Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G08350 - ( GTA2 (GLOBAL TRANSCRIPTION FACTOR GROUP A2) structural constituent of ribosome / transcription elongation regulator/ transcription factor )

91 Proteins interacs with AT4G08350
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G59690Predicted

interologs mapping

FSW = 0.0677

Class C:

nucleus

HISTONE H4
AT3G11964Predicted

Affinity Capture-MS

FSW = 0.0928

Class C:

nucleus

RNA BINDING
AT1G77840

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0367

Class C:

nucleus

EUKARYOTIC TRANSLATION INITIATION FACTOR 5 PUTATIVE / EIF-5 PUTATIVE
AT2G44680

Predicted

Affinity Capture-MS

FSW = 0.0774

Class C:

nucleus

CKB4 (CASEIN KINASE II BETA SUBUNIT 4) PROTEIN SERINE/THREONINE KINASE
AT3G10330

Predicted

Affinity Capture-MS

FSW = 0.0610

Class C:

nucleus

TRANSCRIPTION INITIATION FACTOR IIB-2 / GENERAL TRANSCRIPTION FACTOR TFIIB-2 (TFIIB2)
AT4G26720

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0226

Class C:

nucleus

PPX1 (PROTEIN PHOSPHATASE X 1) PROTEIN SERINE/THREONINE PHOSPHATASE
AT4G25630

Predicted

Affinity Capture-MS

FSW = 0.0718

Class C:

nucleus

FIB2 (FIBRILLARIN 2) SNORNA BINDING
AT3G57660

Predicted

Affinity Capture-MS

Affinity Capture-Western

FSW = 0.0887

Class C:

nucleus

NRPA1 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ ZINC ION BINDING
AT3G16980

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1142

Class C:

nucleus

NRPB9A DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ NUCLEIC ACID BINDING / TRANSCRIPTION REGULATOR/ ZINC ION BINDING
AT5G37720

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0493

Class C:

nucleus

RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE
AT3G13940

Predicted

Affinity Capture-MS

FSW = 0.0509

Class C:

nucleus

DNA BINDING / DNA-DIRECTED RNA POLYMERASE
AT3G57150

Predicted

Affinity Capture-MS

FSW = 0.0644

Class C:

nucleus

NAP57 (ARABIDOPSIS THALIANA HOMOLOGUE OF NAP57) PSEUDOURIDINE SYNTHASE
AT4G10710

Predicted

Affinity Capture-MS

FSW = 0.1937

Class C:

nucleus

SPT16 (GLOBAL TRANSCRIPTION FACTOR C)
AT3G16810

Predicted

Affinity Capture-MS

FSW = 0.0522

Class C:

nucleus

APUM24 (ARABIDOPSIS PUMILIO 24) RNA BINDING / BINDING
AT5G54910

Predicted

Affinity Capture-MS

FSW = 0.0653

Class C:

nucleus

DEAD/DEAH BOX HELICASE PUTATIVE
AT5G55920

Predicted

Affinity Capture-MS

FSW = 0.0559

Class C:

nucleus

NUCLEOLAR PROTEIN PUTATIVE
AT1G17980

Predicted

Affinity Capture-MS

FSW = 0.0240

Class C:

nucleus

NUCLEOTIDYLTRANSFERASE FAMILY PROTEIN
AT1G65440

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

Synthetic Lethality

FSW = 0.1711

Class C:

nucleus

GTB1 RNA BINDING / HYDROLASE ACTING ON ESTER BONDS / TRANSCRIPTION ELONGATION REGULATOR
AT2G13370

Predicted

Affinity Capture-Western

Synthetic Rescue

FSW = 0.1369

Class C:

nucleus

CHR5 (CHROMATIN REMODELING 5) ATP BINDING / DNA BINDING / CHROMATIN BINDING / HELICASE/ NUCLEIC ACID BINDING
AT2G15430

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1301

Class C:

nucleus

NRPB3 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION
AT2G38560

Predicted

Affinity Capture-MS

Phenotypic Enhancement

synthetic growth defect

FSW = 0.1528

Class C:

nucleus

TFIIS (TRANSCRIPT ELONGATION FACTOR IIS) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION ELONGATION FACTOR/ TRANSCRIPTION FACTOR
AT1G18040

Predicted

synthetic growth defect

FSW = 0.0332

Class C:

nucleus

CDKD13 (CYCLIN-DEPENDENT KINASE D13) KINASE/ PROTEIN KINASE
AT2G06210

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.1013

Class C:

nucleus

ELF8 (EARLY FLOWERING 8) BINDING
AT4G35800

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

synthetic growth defect

synthetic growth defect

Affinity Capture-Western

interaction prediction

FSW = 0.1958

Unknown

NRPB1 (RNA POLYMERASE II LARGE SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE
AT1G73180

Predicted

Affinity Capture-MS

FSW = 0.0256

Unknown

EUKARYOTIC TRANSLATION INITIATION FACTOR-RELATED
AT2G18040

Predicted

Phenotypic Enhancement

Affinity Capture-MS

Synthetic Lethality

interaction prediction

FSW = 0.0947

Unknown

PIN1AT (PEPTIDYLPROLYL CIS/TRANS ISOMERASE NIMA-INTERACTING 1) PEPTIDYL-PROLYL CIS-TRANS ISOMERASE
AT1G70320

Predicted

Affinity Capture-MS

FSW = 0.0290

Unknown

UPL2 (UBIQUITIN-PROTEIN LIGASE 2) UBIQUITIN-PROTEIN LIGASE
AT1G75510

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1536

Unknown

TRANSCRIPTION INITIATION FACTOR IIF BETA SUBUNIT (TFIIF-BETA) FAMILY PROTEIN
AT3G59990

Predicted

Affinity Capture-MS

FSW = 0.0155

Unknown

MAP2B (METHIONINE AMINOPEPTIDASE 2B) AMINOPEPTIDASE/ METALLOEXOPEPTIDASE
AT4G17620

Predicted

Affinity Capture-MS

FSW = 0.0027

Unknown

GLYCINE-RICH PROTEIN
AT3G52090

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1717

Unknown

NRPB11 DNA BINDING / DNA-DIRECTED RNA POLYMERASE
AT1G50920

Predicted

Affinity Capture-MS

FSW = 0.0484

Unknown

GTP-BINDING PROTEIN-RELATED
AT3G28730

Predicted

Affinity Capture-MS

FSW = 0.1133

Unknown

ATHMG (ARABIDOPSIS THALIANA HIGH MOBILITY GROUP) TRANSCRIPTION FACTOR
AT4G21710

Predicted

Synthetic Rescue

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Synthetic Rescue

FSW = 0.2016

Unknown

NRPB2 DNA BINDING / DNA-DIRECTED RNA POLYMERASE
AT5G59180

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.1720

Unknown

NRPB7 DNA-DIRECTED RNA POLYMERASE/ RNA BINDING
AT1G10490

Predicted

Affinity Capture-MS

FSW = 0.0294

Unknown

UNKNOWN PROTEIN
AT1G03360

Predicted

Affinity Capture-Western

FSW = 0.0222

Unknown

ATRRP4 (ARABIDOPSIS THALIANA RIBOSOMAL RNA PROCESSING 4) RNA BINDING / EXONUCLEASE
AT1G02080Predicted

interologs mapping

FSW = 0.0191

Unknown

TRANSCRIPTIONAL REGULATOR-RELATED
AT1G04950

Predicted

Affinity Capture-MS

FSW = 0.0516

Unknown

TAF6 (TBP-ASSOCIATED FACTOR 6) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ TRANSCRIPTION INITIATION FACTOR
AT1G08260

Predicted

Affinity Capture-MS

FSW = 0.0083

Unknown

TIL1 (TILTED 1) DNA BINDING / DNA-DIRECTED DNA POLYMERASE/ NUCLEIC ACID BINDING / NUCLEOTIDE BINDING / ZINC ION BINDING
AT1G16350

Predicted

Affinity Capture-MS

FSW = 0.0184

Unknown

INOSINE-5-MONOPHOSPHATE DEHYDROGENASE PUTATIVE
AT1G16800

Predicted

Affinity Capture-MS

FSW = 0.0412

Unknown

TRNA-SPLICING ENDONUCLEASE POSITIVE EFFECTOR-RELATED
AT1G17760

Predicted

Affinity Capture-MS

FSW = 0.0449

Unknown

CSTF77 PROTEIN BINDING
AT1G25260

Predicted

Affinity Capture-MS

FSW = 0.0189

Unknown

ACIDIC RIBOSOMAL PROTEIN P0-RELATED
AT1G29940Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0780

Unknown

NRPA2 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ RIBONUCLEOSIDE BINDING
AT1G31970

Predicted

Affinity Capture-MS

FSW = 0.0222

Unknown

STRS1 (STRESS RESPONSE SUPPRESSOR 1) ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING
AT1G32130

Predicted

Affinity Capture-MS

FSW = 0.1038

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 25 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TFIIS N-TERMINAL (INTERPROIPR017923) IWS1 C-TERMINAL (INTERPROIPR008654) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS IWS1 C-TERMINUS FAMILY PROTEIN (TAIRAT4G190001) HAS 907 BLAST HITS TO 871 PROTEINS IN 182 SPECIES ARCHAE - 4 BACTERIA - 14 METAZOA - 417 FUNGI - 195 PLANTS - 42 VIRUSES - 8 OTHER EUKARYOTES - 227 (SOURCE NCBI BLINK)
AT1G49760

Predicted

Affinity Capture-MS

FSW = 0.0718

Unknown

PAB8 (POLY(A) BINDING PROTEIN 8) RNA BINDING / TRANSLATION INITIATION FACTOR
AT1G54250

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1928

Unknown

NRPB8A DNA-DIRECTED RNA POLYMERASE
AT1G59760

Predicted

Affinity Capture-MS

FSW = 0.0224

Unknown

ATP-DEPENDENT RNA HELICASE PUTATIVE
AT1G60620

Predicted

Affinity Capture-MS

FSW = 0.0533

Unknown

ATRPAC43 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION
AT1G69070

Predicted

Affinity Capture-MS

FSW = 0.0210

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NOP14-LIKE PROTEIN (INTERPROIPR007276) HAS 64668 BLAST HITS TO 30830 PROTEINS IN 1152 SPECIES ARCHAE - 207 BACTERIA - 18692 METAZOA - 20758 FUNGI - 6782 PLANTS - 2177 VIRUSES - 523 OTHER EUKARYOTES - 15529 (SOURCE NCBI BLINK)
AT1G79730

Predicted

Synthetic Rescue

Affinity Capture-MS

Affinity Capture-Western

interaction prediction

FSW = 0.1520

Unknown

ELF7 (EARLY FLOWERING 7)
AT2G23070

Predicted

Affinity Capture-MS

FSW = 0.0684

Unknown

CASEIN KINASE II ALPHA CHAIN PUTATIVE
AT2G27170

Predicted

Affinity Capture-MS

FSW = 0.0073

Unknown

TTN7 (TITAN7) ATP BINDING / PROTEIN BINDING
AT2G38280

Predicted

Affinity Capture-MS

FSW = 0.0085

Unknown

FAC1 (EMBRYONIC FACTOR1) AMP DEAMINASE
AT2G47420

Predicted

Affinity Capture-MS

FSW = 0.0111

Unknown

DIMETHYLADENOSINE TRANSFERASE PUTATIVE
AT3G01160

Predicted

Affinity Capture-MS

FSW = 0.0486

Unknown

UNKNOWN PROTEIN
AT3G06670

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

two hybrid

interaction prediction

FSW = 0.0264

Unknown

BINDING
AT3G09100

Predicted

Affinity Capture-MS

Synthetic Lethality

FSW = 0.0711

Unknown

MRNA CAPPING ENZYME FAMILY PROTEIN
AT3G09720

Predicted

Affinity Capture-MS

FSW = 0.0158

Unknown

DEAD/DEAH BOX HELICASE PUTATIVE
AT3G20650

Predicted

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.0306

Unknown

MRNA CAPPING ENZYME FAMILY PROTEIN
AT3G22320

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1586

Unknown

NRPB5 DNA BINDING / DNA-DIRECTED RNA POLYMERASE
AT3G47460

Predicted

Affinity Capture-MS

FSW = 0.0131

Unknown

ATSMC2 TRANSPORTER
AT3G58560

Predicted

interologs mapping

FSW = 0.0490

Unknown

ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN
AT3G62240

Predicted

Affinity Capture-MS

FSW = 0.0170

Unknown

ZINC FINGER (C2H2 TYPE) FAMILY PROTEIN
AT1G42440

Predicted

Affinity Capture-MS

FSW = 0.0309

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RIBOSOME BIOGENESIS LOCATED IN NUCLEUS EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S AARP2CN (INTERPROIPR012948) PROTEIN OF UNKNOWN FUNCTION DUF663 (INTERPROIPR007034) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G067201) HAS 2447 BLAST HITS TO 1812 PROTEINS IN 205 SPECIES ARCHAE - 0 BACTERIA - 115 METAZOA - 903 FUNGI - 423 PLANTS - 100 VIRUSES - 53 OTHER EUKARYOTES - 853 (SOURCE NCBI BLINK)
AT1G61040

Predicted

Affinity Capture-MS

synthetic growth defect

interaction prediction

FSW = 0.1839

Unknown

VIP5 (VERNALIZATION INDEPENDENCE 5) DNA BINDING
AT3G22590

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.1221

Unknown

RNA POL II ACCESSORY FACTOR CDC73 FAMILY PROTEIN
AT3G59410

Predicted

Affinity Capture-MS

FSW = 0.0047

Unknown

PROTEIN KINASE FAMILY PROTEIN
AT5G10270

Predicted

Synthetic Rescue

synthetic growth defect

FSW = 0.1253

Unknown

CDKC1 (CYCLIN-DEPENDENT KINASE C1) KINASE
AT5G58003

Predicted

synthetic growth defect

FSW = 0.3172

Unknown

CPL4 (C-TERMINAL DOMAIN PHOSPHATASE-LIKE 4) PHOSPHOPROTEIN PHOSPHATASE
AT5G58410

Predicted

Phenotypic Enhancement

FSW = 0.1634

Unknown

BINDING / PROTEIN BINDING / ZINC ION BINDING
AT5G61150

Predicted

Affinity Capture-MS

Synthetic Rescue

interaction prediction

FSW = 0.1040

Unknown

VIP4 (VERNALIZATION INDEPENDENCE 4) PROTEIN BINDING
AT5G63670

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Synthetic Lethality

FSW = 0.3634

Unknown

SPT42 (SPT4 HOMOLOG 2) POSITIVE TRANSCRIPTION ELONGATION FACTOR/ ZINC ION BINDING
AT4G19210

Predicted

Affinity Capture-MS

FSW = 0.0100

Unknown

ATRLI2 TRANSPORTER
AT4G34910

Predicted

Affinity Capture-MS

FSW = 0.0283

Unknown

DEAD/DEAH BOX HELICASE PUTATIVE (RH16)
AT5G10400Predicted

interologs mapping

FSW = 0.0505

Unknown

HISTONE H3
AT5G11900

Predicted

Affinity Capture-MS

FSW = 0.0222

Unknown

EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 FAMILY PROTEIN
AT5G13680

Predicted

Affinity Capture-MS

FSW = 0.0791

Unknown

ABO1 (ABA-OVERLY SENSITIVE 1) TRANSCRIPTION ELONGATION REGULATOR
AT5G14520

Predicted

Affinity Capture-MS

FSW = 0.0420

Unknown

PESCADILLO-RELATED
AT5G15070

Predicted

Affinity Capture-MS

FSW = 0.0169

Unknown

ACID PHOSPHATASE/ OXIDOREDUCTASE/ TRANSITION METAL ION BINDING
AT5G20600

Predicted

Affinity Capture-MS

FSW = 0.0413

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RRNA PROCESSING LOCATED IN PRERIBOSOME SMALL SUBUNIT PRECURSOR EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NUCLEOLAR NOP52 (INTERPROIPR010301) HAS 444 BLAST HITS TO 431 PROTEINS IN 151 SPECIES ARCHAE - 0 BACTERIA - 10 METAZOA - 196 FUNGI - 114 PLANTS - 27 VIRUSES - 0 OTHER EUKARYOTES - 97 (SOURCE NCBI BLINK)
AT5G22010

Predicted

Affinity Capture-MS

FSW = 0.0163

Unknown

ATRFC1 (REPLICATION FACTOR C 1) ATP BINDING / DNA BINDING / DNA CLAMP LOADER/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING
AT5G22370

Predicted

Affinity Capture-MS

FSW = 0.0107

Unknown

QQT1 (QUATRE-QUART 1) ATP BINDING / NUCLEOTIDE BINDING
AT5G41010

Predicted

Affinity Capture-MS

FSW = 0.1717

Unknown

NRPB12 DNA BINDING / DNA-DIRECTED RNA POLYMERASE
AT5G51940

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2065

Unknown

NRPB6A DNA BINDING / DNA-DIRECTED RNA POLYMERASE
AT5G63610

Predicted

synthetic growth defect

FSW = 0.0495

Unknown

CDKE1 (CYCLIN-DEPENDENT KINASE E1) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT5G67100

Predicted

Affinity Capture-MS

FSW = 0.0223

Unknown

ICU2 (INCURVATA2) DNA-DIRECTED DNA POLYMERASE
AT1G13290

Predicted

two hybrid

FSW = 0.0271

Unknown

DOT5 (DEFECTIVELY ORGANIZED TRIBUTARIES 5) TRANSCRIPTION FACTOR
AT1G34370

Predicted

two hybrid

FSW = 0.0295

Unknown

STOP1 (SENSITIVE TO PROTON RHIZOTOXICITY 1) NUCLEIC ACID BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454