Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G77840 - ( eukaryotic translation initiation factor 5 putative / eIF-5 putative )
33 Proteins interacs with AT1G77840| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT3G10330
   | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.1005
| Class C:nucleuscytosol | TRANSCRIPTION INITIATION FACTOR IIB-2 / GENERAL TRANSCRIPTION FACTOR TFIIB-2 (TFIIB2) |
| AT4G31700
| PredictedAffinity Capture-MS | FSW = 0.1559
| Class C:nucleus | RPS6 (RIBOSOMAL PROTEIN S6) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT5G15200
| PredictedAffinity Capture-MS | FSW = 0.0996
| Class C:nucleus | 40S RIBOSOMAL PROTEIN S9 (RPS9B) |
| AT3G49010
| PredictedAffinity Capture-MS | FSW = 0.1296
| Class C:nucleus | ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT3G58510
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2213
| Class C:nucleus | DEAD BOX RNA HELICASE PUTATIVE (RH11) |
| AT2G40290
| PredictedAffinity Capture-MSAffinity Capture-WesternAffinity Capture-WesternReconstituted ComplexAffinity Capture-MS | FSW = 0.0640
| Class C:nucleus | EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 1 PUTATIVE / EIF-2A PUTATIVE / EIF-2-ALPHA PUTATIVE |
| AT4G08350
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0367
| Class C:nucleus | GTA2 (GLOBAL TRANSCRIPTION FACTOR GROUP A2) STRUCTURAL CONSTITUENT OF RIBOSOME / TRANSCRIPTION ELONGATION REGULATOR/ TRANSCRIPTION FACTOR |
| AT2G17360
| PredictedAffinity Capture-MS | FSW = 0.1239
| Unknown | 40S RIBOSOMAL PROTEIN S4 (RPS4A) |
| AT2G37270
| PredictedAffinity Capture-MS | FSW = 0.1330
| Unknown | ATRPS5B (RIBOSOMAL PROTEIN 5B) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT5G27850
| PredictedAffinity Capture-MS | FSW = 0.1466
| Unknown | 60S RIBOSOMAL PROTEIN L18 (RPL18C) |
| AT5G25780
| PredictedAffinity Capture-MSco-fractionationCo-fractionationAffinity Capture-MSAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternCo-purificationReconstituted Complexco-fractionationCo-fractionationinterologs mappinginteraction prediction | FSW = 0.2944
| Unknown | EIF3B-2 (EUKARYOTIC TRANSLATION INITIATION FACTOR 3B-2) NUCLEIC ACID BINDING / PROTEIN BINDING / TRANSLATION INITIATION FACTOR |
| AT1G48830
| PredictedAffinity Capture-MS | FSW = 0.1357
| Unknown | 40S RIBOSOMAL PROTEIN S7 (RPS7A) |
| AT3G13580
| PredictedAffinity Capture-MS | FSW = 0.1328
| Unknown | 60S RIBOSOMAL PROTEIN L7 (RPL7D) |
| AT3G11400
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.3466
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 3G / EIF3G |
| AT1G76810 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.2475
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 2 FAMILY PROTEIN / EIF-2 FAMILY PROTEIN |
| AT5G20920
| PredictedReconstituted ComplexAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-Westernin vitroin vitroin vivoin vivoin vivoin vitroAffinity Capture-MSReconstituted Complexfar western blottinginterologs mappingPhenotypic Suppressioninteraction prediction | FSW = 0.1983
| Unknown | EIF2 BETA TRANSLATION INITIATION FACTOR |
| AT4G11420
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-WesternCo-purificationAffinity Capture-MSinteraction prediction | FSW = 0.2354
| Unknown | EIF3A (EUKARYOTIC TRANSLATION INITIATION FACTOR 3A) TRANSLATION INITIATION FACTOR |
| AT3G53870
| PredictedAffinity Capture-MS | FSW = 0.1111
| Unknown | 40S RIBOSOMAL PROTEIN S3 (RPS3B) |
| AT1G50920
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0793
| Unknown | GTP-BINDING PROTEIN-RELATED |
| AT4G30800
| PredictedAffinity Capture-MS | FSW = 0.1570
| Unknown | 40S RIBOSOMAL PROTEIN S11 (RPS11B) |
| AT5G06000
| Predictedin vivoAffinity Capture-MS | FSW = 0.1350
| Unknown | EIF3G2 RNA BINDING / TRANSLATION INITIATION FACTOR |
| AT1G04170
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-WesternReconstituted ComplexAffinity Capture-MS | FSW = 0.2147
| Unknown | EIF2 GAMMA TRANSLATION FACTOR NUCLEIC ACID BINDING / TRANSLATION INITIATION FACTOR |
| AT1G54290
| PredictedAffinity Capture-MSReconstituted ComplexReconstituted ComplexReconstituted Complexco-fractionationCo-fractionationReconstituted ComplexAffinity Capture-WesternAffinity Capture-WesternReconstituted ComplexAffinity Capture-MSco-fractionationCo-fractionationSynthetic LethalityPhenotypic Suppressioninterologs mappinginteraction predictionCo-expression | FSW = 0.0957
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE |
| AT2G46280
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSco-fractionationCo-fractionationAffinity Capture-WesternAffinity Capture-Westernco-fractionationCo-fractionationAffinity Capture-MSReconstituted Complexinteraction prediction | FSW = 0.2016
| Unknown | TRIP-1 (TGF-BETA RECEPTOR INTERACTING PROTEIN 1) NUCLEOTIDE BINDING / PROTEIN BINDING |
| AT3G56150
| PredictedAffinity Capture-MSReconstituted ComplexAffinity Capture-MSReconstituted ComplexReconstituted ComplexReconstituted ComplexReconstituted ComplexAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MStwo hybridCo-purificationinterologs mappinginteraction prediction | FSW = 0.3303
| Unknown | EIF3C (EUKARYOTIC TRANSLATION INITIATION FACTOR 3C) TRANSLATION INITIATION FACTOR |
| AT3G60240
| PredictedReconstituted Complexinteraction prediction | FSW = 0.0324
| Unknown | EIF4G (EUKARYOTIC TRANSLATION INITIATION FACTOR 4G) TRANSLATION INITIATION FACTOR |
| AT4G19210
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.2664
| Unknown | ATRLI2 TRANSPORTER |
| AT2G27200
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0675
| Unknown | GTP-BINDING FAMILY PROTEIN |
| AT2G31260
| PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0050
| Unknown | APG9 (AUTOPHAGY 9) |
| AT3G07300
| PredictedReconstituted Complex | FSW = 0.0750
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 2B FAMILY PROTEIN / EIF-2B FAMILY PROTEIN |
| AT3G24830
| PredictedAffinity Capture-MS | FSW = 0.1557
| Unknown | 60S RIBOSOMAL PROTEIN L13A (RPL13AB) |
| AT4G28200
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0312
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RNA PROCESSING LOCATED IN INTRACELLULAR EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S RNA-PROCESSING PROTEIN HAT HELIX (INTERPROIPR003107) U3 SMALL NUCLEOLAR RNA-ASSOCIATED PROTEIN 6 (INTERPROIPR013949) HAS 352 BLAST HITS TO 342 PROTEINS IN 144 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 111 FUNGI - 130 PLANTS - 24 VIRUSES - 0 OTHER EUKARYOTES - 87 (SOURCE NCBI BLINK) |
| AT5G14520
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0336
| Unknown | PESCADILLO-RELATED |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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