Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G06000 - ( EIF3G2 RNA binding / translation initiation factor )
13 Proteins interacs with AT5G06000Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G57990 | PredictedSynthetic Lethality | FSW = 0.0123
| Unknown | UNKNOWN PROTEIN |
AT3G11400 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2074
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 3G / EIF3G |
AT4G11420 | Predictedin vivoin vitroCo-purificationCo-expression | FSW = 0.2669
| Unknown | EIF3A (EUKARYOTIC TRANSLATION INITIATION FACTOR 3A) TRANSLATION INITIATION FACTOR |
AT1G77840 | Predictedin vivoAffinity Capture-MS | FSW = 0.1350
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 5 PUTATIVE / EIF-5 PUTATIVE |
AT2G05720 | PredictedGene fusion method | FSW = 0.0556
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT1G10840 | Predictedin vivoin vitroAffinity Capture-MSCo-expression | FSW = 0.3273
| Unknown | TIF3H1 TRANSLATION INITIATION FACTOR |
AT1G36730 | Predictedin vivoAffinity Capture-MS | FSW = 0.1385
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 5 PUTATIVE / EIF-5 PUTATIVE |
AT3G22860 | Predictedin vitroin vivoAffinity Capture-MSAffinity Capture-Western | FSW = 0.2238
| Unknown | TIF3C2 TRANSLATION INITIATION FACTOR |
AT4G20980 | Predictedin vivoin vitroCo-expression | FSW = 0.1693
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT 7 PUTATIVE / EIF-3 ZETA PUTATIVE / EIF3D PUTATIVE |
AT4G33250 | PredictedReconstituted Complexin vitroCo-expression | FSW = 0.4242
| Unknown | EIF3K (EUKARYOTIC TRANSLATION INITIATION FACTOR 3K) TRANSLATION INITIATION FACTOR |
AT5G54940 | PredictedAffinity Capture-MS | FSW = 0.1279
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE |
AT5G44320 | Predictedin vitroin vivo | FSW = 0.2506
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT 7 PUTATIVE / EIF-3 ZETA PUTATIVE / EIF3D PUTATIVE |
AT3G56150 | PredictedAffinity Capture-MSAffinity Capture-Westernin vitroin vivoCo-expression | FSW = 0.2155
| Unknown | EIF3C (EUKARYOTIC TRANSLATION INITIATION FACTOR 3C) TRANSLATION INITIATION FACTOR |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454