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AT4G11420 - ( EIF3A (EUKARYOTIC TRANSLATION INITIATION FACTOR 3A) translation initiation factor )

70 Proteins interacs with AT4G11420

Locus	Method	FSW	Cellular Compartment Classification (C3)	Description
AT1G10840	Experimental two hybrid	FSW = 0.2186	Unknown	TIF3H1 TRANSLATION INITIATION FACTOR
AT4G14960	Predicted Reconstituted Complex interaction prediction	FSW = 0.0132	Class C: plasma membrane	TUA6 STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT2G33210	Predicted Affinity Capture-MS Co-expression	FSW = 0.0101	Class C: plasma membrane	HSP60-2 (HEAT SHOCK PROTEIN 60-2) ATP BINDING
AT2G17360	Predicted Affinity Capture-MS	FSW = 0.0450	Class C: plasma membrane	40S RIBOSOMAL PROTEIN S4 (RPS4A)
AT1G04820	Predicted Reconstituted Complex	FSW = 0.0112	Class C: plasma membrane	TUA4 STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT1G72730	Predicted Affinity Capture-MS	FSW = 0.0667	Class C: plasma membrane	EUKARYOTIC TRANSLATION INITIATION FACTOR 4A PUTATIVE / EIF-4A PUTATIVE
AT3G60770	Predicted Affinity Capture-MS Co-expression	FSW = 0.0275	Class C: plasma membrane	40S RIBOSOMAL PROTEIN S13 (RPS13A)
AT1G72370	Predicted Affinity Capture-MS Co-expression	FSW = 0.0483	Class C: plasma membrane	P40 STRUCTURAL CONSTITUENT OF RIBOSOME
AT5G20290	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0841	Class C: plasma membrane	40S RIBOSOMAL PROTEIN S8 (RPS8A)
AT5G56030	Predicted Affinity Capture-MS	FSW = 0.0289	Class C: plasma membrane	HSP81-2 (HEAT SHOCK PROTEIN 81-2) ATP BINDING
AT4G00100	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0289	Class C: plasma membrane	ATRPS13A (ARABIDOPSIS THALIANA RIBOSOMAL PROTEIN S13A) STRUCTURAL CONSTITUENT OF RIBOSOME
AT5G52640	Predicted Affinity Capture-MS	FSW = 0.0161	Class C: plasma membrane	ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING
AT5G60790	Predicted Affinity Capture-MS	FSW = 0.0246	Class C: plasma membrane	ATGCN1 TRANSPORTER
AT1G76810	Predicted Affinity Capture-MS	FSW = 0.1238	Class C: plasma membrane	EUKARYOTIC TRANSLATION INITIATION FACTOR 2 FAMILY PROTEIN / EIF-2 FAMILY PROTEIN
AT3G11400	Predicted Co-purification co-fractionation Co-fractionation Affinity Capture-Western Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-Western Co-purification Affinity Capture-MS co-fractionation Co-fractionation interaction prediction Co-expression	FSW = 0.3690	Class C: plasma membrane	EUKARYOTIC TRANSLATION INITIATION FACTOR 3G / EIF3G
AT3G25800	Predicted Affinity Capture-MS	FSW = 0.0216	Class C: plasma membrane	PP2AA2 (PROTEIN PHOSPHATASE 2A SUBUNIT A2) PROTEIN PHOSPHATASE TYPE 2A REGULATOR
AT1G13320	Predicted Affinity Capture-MS	FSW = 0.0058	Class C: plasma membrane	PP2AA3 (PROTEIN PHOSPHATASE 2A SUBUNIT A3) BINDING / PROTEIN PHOSPHATASE TYPE 2A REGULATOR
AT5G25754	Predicted Affinity Capture-MS	FSW = 0.1038	Class C: plasma membrane	UNKNOWN PROTEIN
AT3G57290	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Co-purification	FSW = 0.2427	Class C: plasma membrane	EIF3E (EUKARYOTIC TRANSLATION INITIATION FACTOR 3E) TRANSLATION INITIATION FACTOR
AT1G12920	Predicted Affinity Capture-MS interaction prediction	FSW = 0.0424	Class C: plasma membrane	ERF1-2 (EUKARYOTIC RELEASE FACTOR 1-2) TRANSLATION RELEASE FACTOR
AT5G20920	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction Co-expression	FSW = 0.1476	Class C: plasma membrane	EIF2 BETA TRANSLATION INITIATION FACTOR
AT5G09590	Predicted Affinity Capture-MS	FSW = 0.0081	Unknown	MTHSC70-2 (MITOCHONDRIAL HSP70 2) ATP BINDING
AT3G23990	Predicted Affinity Capture-MS	FSW = 0.0263	Unknown	HSP60 (HEAT SHOCK PROTEIN 60) ATP BINDING
AT4G37910	Predicted Affinity Capture-MS Co-expression	FSW = 0.0141	Unknown	MTHSC70-1 (MITOCHONDRIAL HEAT SHOCK PROTEIN 70-1) ATP BINDING
AT5G25780	Predicted interaction prediction Reconstituted Complex Reconstituted Complex Reconstituted Complex Co-purification Co-purification co-fractionation Co-fractionation Affinity Capture-Western Affinity Capture-Western Affinity Capture-Western Affinity Capture-Western Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Reconstituted Complex Affinity Capture-MS Co-purification Reconstituted Complex Affinity Capture-Western Affinity Capture-MS Co-purification Affinity Capture-MS in vitro in vivo in vitro Co-purification Affinity Capture-MS Reconstituted Complex co-fractionation Co-fractionation Phenotypic Enhancement interologs mapping interaction prediction	FSW = 0.3600	Unknown	EIF3B-2 (EUKARYOTIC TRANSLATION INITIATION FACTOR 3B-2) NUCLEIC ACID BINDING / PROTEIN BINDING / TRANSLATION INITIATION FACTOR
AT5G57870	Predicted in vivo in vitro	FSW = 0.0411	Unknown	EUKARYOTIC TRANSLATION INITIATION FACTOR 4F PUTATIVE / EIF-4F PUTATIVE
AT3G04770	Predicted Affinity Capture-MS	FSW = 0.0600	Unknown	RPSAB (40S RIBOSOMAL PROTEIN SA B) STRUCTURAL CONSTITUENT OF RIBOSOME
ATCG00160	Predicted Affinity Capture-MS	FSW = 0.0213	Unknown	CHLOROPLAST RIBOSOMAL PROTEIN S2
AT1G77840	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-Western Affinity Capture-Western Co-purification Affinity Capture-MS interaction prediction	FSW = 0.2354	Unknown	EUKARYOTIC TRANSLATION INITIATION FACTOR 5 PUTATIVE / EIF-5 PUTATIVE
AT2G39990	Predicted Affinity Capture-MS Co-purification	FSW = 0.1039	Unknown	EIF2 TRANSLATION INITIATION FACTOR
AT2G44680	Predicted Affinity Capture-MS Affinity Capture-MS interaction prediction	FSW = 0.0314	Unknown	CKB4 (CASEIN KINASE II BETA SUBUNIT 4) PROTEIN SERINE/THREONINE KINASE
AT3G10330	Predicted Affinity Capture-MS interaction prediction	FSW = 0.0438	Unknown	TRANSCRIPTION INITIATION FACTOR IIB-2 / GENERAL TRANSCRIPTION FACTOR TFIIB-2 (TFIIB2)
AT3G55620	Predicted Affinity Capture-MS interaction prediction	FSW = 0.0355	Unknown	EMB1624 (EMBRYO DEFECTIVE 1624) RIBOSOME BINDING / TRANSLATION INITIATION FACTOR
AT3G54610	Predicted Affinity Capture-MS	FSW = 0.0045	Unknown	GCN5 DNA BINDING / H3 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE
AT3G13920	Predicted Affinity Capture-MS	FSW = 0.0856	Unknown	EIF4A1 (EUKARYOTIC TRANSLATION INITIATION FACTOR 4A1) ATP-DEPENDENT HELICASE/ TRANSLATION INITIATION FACTOR
AT2G40290	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction Co-expression	FSW = 0.0482	Unknown	EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 1 PUTATIVE / EIF-2A PUTATIVE / EIF-2-ALPHA PUTATIVE
AT2G41630	Predicted Affinity Capture-MS	FSW = 0.0400	Unknown	TFIIB (TRANSCRIPTION FACTOR II B) RNA POLYMERASE II TRANSCRIPTION FACTOR/ PROTEIN BINDING / TRANSCRIPTION REGULATOR/ TRANSLATION INITIATION FACTOR/ ZINC ION BINDING
AT5G45710	Predicted Affinity Capture-MS	FSW = 0.0135	Unknown	RHA1 (ROOT HANDEDNESS 1) DNA BINDING / TRANSCRIPTION FACTOR
AT3G03600	Predicted Affinity Capture-MS	FSW = 0.0213	Unknown	RPS2 (RIBOSOMAL PROTEIN S2) STRUCTURAL CONSTITUENT OF RIBOSOME
AT4G30800	Predicted Affinity Capture-MS	FSW = 0.0609	Unknown	40S RIBOSOMAL PROTEIN S11 (RPS11B)
AT5G59240	Predicted Affinity Capture-MS	FSW = 0.0855	Unknown	40S RIBOSOMAL PROTEIN S8 (RPS8B)
AT2G02080	Predicted two hybrid	FSW = 0.0169	Unknown	ATIDD4 (ARABIDOPSIS THALIANA INDETERMINATE(ID)-DOMAIN 4) TRANSCRIPTION FACTOR
AT1G66070	Predicted in vivo in vitro Co-purification Co-expression	FSW = 0.0729	Unknown	TRANSLATION INITIATION FACTOR-RELATED
AT2G46280	Predicted Co-purification co-fractionation Co-fractionation Affinity Capture-Western Affinity Capture-Western Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-Western Affinity Capture-MS Affinity Capture-MS Co-purification Affinity Capture-MS Affinity Capture-MS Co-purification in vivo Affinity Capture-Western co-fractionation Co-fractionation interaction prediction	FSW = 0.2339	Unknown	TRIP-1 (TGF-BETA RECEPTOR INTERACTING PROTEIN 1) NUCLEOTIDE BINDING / PROTEIN BINDING
AT2G46290	Predicted Affinity Capture-MS Co-purification in vivo	FSW = 0.1047	Unknown	EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT 2 PUTATIVE / EIF-3 BETA PUTATIVE / EIF3I PUTATIVE
AT3G22860	Predicted Reconstituted Complex Co-purification Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Co-purification Affinity Capture-MS Affinity Capture-Western Reconstituted Complex	FSW = 0.3360	Unknown	TIF3C2 TRANSLATION INITIATION FACTOR
AT4G38710	Predicted in vitro in vivo	FSW = 0.0134	Unknown	GLYCINE-RICH PROTEIN
AT5G06000	Predicted in vivo in vitro Co-purification Co-expression	FSW = 0.2669	Unknown	EIF3G2 RNA BINDING / TRANSLATION INITIATION FACTOR
AT5G27640	Predicted in vitro in vivo in vivo in vitro Co-purification	FSW = 0.0297	Unknown	TIF3B1 (TRANSLATION INITIATION FACTOR 3B1) NUCLEIC ACID BINDING / TRANSLATION INITIATION FACTOR
AT5G37475	Predicted in vitro in vivo Co-purification	FSW = 0.0702	Unknown	TRANSLATION INITIATION FACTOR-RELATED
AT5G54940	Predicted Affinity Capture-MS	FSW = 0.1019	Unknown	EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE
AT4G20980	Predicted Affinity Capture-MS Co-purification	FSW = 0.1558	Unknown	EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT 7 PUTATIVE / EIF-3 ZETA PUTATIVE / EIF3D PUTATIVE
AT4G33250	Predicted Affinity Capture-MS Co-purification in vitro Co-expression	FSW = 0.2570	Unknown	EIF3K (EUKARYOTIC TRANSLATION INITIATION FACTOR 3K) TRANSLATION INITIATION FACTOR
AT5G15610	Predicted Affinity Capture-MS	FSW = 0.1268	Unknown	PROTEASOME FAMILY PROTEIN
AT5G44320	Predicted Affinity Capture-MS Co-purification	FSW = 0.1350	Unknown	EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT 7 PUTATIVE / EIF-3 ZETA PUTATIVE / EIF3D PUTATIVE
AT1G04170	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Co-expression	FSW = 0.1517	Unknown	EIF2 GAMMA TRANSLATION FACTOR NUCLEIC ACID BINDING / TRANSLATION INITIATION FACTOR
AT1G54290	Predicted Affinity Capture-Western Affinity Capture-Western Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction	FSW = 0.0615	Unknown	EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE
AT3G56150	Predicted interaction prediction Affinity Capture-MS Reconstituted Complex Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Reconstituted Complex Co-purification Affinity Capture-Western interologs mapping Co-expression	FSW = 0.4281	Unknown	EIF3C (EUKARYOTIC TRANSLATION INITIATION FACTOR 3C) TRANSLATION INITIATION FACTOR
AT2G23070	Predicted Affinity Capture-MS	FSW = 0.0076	Unknown	CASEIN KINASE II ALPHA CHAIN PUTATIVE
AT3G05090	Predicted Affinity Capture-MS	FSW = 0.0779	Unknown	TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT3G09100	Predicted Affinity Capture-MS interaction prediction	FSW = 0.0399	Unknown	MRNA CAPPING ENZYME FAMILY PROTEIN
AT4G12460	Predicted Affinity Capture-MS	FSW = 0.0785	Unknown	ORP2B (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 2B) OXYSTEROL BINDING
AT4G22540	Predicted Affinity Capture-MS	FSW = 0.0270	Unknown	ORP2A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 2A) OXYSTEROL BINDING / PHOSPHOINOSITIDE BINDING
AT5G07760	Predicted interologs mapping	FSW = 0.0371	Unknown	FORMIN HOMOLOGY 2 DOMAIN-CONTAINING PROTEIN / FH2 DOMAIN-CONTAINING PROTEIN
AT5G56740	Predicted Affinity Capture-MS interaction prediction Co-expression	FSW = 0.0493	Unknown	HAG2 (HISTONE ACETYLTRANSFERASE OF THE GNAT FAMILY 2) H4 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE
AT4G19210	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction	FSW = 0.1283	Unknown	ATRLI2 TRANSPORTER
AT3G02200	Predicted Affinity Capture-MS	FSW = 0.1409	Unknown	PROTEASOME FAMILY PROTEIN
AT1G36730	Predicted Affinity Capture-Western Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-Western Co-purification	FSW = 0.1749	Unknown	EUKARYOTIC TRANSLATION INITIATION FACTOR 5 PUTATIVE / EIF-5 PUTATIVE
AT1G13170	Predicted Affinity Capture-MS	FSW = 0.0183	Unknown	ORP1D (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1D) OXYSTEROL BINDING
AT3G13640	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0953	Unknown	ATRLI1 TRANSPORTER

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from

Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment

Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment

Class C: Same as Class A but the PPI is predicted

Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB

Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

Welcome to AtPIN

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AT4G11420 - ( EIF3A (EUKARYOTIC TRANSLATION INITIATION FACTOR 3A) translation initiation factor )

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Fasta sequences:

Quick help

FSW

C3

PEP

How to cite