGNAL COINTEGRATOR-RELATED |
| AT4G31985
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2116
| Unknown | 60S RIBOSOMAL PROTEIN L39 (RPL39C) |
| AT2G31060
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1846
| Unknown | ELONGATION FACTOR FAMILY PROTEIN |
| AT3G53880
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0972
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
| AT5G56740
| PredictedAffinity Capture-MSCo-expression | FSW = 0.0450
| Unknown | HAG2 (HISTONE ACETYLTRANSFERASE OF THE GNAT FAMILY 2) H4 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE |
| AT3G09670
| PredictedAffinity Capture-MS | FSW = 0.0281
| Unknown | PWWP DOMAIN-CONTAINING PROTEIN |
| AT3G06670
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0407
| Unknown | BINDING |
| AT2G22425
| PredictedAffinity Capture-MS | FSW = 0.0137
| Unknown | PEPTIDASE |
| AT1G09200 | PredictedAffinity Capture-MSCo-expression | FSW = 0.1601
| Unknown | HISTONE H3 |
| AT1G08880
| PredictedAffinity Capture-MSCo-expression | FSW = 0.2124
| Unknown | H2AXA DNA BINDING |
| AT1G26170 | PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.0978
| Unknown | BINDING / PROTEIN TRANSPORTER |
| AT1G52740
| PredictedAffinity Capture-MS | FSW = 0.0524
| Unknown | HTA9 (HISTONE H2A PROTEIN 9) DNA BINDING |
| AT1G80710
| PredictedAffinity Capture-MS | FSW = 0.0234
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
| AT2G26830
| PredictedAffinity Capture-MS | FSW = 0.0140
| Unknown | EMB1187 (EMBRYO DEFECTIVE 1187) KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR |
| AT1G04950
| PredictedAffinity Capture-MS | FSW = 0.0524
| Unknown | TAF6 (TBP-ASSOCIATED FACTOR 6) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ TRANSCRIPTION INITIATION FACTOR |
| AT5G01720
| PredictedAffinity Capture-MS | FSW = 0.0076
| Unknown | F-BOX FAMILY PROTEIN (FBL3) |
| AT3G05090
| PredictedAffinity Capture-MS | FSW = 0.0133
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
| AT2G36930
| PredictedAffinity Capture-MS | FSW = 0.0126
| Unknown | ZINC FINGER (C2H2 TYPE) FAMILY PROTEIN |
| AT2G23080
| PredictedAffinity Capture-MS | FSW = 0.0613
| Unknown | CASEIN KINASE II ALPHA CHAIN PUTATIVE |
| AT1G19480
| PredictedAffinity Capture-MS | FSW = 0.0449
| Unknown | HHH-GPD BASE EXCISION DNA REPAIR FAMILY PROTEIN |
| AT5G22110
| PredictedAffinity Capture-MS | FSW = 0.0224
| Unknown | ATDPB2 (ARABIDOPSIS THALIANA DNA POLYMERASE EPSILON SUBUNIT B2) DNA BINDING / DNA-DIRECTED DNA POLYMERASE/ NUCLEIC ACID BINDING |
| AT1G08260
| PredictedAffinity Capture-MSCo-expression | FSW = 0.0363
| Unknown | TIL1 (TILTED 1) DNA BINDING / DNA-DIRECTED DNA POLYMERASE/ NUCLEIC ACID BINDING / NUCLEOTIDE BINDING / ZINC ION BINDING |
| AT5G45140
| PredictedAffinity Capture-MSCo-expression | FSW = 0.0735
| Unknown | NRPC2 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ RIBONUCLEOSIDE BINDING |
| AT1G29940 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0095
| Unknown | NRPA2 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ RIBONUCLEOSIDE BINDING |
| AT5G60040
| PredictedAffinity Capture-MSCo-expression | FSW = 0.0279
| Unknown | NRPC1 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ RIBONUCLEOSIDE BINDING / ZINC ION BINDING |
| AT5G55300
| PredictedAffinity Capture-MSCo-expression | FSW = 0.0361
| Unknown | TOP1ALPHA (DNA TOPOISOMERASE I ALPHA) DNA TOPOISOMERASE TYPE I |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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