Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G27850 - ( 60S ribosomal protein L18 (RPL18C) )
51 Proteins interacs with AT5G27850| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT1G35670
   | Experimentaltwo hybrid | FSW = 0.0064
| Class A:plasma membraneClass B:vacuolenucleuscytosolClass D:plastid (p = 0.78)cytosol (p = 0.67) | ATCDPK2 (CALCIUM-DEPENDENT PROTEIN KINASE 2) CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE |
| AT2G18020
| PredictedAffinity Capture-MS | FSW = 0.2511
| Class C:vacuoleplasma membrane | EMB2296 (EMBRYO DEFECTIVE 2296) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT3G05590
| PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.1273
| Class C:vacuoleplasma membrane | RPL18 (RIBOSOMAL PROTEIN L18) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT3G09630
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1735
| Class C:vacuoleplasma membrane | 60S RIBOSOMAL PROTEIN L4/L1 (RPL4A) |
| AT3G09200
| PredictedAffinity Capture-MS | FSW = 0.1232
| Class C:vacuoleplasma membrane | 60S ACIDIC RIBOSOMAL PROTEIN P0 (RPP0B) |
| AT2G17360
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1006
| Class C:vacuoleplasma membrane | 40S RIBOSOMAL PROTEIN S4 (RPS4A) |
| AT1G56070
| PredictedAffinity Capture-MS | FSW = 0.0244
| Class C:vacuoleplasma membrane | LOS1 COPPER ION BINDING / TRANSLATION ELONGATION FACTOR/ TRANSLATION FACTOR NUCLEIC ACID BINDING |
| AT3G49010
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1944
| Class C:vacuoleplasma membrane | ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT1G66580
| PredictedAffinity Capture-MS | FSW = 0.1764
| Class C:vacuole | 60S RIBOSOMAL PROTEIN L10 (RPL10C) |
| AT5G25780
| PredictedAffinity Capture-MS | FSW = 0.0627
| Class C:vacuole | EIF3B-2 (EUKARYOTIC TRANSLATION INITIATION FACTOR 3B-2) NUCLEIC ACID BINDING / PROTEIN BINDING / TRANSLATION INITIATION FACTOR |
| AT3G58510
| PredictedAffinity Capture-MS | FSW = 0.0972
| Class C:plasma membrane | DEAD BOX RNA HELICASE PUTATIVE (RH11) |
| AT5G12250
| PredictedAffinity Capture-MS | FSW = 0.0111
| Class C:plasma membrane | TUB6 (BETA-6 TUBULIN) STRUCTURAL CONSTITUENT OF CYTOSKELETON |
| AT5G39740
| PredictedAffinity Capture-MS | FSW = 0.1916
| Class C:plasma membrane | 60S RIBOSOMAL PROTEIN L5 (RPL5B) |
| AT3G11964 | PredictedAffinity Capture-MS | FSW = 0.0966
| Class C:plasma membrane | RNA BINDING |
| AT5G26830
| PredictedAffinity Capture-MS | FSW = 0.0327
| Class C:plasma membrane | THREONYL-TRNA SYNTHETASE / THREONINE--TRNA LIGASE (THRRS) |
| AT5G52640
| Predictedtwo hybrid | FSW = 0.0106
| Class C:plasma membrane | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
| AT2G37600
| PredictedAffinity Capture-MS | FSW = 0.2411
| Class C:plasma membrane | 60S RIBOSOMAL PROTEIN L36 (RPL36A) |
| AT1G74270
| PredictedAffinity Capture-MS | FSW = 0.1376
| Class C:plasma membrane | 60S RIBOSOMAL PROTEIN L35A (RPL35AC) |
| AT3G53870
| PredictedAffinity Capture-MS | FSW = 0.1226
| Class C:plasma membrane | 40S RIBOSOMAL PROTEIN S3 (RPS3B) |
| AT1G80350
| Predictedtwo hybrid | FSW = 0.0148
| Unknown | ERH3 (ECTOPIC ROOT HAIR 3) ATP BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
| AT1G29900
| PredictedAffinity Capture-MS | FSW = 0.0388
| Unknown | CARB (CARBAMOYL PHOSPHATE SYNTHETASE B) ATP BINDING / CARBAMOYL-PHOSPHATE SYNTHASE/ CATALYTIC |
| AT3G13580
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2714
| Unknown | 60S RIBOSOMAL PROTEIN L7 (RPL7D) |
| AT5G53480
| PredictedAffinity Capture-MS | FSW = 0.0436
| Unknown | IMPORTIN BETA-2 PUTATIVE |
| AT3G10050
| PredictedAffinity Capture-MS | FSW = 0.0408
| Unknown | OMR1 (L-O-METHYLTHREONINE RESISTANT 1) L-THREONINE AMMONIA-LYASE |
| AT1G77840
| PredictedAffinity Capture-MS | FSW = 0.1466
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 5 PUTATIVE / EIF-5 PUTATIVE |
| AT3G55620
| PredictedAffinity Capture-MS | FSW = 0.2060
| Unknown | EMB1624 (EMBRYO DEFECTIVE 1624) RIBOSOME BINDING / TRANSLATION INITIATION FACTOR |
| AT4G17390
| PredictedAffinity Capture-MS | FSW = 0.2807
| Unknown | 60S RIBOSOMAL PROTEIN L15 (RPL15B) |
| AT1G72440
| PredictedAffinity Capture-MS | FSW = 0.1668
| Unknown | EDA25 (EMBRYO SAC DEVELOPMENT ARREST 25) |
| AT3G18130
| PredictedAffinity Capture-MS | FSW = 0.0296
| Unknown | RACK1C_AT (RECEPTOR FOR ACTIVATED C KINASE 1 C) NUCLEOTIDE BINDING |
| AT4G31180
| PredictedAffinity Capture-MS | FSW = 0.0627
| Unknown | ASPARTYL-TRNA SYNTHETASE PUTATIVE / ASPARTATE--TRNA LIGASE PUTATIVE |
| AT1G67730
| Predictedtwo hybrid | FSW = 0.0117
| Unknown | YBR159 KETOREDUCTASE/ OXIDOREDUCTASE |
| AT4G17620
| PredictedAffinity Capture-MS | FSW = 0.1405
| Unknown | GLYCINE-RICH PROTEIN |
| AT1G50920
| PredictedAffinity Capture-MS | FSW = 0.1937
| Unknown | GTP-BINDING PROTEIN-RELATED |
| AT1G61580
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2042
| Unknown | RPL3B (R-PROTEIN L3 B) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT5G53360
| Predictedtwo hybrid | FSW = 0.0059
| Unknown | SEVEN IN ABSENTIA (SINA) FAMILY PROTEIN |
| AT5G35430
| Predictedtwo hybrid | FSW = 0.0364
| Unknown | BINDING |
| AT1G52980
| PredictedAffinity Capture-MS | FSW = 0.1856
| Unknown | GTP-BINDING FAMILY PROTEIN |
| AT2G18220
| PredictedAffinity Capture-MS | FSW = 0.1841
| Unknown | INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S UNCHARACTERISED PROTEIN FAMILY UPF0120 (INTERPROIPR005343) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS RBL (REBELOTE) (TAIRAT3G555101) HAS 4846 BLAST HITS TO 3236 PROTEINS IN 249 SPECIES ARCHAE - 2 BACTERIA - 127 METAZOA - 2049 FUNGI - 594 PLANTS - 200 VIRUSES - 69 OTHER EUKARYOTES - 1805 (SOURCE NCBI BLINK) |
| AT2G39770
| PredictedAffinity Capture-MS | FSW = 0.1267
| Unknown | CYT1 (CYTOKINESIS DEFECTIVE 1) MANNOSE-1-PHOSPHATE GUANYLYLTRANSFERASE/ NUCLEOTIDYLTRANSFERASE |
| AT3G24090
| PredictedAffinity Capture-MS | FSW = 0.0176
| Unknown | GLUTAMINE-FRUCTOSE-6-PHOSPHATE TRANSAMINASE (ISOMERIZING)/ SUGAR BINDING / TRANSAMINASE |
| AT3G55280
| PredictedAffinity Capture-MS | FSW = 0.2459
| Unknown | RPL23AB (RIBOSOMAL PROTEIN L23AB) RNA BINDING / NUCLEOTIDE BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT4G27640
| PredictedAffinity Capture-MS | FSW = 0.0314
| Unknown | IMPORTIN BETA-2 SUBUNIT FAMILY PROTEIN |
| AT5G06360
| PredictedAffinity Capture-MS | FSW = 0.1241
| Unknown | RIBOSOMAL PROTEIN S8E FAMILY PROTEIN |
| AT1G18830 | PredictedAffinity Capture-MS | FSW = 0.0391
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
| AT1G59760
| PredictedAffinity Capture-MS | FSW = 0.0528
| Unknown | ATP-DEPENDENT RNA HELICASE PUTATIVE |
| AT2G21440
| PredictedAffinity Capture-MS | FSW = 0.1368
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
| AT3G24830
| PredictedAffinity Capture-MS | FSW = 0.2687
| Unknown | 60S RIBOSOMAL PROTEIN L13A (RPL13AB) |
| AT3G56510
| PredictedAffinity Capture-MS | FSW = 0.0805
| Unknown | TBP-BINDING PROTEIN PUTATIVE |
| AT3G60860
| PredictedSynthetic Lethality | FSW = 0.0759
| Unknown | GUANINE NUCLEOTIDE EXCHANGE FAMILY PROTEIN |
| AT5G65900
| PredictedAffinity Capture-MS | FSW = 0.2101
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
| AT2G47570
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.0091
| Unknown | 60S RIBOSOMAL PROTEIN L18 (RPL18A) |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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