Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G16810 - ( APUM24 (Arabidopsis Pumilio 24) RNA binding / binding )
78 Proteins interacs with AT3G16810| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT3G25520
   | PredictedAffinity Capture-MSCo-expression | FSW = 0.3064
| Class C:nucleus | ATL5 (A THALIANA RIBOSOMAL PROTEIN L5) 5S RRNA BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT2G18020
| PredictedAffinity Capture-MS | FSW = 0.1971
| Class C:nucleus | EMB2296 (EMBRYO DEFECTIVE 2296) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT3G09630
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2092
| Class C:nucleus | 60S RIBOSOMAL PROTEIN L4/L1 (RPL4A) |
| AT2G47610
| PredictedAffinity Capture-MSCo-expression | FSW = 0.3111
| Class C:nucleus | 60S RIBOSOMAL PROTEIN L7A (RPL7AA) |
| AT1G43170
| PredictedAffinity Capture-MS | FSW = 0.2626
| Class C:nucleus | ARP1 (ARABIDOPSIS RIBOSOMAL PROTEIN 1) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT5G22440
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3013
| Class C:nucleus | 60S RIBOSOMAL PROTEIN L10A (RPL10AC) |
| AT3G03920
| PredictedAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.0779
| Class C:nucleus | GAR1 RNA-BINDING REGION FAMILY PROTEIN |
| AT1G07790
| PredictedAffinity Capture-MSCo-expression | FSW = 0.0124
| Class C:nucleus | HTB1 DNA BINDING |
| AT3G01610
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3717
| Class C:nucleus | CDC48C ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
| AT2G27710
| PredictedAffinity Capture-MS | FSW = 0.1139
| Class C:nucleus | 60S ACIDIC RIBOSOMAL PROTEIN P2 (RPP2B) |
| AT3G11964 | PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.3862
| Class C:nucleus | RNA BINDING |
| AT2G39460
| PredictedAffinity Capture-MSCo-expression | FSW = 0.1758
| Class C:nucleus | RPL23AA (RIBOSOMAL PROTEIN L23AA) RNA BINDING / NUCLEOTIDE BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT5G39740
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3819
| Class C:nucleus | 60S RIBOSOMAL PROTEIN L5 (RPL5B) |
| AT2G33370 | PredictedAffinity Capture-MS | FSW = 0.1225
| Class C:nucleus | 60S RIBOSOMAL PROTEIN L23 (RPL23B) |
| AT4G16830
| PredictedAffinity Capture-MS | FSW = 0.0281
| Class C:nucleus | NUCLEAR RNA-BINDING PROTEIN (RGGA) |
| AT2G44860
| PredictedAffinity Capture-MSCo-expression | FSW = 0.3021
| Class C:nucleus | 60S RIBOSOMAL PROTEIN L24 PUTATIVE |
| AT5G04600
| PredictedAffinity Capture-MS | FSW = 0.5078
| Class C:nucleus | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
| AT4G25630
| PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.2731
| Class C:nucleus | FIB2 (FIBRILLARIN 2) SNORNA BINDING |
| AT1G10300 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4045
| Class C:nucleus | GTP-BINDING PROTEIN-RELATED |
| AT4G26600
| PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.2372
| Class C:nucleus | NUCLEOLAR PROTEIN PUTATIVE |
| AT1G72440
| PredictedAffinity Capture-MS | FSW = 0.5009
| Class C:nucleus | EDA25 (EMBRYO SAC DEVELOPMENT ARREST 25) |
| AT3G23620
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.5748
| Class C:nucleus | BRIX DOMAIN-CONTAINING PROTEIN |
| AT3G57150
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.2279
| Class C:nucleus | NAP57 (ARABIDOPSIS THALIANA HOMOLOGUE OF NAP57) PSEUDOURIDINE SYNTHASE |
| AT4G17390
| PredictedAffinity Capture-MS | FSW = 0.2756
| Class C:nucleus | 60S RIBOSOMAL PROTEIN L15 (RPL15B) |
| AT5G48240
| PredictedAffinity Capture-MS | FSW = 0.3349
| Class C:nucleus | UNKNOWN PROTEIN |
| AT5G55920
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.5226
| Class C:nucleus | NUCLEOLAR PROTEIN PUTATIVE |
| AT3G07050
| PredictedAffinity Capture-MSCo-expression | FSW = 0.4291
| Class C:nucleus | GTP-BINDING FAMILY PROTEIN |
| AT3G58660
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4596
| Class C:nucleus | 60S RIBOSOMAL PROTEIN-RELATED |
| AT3G12860
| PredictedAffinity Capture-MS | FSW = 0.1172
| Class C:nucleus | NUCLEOLAR PROTEIN NOP56 PUTATIVE |
| AT4G08350
| PredictedAffinity Capture-MS | FSW = 0.0522
| Class C:nucleus | GTA2 (GLOBAL TRANSCRIPTION FACTOR GROUP A2) STRUCTURAL CONSTITUENT OF RIBOSOME / TRANSCRIPTION ELONGATION REGULATOR/ TRANSCRIPTION FACTOR |
| AT2G34210
| PredictedAffinity Capture-MS | FSW = 0.0597
| Class C:nucleus | STRUCTURAL CONSTITUENT OF RIBOSOME / TRANSCRIPTION ELONGATION REGULATOR/ TRANSCRIPTION INITIATION FACTOR |
| AT3G18600
| PredictedAffinity Capture-MSCo-expression | FSW = 0.2259
| Class C:nucleus | DEAD/DEAH BOX HELICASE PUTATIVE |
| AT3G55620
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.4743
| Class C:nucleus | EMB1624 (EMBRYO DEFECTIVE 1624) RIBOSOME BINDING / TRANSLATION INITIATION FACTOR |
| AT5G15550
| PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.4872
| Class C:nucleus | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
| AT2G17360
| PredictedAffinity Capture-MS | FSW = 0.1020
| Unknown | 40S RIBOSOMAL PROTEIN S4 (RPS4A) |
| AT4G16720
| PredictedAffinity Capture-MS | FSW = 0.0425
| Unknown | 60S RIBOSOMAL PROTEIN L15 (RPL15A) |
| AT3G13580
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3988
| Unknown | 60S RIBOSOMAL PROTEIN L7 (RPL7D) |
| AT1G06380
| PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.4125
| Unknown | RIBOSOMAL PROTEIN-RELATED |
| AT4G34580
| PredictedSynthetic Lethality | FSW = 0.0051
| Unknown | COW1 (CAN OF WORMS1) PHOSPHATIDYLINOSITOL TRANSPORTER/ TRANSPORTER |
| AT5G52640
| Predictedsynthetic growth defect | FSW = 0.0074
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
| AT1G76810 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.1277
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 2 FAMILY PROTEIN / EIF-2 FAMILY PROTEIN |
| AT4G15000
| PredictedAffinity Capture-MS | FSW = 0.1495
| Unknown | 60S RIBOSOMAL PROTEIN L27 (RPL27C) |
| AT2G40360
| PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.4556
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
| AT1G50920
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4986
| Unknown | GTP-BINDING PROTEIN-RELATED |
| AT1G61580
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3874
| Unknown | RPL3B (R-PROTEIN L3 B) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT3G27530
| Predictedtwo hybridtwo hybrid | FSW = 0.0101
| Unknown | GC6 (GOLGIN CANDIDATE 6) BINDING / PROTEIN TRANSPORTER |
| AT1G25260
| PredictedAffinity Capture-MS | FSW = 0.2709
| Unknown | ACIDIC RIBOSOMAL PROTEIN P0-RELATED |
| AT1G79150
| PredictedAffinity Capture-MS | FSW = 0.4630
| Unknown | BINDING |
| AT2G03820
| Predictedco-fractionationCo-fractionation | FSW = 0.1479
| Unknown | NONSENSE-MEDIATED MRNA DECAY NMD3 FAMILY PROTEIN |
| AT2G18220
| PredictedAffinity Capture-MS | FSW = 0.5948
| Unknown | INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S UNCHARACTERISED PROTEIN FAMILY UPF0120 (INTERPROIPR005343) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS RBL (REBELOTE) (TAIRAT3G555101) HAS 4846 BLAST HITS TO 3236 PROTEINS IN 249 SPECIES ARCHAE - 2 BACTERIA - 127 METAZOA - 2049 FUNGI - 594 PLANTS - 200 VIRUSES - 69 OTHER EUKARYOTES - 1805 (SOURCE NCBI BLINK) |
| AT2G21440
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.5884
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
| AT2G34357 | PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.2458
| Unknown | BINDING |
| AT3G15460
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4889
| Unknown | BRIX DOMAIN-CONTAINING PROTEIN |
| AT1G32750
| PredictedAffinity Capture-MS | FSW = 0.0133
| Unknown | HAF01 DNA BINDING / HISTONE ACETYLTRANSFERASE |
| AT2G17250
| PredictedAffinity Capture-MSCo-expression | FSW = 0.0788
| Unknown | EMB2762 (EMBRYO DEFECTIVE 2762) |
| AT2G36930
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.2193
| Unknown | ZINC FINGER (C2H2 TYPE) FAMILY PROTEIN |
| AT3G01160
| PredictedAffinity Capture-MSCo-expression | FSW = 0.1187
| Unknown | UNKNOWN PROTEIN |
| AT3G16840
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.3577
| Unknown | ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING |
| AT5G05450
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4929
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE (RH18) |
| AT5G20600
| PredictedAffinity Capture-MS | FSW = 0.3932
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RRNA PROCESSING LOCATED IN PRERIBOSOME SMALL SUBUNIT PRECURSOR EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NUCLEOLAR NOP52 (INTERPROIPR010301) HAS 444 BLAST HITS TO 431 PROTEINS IN 151 SPECIES ARCHAE - 0 BACTERIA - 10 METAZOA - 196 FUNGI - 114 PLANTS - 27 VIRUSES - 0 OTHER EUKARYOTES - 97 (SOURCE NCBI BLINK) |
| AT5G61770
| PredictedAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.3770
| Unknown | PPAN (PETER PAN-LIKE PROTEIN) |
| AT3G18740
| PredictedAffinity Capture-MS | FSW = 0.2594
| Unknown | 60S RIBOSOMAL PROTEIN L30 (RPL30C) |
| AT3G24830
| PredictedAffinity Capture-MS | FSW = 0.2237
| Unknown | 60S RIBOSOMAL PROTEIN L13A (RPL13AB) |
| AT3G55280
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3106
| Unknown | RPL23AB (RIBOSOMAL PROTEIN L23AB) RNA BINDING / NUCLEOTIDE BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT4G01560
| PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.5485
| Unknown | MEE49 (MATERNAL EFFECT EMBRYO ARREST 49) |
| AT4G15770
| PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.4860
| Unknown | RNA BINDING / PROTEIN BINDING |
| AT4G16630
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4990
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE (RH28) |
| AT4G34910
| PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.3057
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE (RH16) |
| AT5G65900
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4837
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
| AT2G23080
| PredictedAffinity Capture-MS | FSW = 0.1285
| Unknown | CASEIN KINASE II ALPHA CHAIN PUTATIVE |
| AT1G29965
| PredictedAffinity Capture-MS | FSW = 0.2304
| Unknown | 60S RIBOSOMAL PROTEIN L18A (RPL18AA) |
| AT1G52930
| PredictedAffinity Capture-MSCo-expression | FSW = 0.4792
| Unknown | BRIX DOMAIN-CONTAINING PROTEIN |
| AT1G77050 | PredictedAffinity Capture-MSCo-expression | FSW = 0.2695
| Unknown | BRIX DOMAIN-CONTAINING PROTEIN |
| AT1G04480 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0978
| Unknown | 60S RIBOSOMAL PROTEIN L23 (RPL23A) |
| AT1G71280
| PredictedAffinity Capture-MS | FSW = 0.1548
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
| AT1G21160
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1070
| Unknown | GTP BINDING / GTPASE/ TRANSLATION INITIATION FACTOR |
| AT5G67380
| Predictedinteraction prediction | FSW = 0.0940
| Unknown | CKA1 (CASEIN KINASE ALPHA 1) KINASE |
| AT3G53650
| Predictedinteraction predictionCo-expression | FSW = 0.0175
| Unknown | HISTONE H2B PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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