Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G08350 - ( GTA2 (GLOBAL TRANSCRIPTION FACTOR GROUP A2) structural constituent of ribosome / transcription elongation regulator/ transcription factor )
91 Proteins interacs with AT4G08350Locus | Method | FSW ![]() | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G59690 | Predictedinterologs mapping | FSW = 0.0677
| Class C:nucleus | HISTONE H4 |
AT3G11964 | PredictedAffinity Capture-MS | FSW = 0.0928
| Class C:nucleus | RNA BINDING |
AT1G77840![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0367
| Class C:nucleus | EUKARYOTIC TRANSLATION INITIATION FACTOR 5 PUTATIVE / EIF-5 PUTATIVE |
AT2G44680![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0774
| Class C:nucleus | CKB4 (CASEIN KINASE II BETA SUBUNIT 4) PROTEIN SERINE/THREONINE KINASE |
AT3G10330![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0610
| Class C:nucleus | TRANSCRIPTION INITIATION FACTOR IIB-2 / GENERAL TRANSCRIPTION FACTOR TFIIB-2 (TFIIB2) |
AT4G26720![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0226
| Class C:nucleus | PPX1 (PROTEIN PHOSPHATASE X 1) PROTEIN SERINE/THREONINE PHOSPHATASE |
AT4G25630![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0718
| Class C:nucleus | FIB2 (FIBRILLARIN 2) SNORNA BINDING |
AT3G57660![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSAffinity Capture-Western | FSW = 0.0887
| Class C:nucleus | NRPA1 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ ZINC ION BINDING |
AT3G16980![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1142
| Class C:nucleus | NRPB9A DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ NUCLEIC ACID BINDING / TRANSCRIPTION REGULATOR/ ZINC ION BINDING |
AT5G37720![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0493
| Class C:nucleus | RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE |
AT3G13940![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0509
| Class C:nucleus | DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT3G57150![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0644
| Class C:nucleus | NAP57 (ARABIDOPSIS THALIANA HOMOLOGUE OF NAP57) PSEUDOURIDINE SYNTHASE |
AT4G10710![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.1937
| Class C:nucleus | SPT16 (GLOBAL TRANSCRIPTION FACTOR C) |
AT3G16810![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0522
| Class C:nucleus | APUM24 (ARABIDOPSIS PUMILIO 24) RNA BINDING / BINDING |
AT5G54910![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0653
| Class C:nucleus | DEAD/DEAH BOX HELICASE PUTATIVE |
AT5G55920![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0559
| Class C:nucleus | NUCLEOLAR PROTEIN PUTATIVE |
AT1G17980![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0240
| Class C:nucleus | NUCLEOTIDYLTRANSFERASE FAMILY PROTEIN |
AT1G65440![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternSynthetic Lethality | FSW = 0.1711
| Class C:nucleus | GTB1 RNA BINDING / HYDROLASE ACTING ON ESTER BONDS / TRANSCRIPTION ELONGATION REGULATOR |
AT2G13370![]() ![]() ![]() ![]() | PredictedAffinity Capture-WesternSynthetic Rescue | FSW = 0.1369
| Class C:nucleus | CHR5 (CHROMATIN REMODELING 5) ATP BINDING / DNA BINDING / CHROMATIN BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT2G15430![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1301
| Class C:nucleus | NRPB3 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION |
AT2G38560![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSPhenotypic Enhancementsynthetic growth defect | FSW = 0.1528
| Class C:nucleus | TFIIS (TRANSCRIPT ELONGATION FACTOR IIS) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION ELONGATION FACTOR/ TRANSCRIPTION FACTOR |
AT1G18040![]() ![]() ![]() ![]() | Predictedsynthetic growth defect | FSW = 0.0332
| Class C:nucleus | CDKD13 (CYCLIN-DEPENDENT KINASE D13) KINASE/ PROTEIN KINASE |
AT2G06210![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.1013
| Class C:nucleus | ELF8 (EARLY FLOWERING 8) BINDING |
AT4G35800![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSsynthetic growth defectsynthetic growth defectAffinity Capture-Westerninteraction prediction | FSW = 0.1958
| Unknown | NRPB1 (RNA POLYMERASE II LARGE SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT1G73180![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0256
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR-RELATED |
AT2G18040![]() ![]() ![]() ![]() | PredictedPhenotypic EnhancementAffinity Capture-MSSynthetic Lethalityinteraction prediction | FSW = 0.0947
| Unknown | PIN1AT (PEPTIDYLPROLYL CIS/TRANS ISOMERASE NIMA-INTERACTING 1) PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
AT1G70320![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0290
| Unknown | UPL2 (UBIQUITIN-PROTEIN LIGASE 2) UBIQUITIN-PROTEIN LIGASE |
AT1G75510![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1536
| Unknown | TRANSCRIPTION INITIATION FACTOR IIF BETA SUBUNIT (TFIIF-BETA) FAMILY PROTEIN |
AT3G59990![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0155
| Unknown | MAP2B (METHIONINE AMINOPEPTIDASE 2B) AMINOPEPTIDASE/ METALLOEXOPEPTIDASE |
AT4G17620![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0027
| Unknown | GLYCINE-RICH PROTEIN |
AT3G52090![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1717
| Unknown | NRPB11 DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT1G50920![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0484
| Unknown | GTP-BINDING PROTEIN-RELATED |
AT3G28730![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.1133
| Unknown | ATHMG (ARABIDOPSIS THALIANA HIGH MOBILITY GROUP) TRANSCRIPTION FACTOR |
AT4G21710![]() ![]() ![]() ![]() | PredictedSynthetic RescueAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSSynthetic Rescue | FSW = 0.2016
| Unknown | NRPB2 DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT5G59180![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.1720
| Unknown | NRPB7 DNA-DIRECTED RNA POLYMERASE/ RNA BINDING |
AT1G10490![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0294
| Unknown | UNKNOWN PROTEIN |
AT1G03360![]() ![]() ![]() ![]() | PredictedAffinity Capture-Western | FSW = 0.0222
| Unknown | ATRRP4 (ARABIDOPSIS THALIANA RIBOSOMAL RNA PROCESSING 4) RNA BINDING / EXONUCLEASE |
AT1G02080 | Predictedinterologs mapping | FSW = 0.0191
| Unknown | TRANSCRIPTIONAL REGULATOR-RELATED |
AT1G04950![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0516
| Unknown | TAF6 (TBP-ASSOCIATED FACTOR 6) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ TRANSCRIPTION INITIATION FACTOR |
AT1G08260![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0083
| Unknown | TIL1 (TILTED 1) DNA BINDING / DNA-DIRECTED DNA POLYMERASE/ NUCLEIC ACID BINDING / NUCLEOTIDE BINDING / ZINC ION BINDING |
AT1G16350![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0184
| Unknown | INOSINE-5-MONOPHOSPHATE DEHYDROGENASE PUTATIVE |
AT1G16800![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0412
| Unknown | TRNA-SPLICING ENDONUCLEASE POSITIVE EFFECTOR-RELATED |
AT1G17760![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0449
| Unknown | CSTF77 PROTEIN BINDING |
AT1G25260![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0189
| Unknown | ACIDIC RIBOSOMAL PROTEIN P0-RELATED |
AT1G29940 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0780
| Unknown | NRPA2 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ RIBONUCLEOSIDE BINDING |
AT1G31970![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0222
| Unknown | STRS1 (STRESS RESPONSE SUPPRESSOR 1) ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING |
AT1G32130![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.1038
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 25 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TFIIS N-TERMINAL (INTERPROIPR017923) IWS1 C-TERMINAL (INTERPROIPR008654) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS IWS1 C-TERMINUS FAMILY PROTEIN (TAIRAT4G190001) HAS 907 BLAST HITS TO 871 PROTEINS IN 182 SPECIES ARCHAE - 4 BACTERIA - 14 METAZOA - 417 FUNGI - 195 PLANTS - 42 VIRUSES - 8 OTHER EUKARYOTES - 227 (SOURCE NCBI BLINK) |
AT1G49760![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0718
| Unknown | PAB8 (POLY(A) BINDING PROTEIN 8) RNA BINDING / TRANSLATION INITIATION FACTOR |
AT1G54250![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1928
| Unknown | NRPB8A DNA-DIRECTED RNA POLYMERASE |
AT1G59760![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0224
| Unknown | ATP-DEPENDENT RNA HELICASE PUTATIVE |
AT1G60620![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0533
| Unknown | ATRPAC43 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION |
AT1G69070![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0210
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NOP14-LIKE PROTEIN (INTERPROIPR007276) HAS 64668 BLAST HITS TO 30830 PROTEINS IN 1152 SPECIES ARCHAE - 207 BACTERIA - 18692 METAZOA - 20758 FUNGI - 6782 PLANTS - 2177 VIRUSES - 523 OTHER EUKARYOTES - 15529 (SOURCE NCBI BLINK) |
AT1G79730![]() ![]() ![]() ![]() | PredictedSynthetic RescueAffinity Capture-MSAffinity Capture-Westerninteraction prediction | FSW = 0.1520
| Unknown | ELF7 (EARLY FLOWERING 7) |
AT2G23070![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0684
| Unknown | CASEIN KINASE II ALPHA CHAIN PUTATIVE |
AT2G27170![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0073
| Unknown | TTN7 (TITAN7) ATP BINDING / PROTEIN BINDING |
AT2G38280![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0085
| Unknown | FAC1 (EMBRYONIC FACTOR1) AMP DEAMINASE |
AT2G47420![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0111
| Unknown | DIMETHYLADENOSINE TRANSFERASE PUTATIVE |
AT3G01160![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0486
| Unknown | UNKNOWN PROTEIN |
AT3G06670![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MStwo hybridinteraction prediction | FSW = 0.0264
| Unknown | BINDING |
AT3G09100![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSSynthetic Lethality | FSW = 0.0711
| Unknown | MRNA CAPPING ENZYME FAMILY PROTEIN |
AT3G09720![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0158
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
AT3G20650![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0306
| Unknown | MRNA CAPPING ENZYME FAMILY PROTEIN |
AT3G22320![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1586
| Unknown | NRPB5 DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT3G47460![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0131
| Unknown | ATSMC2 TRANSPORTER |
AT3G58560![]() ![]() ![]() ![]() | Predictedinterologs mapping | FSW = 0.0490
| Unknown | ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN |
AT3G62240![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0170
| Unknown | ZINC FINGER (C2H2 TYPE) FAMILY PROTEIN |
AT1G42440![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0309
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RIBOSOME BIOGENESIS LOCATED IN NUCLEUS EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S AARP2CN (INTERPROIPR012948) PROTEIN OF UNKNOWN FUNCTION DUF663 (INTERPROIPR007034) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G067201) HAS 2447 BLAST HITS TO 1812 PROTEINS IN 205 SPECIES ARCHAE - 0 BACTERIA - 115 METAZOA - 903 FUNGI - 423 PLANTS - 100 VIRUSES - 53 OTHER EUKARYOTES - 853 (SOURCE NCBI BLINK) |
AT1G61040![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSsynthetic growth defectinteraction prediction | FSW = 0.1839
| Unknown | VIP5 (VERNALIZATION INDEPENDENCE 5) DNA BINDING |
AT3G22590![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.1221
| Unknown | RNA POL II ACCESSORY FACTOR CDC73 FAMILY PROTEIN |
AT3G59410![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0047
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT5G10270![]() ![]() ![]() ![]() | PredictedSynthetic Rescuesynthetic growth defect | FSW = 0.1253
| Unknown | CDKC1 (CYCLIN-DEPENDENT KINASE C1) KINASE |
AT5G58003![]() ![]() ![]() ![]() | Predictedsynthetic growth defect | FSW = 0.3172
| Unknown | CPL4 (C-TERMINAL DOMAIN PHOSPHATASE-LIKE 4) PHOSPHOPROTEIN PHOSPHATASE |
AT5G58410![]() ![]() ![]() ![]() | PredictedPhenotypic Enhancement | FSW = 0.1634
| Unknown | BINDING / PROTEIN BINDING / ZINC ION BINDING |
AT5G61150![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSSynthetic Rescueinteraction prediction | FSW = 0.1040
| Unknown | VIP4 (VERNALIZATION INDEPENDENCE 4) PROTEIN BINDING |
AT5G63670![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSSynthetic Lethality | FSW = 0.3634
| Unknown | SPT42 (SPT4 HOMOLOG 2) POSITIVE TRANSCRIPTION ELONGATION FACTOR/ ZINC ION BINDING |
AT4G19210![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0100
| Unknown | ATRLI2 TRANSPORTER |
AT4G34910![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0283
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE (RH16) |
AT5G10400 | Predictedinterologs mapping | FSW = 0.0505
| Unknown | HISTONE H3 |
AT5G11900![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0222
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 FAMILY PROTEIN |
AT5G13680![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0791
| Unknown | ABO1 (ABA-OVERLY SENSITIVE 1) TRANSCRIPTION ELONGATION REGULATOR |
AT5G14520![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0420
| Unknown | PESCADILLO-RELATED |
AT5G15070![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0169
| Unknown | ACID PHOSPHATASE/ OXIDOREDUCTASE/ TRANSITION METAL ION BINDING |
AT5G20600![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0413
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RRNA PROCESSING LOCATED IN PRERIBOSOME SMALL SUBUNIT PRECURSOR EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NUCLEOLAR NOP52 (INTERPROIPR010301) HAS 444 BLAST HITS TO 431 PROTEINS IN 151 SPECIES ARCHAE - 0 BACTERIA - 10 METAZOA - 196 FUNGI - 114 PLANTS - 27 VIRUSES - 0 OTHER EUKARYOTES - 97 (SOURCE NCBI BLINK) |
AT5G22010![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0163
| Unknown | ATRFC1 (REPLICATION FACTOR C 1) ATP BINDING / DNA BINDING / DNA CLAMP LOADER/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT5G22370![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0107
| Unknown | QQT1 (QUATRE-QUART 1) ATP BINDING / NUCLEOTIDE BINDING |
AT5G41010![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.1717
| Unknown | NRPB12 DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT5G51940![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2065
| Unknown | NRPB6A DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT5G63610![]() ![]() ![]() ![]() | Predictedsynthetic growth defect | FSW = 0.0495
| Unknown | CDKE1 (CYCLIN-DEPENDENT KINASE E1) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G67100![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0223
| Unknown | ICU2 (INCURVATA2) DNA-DIRECTED DNA POLYMERASE |
AT1G13290![]() ![]() ![]() ![]() | Predictedtwo hybrid | FSW = 0.0271
| Unknown | DOT5 (DEFECTIVELY ORGANIZED TRIBUTARIES 5) TRANSCRIPTION FACTOR |
AT1G34370![]() ![]() ![]() ![]() | Predictedtwo hybrid | FSW = 0.0295
| Unknown | STOP1 (SENSITIVE TO PROTON RHIZOTOXICITY 1) NUCLEIC ACID BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454