Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Welcome to AtPIN
AtPIN will be upgraded. Please send your suggestions here
AT4G19210 - ( ATRLI2 transporter )
34 Proteins interacs with AT4G19210Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G18020 | PredictedAffinity Capture-MS | FSW = 0.3057
| Unknown | EMB2296 (EMBRYO DEFECTIVE 2296) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT3G09630 | PredictedAffinity Capture-MS | FSW = 0.1438
| Unknown | 60S RIBOSOMAL PROTEIN L4/L1 (RPL4A) |
AT5G02870 | Predictedtwo hybrid | FSW = 0.0483
| Unknown | 60S RIBOSOMAL PROTEIN L4/L1 (RPL4D) |
AT3G09200 | PredictedAffinity Capture-MS | FSW = 0.1481
| Unknown | 60S ACIDIC RIBOSOMAL PROTEIN P0 (RPP0B) |
AT2G17360 | PredictedAffinity Capture-MS | FSW = 0.1564
| Unknown | 40S RIBOSOMAL PROTEIN S4 (RPS4A) |
AT3G49010 | PredictedAffinity Capture-MS | FSW = 0.1661
| Unknown | ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G01100 | PredictedAffinity Capture-MS | FSW = 0.0412
| Unknown | 60S ACIDIC RIBOSOMAL PROTEIN P1 (RPP1A) |
AT1G07770 | PredictedAffinity Capture-MS | FSW = 0.2351
| Unknown | RPS15A (RIBOSOMAL PROTEIN S15A) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G66580 | PredictedAffinity Capture-MS | FSW = 0.2547
| Unknown | 60S RIBOSOMAL PROTEIN L10 (RPL10C) |
AT1G10510 | PredictedGene fusion method | FSW = 0.0493
| Unknown | EMB2004 (EMBRYO DEFECTIVE 2004) |
AT5G22440 | PredictedAffinity Capture-MS | FSW = 0.1988
| Unknown | 60S RIBOSOMAL PROTEIN L10A (RPL10AC) |
AT5G20290 | PredictedAffinity Capture-MS | FSW = 0.2020
| Unknown | 40S RIBOSOMAL PROTEIN S8 (RPS8A) |
AT2G09990 | PredictedAffinity Capture-MS | FSW = 0.2574
| Unknown | 40S RIBOSOMAL PROTEIN S16 (RPS16A) |
AT3G13580 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1925
| Unknown | 60S RIBOSOMAL PROTEIN L7 (RPL7D) |
AT4G34670 | PredictedAffinity Capture-MS | FSW = 0.2340
| Unknown | 40S RIBOSOMAL PROTEIN S3A (RPS3AB) |
AT2G04390 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0650
| Unknown | 40S RIBOSOMAL PROTEIN S17 (RPS17A) |
AT3G11400 | PredictedAffinity Capture-MS | FSW = 0.2451
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 3G / EIF3G |
AT3G28450 | PredictedGene fusion method | FSW = 0.0351
| Unknown | LEUCINE-RICH REPEAT TRANSMEMBRANE PROTEIN KINASE PUTATIVE |
AT1G76810 | PredictedAffinity Capture-MS | FSW = 0.3493
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 2 FAMILY PROTEIN / EIF-2 FAMILY PROTEIN |
AT3G53430 | PredictedAffinity Capture-MS | FSW = 0.1567
| Unknown | 60S RIBOSOMAL PROTEIN L12 (RPL12B) |
AT4G11420 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.1283
| Unknown | EIF3A (EUKARYOTIC TRANSLATION INITIATION FACTOR 3A) TRANSLATION INITIATION FACTOR |
AT1G77840 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.2664
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 5 PUTATIVE / EIF-5 PUTATIVE |
AT4G08350 | PredictedAffinity Capture-MS | FSW = 0.0100
| Unknown | GTA2 (GLOBAL TRANSCRIPTION FACTOR GROUP A2) STRUCTURAL CONSTITUENT OF RIBOSOME / TRANSCRIPTION ELONGATION REGULATOR/ TRANSCRIPTION FACTOR |
AT5G58420 | PredictedAffinity Capture-MS | FSW = 0.2510
| Unknown | 40S RIBOSOMAL PROTEIN S4 (RPS4D) |
AT5G59240 | PredictedAffinity Capture-MS | FSW = 0.3730
| Unknown | 40S RIBOSOMAL PROTEIN S8 (RPS8B) |
AT1G61580 | PredictedAffinity Capture-MS | FSW = 0.1748
| Unknown | RPL3B (R-PROTEIN L3 B) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT3G12280 | PredictedPhenotypic Enhancement | FSW = 0.0015
| Unknown | RBR1 (RETINOBLASTOMA-RELATED 1) TRANSCRIPTION FACTOR BINDING |
AT5G20030 | Predictedtwo hybrid | FSW = 0.0269
| Unknown | AGENET DOMAIN-CONTAINING PROTEIN |
AT1G55150 | PredictedAffinity Capture-MS | FSW = 0.0639
| Unknown | DEAD BOX RNA HELICASE PUTATIVE (RH20) |
AT2G46280 | PredictedAffinity Capture-MS | FSW = 0.0969
| Unknown | TRIP-1 (TGF-BETA RECEPTOR INTERACTING PROTEIN 1) NUCLEOTIDE BINDING / PROTEIN BINDING |
AT3G24830 | PredictedAffinity Capture-MS | FSW = 0.1853
| Unknown | 60S RIBOSOMAL PROTEIN L13A (RPL13AB) |
AT3G26500 | PredictedAffinity Capture-MS | FSW = 0.0117
| Unknown | LEUCINE-RICH REPEAT FAMILY PROTEIN |
AT3G56150 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1846
| Unknown | EIF3C (EUKARYOTIC TRANSLATION INITIATION FACTOR 3C) TRANSLATION INITIATION FACTOR |
AT3G13640 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2469
| Unknown | ATRLI1 TRANSPORTER |
Downloads
Quick help
Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454