Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G55280 - ( RPL23AB (RIBOSOMAL PROTEIN L23AB) RNA binding / nucleotide binding / structural constituent of ribosome )
114 Proteins interacs with AT3G55280Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G04920 | PredictedAffinity Capture-MS | FSW = 0.5051
| Unknown | 40S RIBOSOMAL PROTEIN S24 (RPS24A) |
AT3G49910 | PredictedAffinity Capture-MS | FSW = 0.3982
| Unknown | 60S RIBOSOMAL PROTEIN L26 (RPL26A) |
AT2G18020 | PredictedAffinity Capture-MS | FSW = 0.5004
| Unknown | EMB2296 (EMBRYO DEFECTIVE 2296) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT4G31700 | PredictedAffinity Capture-MS | FSW = 0.3373
| Unknown | RPS6 (RIBOSOMAL PROTEIN S6) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT3G09630 | PredictedAffinity Capture-MS | FSW = 0.3800
| Unknown | 60S RIBOSOMAL PROTEIN L4/L1 (RPL4A) |
AT2G42740 | PredictedAffinity Capture-MS | FSW = 0.5556
| Unknown | RPL16A STRUCTURAL CONSTITUENT OF RIBOSOME |
AT3G09200 | PredictedAffinity Capture-MS | FSW = 0.2860
| Unknown | 60S ACIDIC RIBOSOMAL PROTEIN P0 (RPP0B) |
AT2G17360 | PredictedAffinity Capture-MS | FSW = 0.1625
| Unknown | 40S RIBOSOMAL PROTEIN S4 (RPS4A) |
AT2G47610 | PredictedAffinity Capture-MS | FSW = 0.4153
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AA) |
AT5G15200 | PredictedAffinity Capture-MS | FSW = 0.3014
| Unknown | 40S RIBOSOMAL PROTEIN S9 (RPS9B) |
AT1G33140 | PredictedAffinity Capture-MS | FSW = 0.4150
| Unknown | PGY2 (PIGGYBACK2) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G67430 | PredictedAffinity Capture-MS | FSW = 0.5518
| Unknown | 60S RIBOSOMAL PROTEIN L17 (RPL17B) |
AT3G49010 | PredictedAffinity Capture-MS | FSW = 0.4628
| Unknown | ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT2G37270 | PredictedAffinity Capture-MS | FSW = 0.3781
| Unknown | ATRPS5B (RIBOSOMAL PROTEIN 5B) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT5G27850 | PredictedAffinity Capture-MS | FSW = 0.2459
| Unknown | 60S RIBOSOMAL PROTEIN L18 (RPL18C) |
AT2G34480 | PredictedAffinity Capture-MS | FSW = 0.3379
| Unknown | 60S RIBOSOMAL PROTEIN L18A (RPL18AB) |
AT1G07770 | PredictedAffinity Capture-MS | FSW = 0.3512
| Unknown | RPS15A (RIBOSOMAL PROTEIN S15A) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT2G21580 | PredictedAffinity Capture-MS | FSW = 0.1231
| Unknown | 40S RIBOSOMAL PROTEIN S25 (RPS25B) |
AT1G66580 | PredictedAffinity Capture-MS | FSW = 0.4735
| Unknown | 60S RIBOSOMAL PROTEIN L10 (RPL10C) |
AT1G34030 | PredictedAffinity Capture-MS | FSW = 0.2059
| Unknown | 40S RIBOSOMAL PROTEIN S18 (RPS18B) |
AT5G22440 | PredictedAffinity Capture-MS | FSW = 0.4965
| Unknown | 60S RIBOSOMAL PROTEIN L10A (RPL10AC) |
AT4G01370 | Predictedbiochemical | FSW = 0.0013
| Unknown | ATMPK4 (ARABIDOPSIS THALIANA MAP KINASE 4) MAP KINASE/ KINASE |
AT5G20290 | PredictedAffinity Capture-MS | FSW = 0.2612
| Unknown | 40S RIBOSOMAL PROTEIN S8 (RPS8A) |
AT1G48830 | PredictedAffinity Capture-MS | FSW = 0.4398
| Unknown | 40S RIBOSOMAL PROTEIN S7 (RPS7A) |
AT2G09990 | PredictedAffinity Capture-MS | FSW = 0.5145
| Unknown | 40S RIBOSOMAL PROTEIN S16 (RPS16A) |
AT1G51040 | PredictedAffinity Capture-MSAffinity Capture-WesternReconstituted Complex | FSW = 0.0395
| Unknown | PHOSPHATIDYLINOSITOL 4-KINASE PUTATIVE |
AT3G13580 | PredictedAffinity Capture-MS | FSW = 0.5710
| Unknown | 60S RIBOSOMAL PROTEIN L7 (RPL7D) |
AT4G34670 | PredictedAffinity Capture-MS | FSW = 0.4611
| Unknown | 40S RIBOSOMAL PROTEIN S3A (RPS3AB) |
AT2G27710 | PredictedAffinity Capture-MS | FSW = 0.4129
| Unknown | 60S ACIDIC RIBOSOMAL PROTEIN P2 (RPP2B) |
AT3G11510 | PredictedAffinity Capture-MS | FSW = 0.4487
| Unknown | 40S RIBOSOMAL PROTEIN S14 (RPS14B) |
AT5G39740 | PredictedAffinity Capture-MS | FSW = 0.4264
| Unknown | 60S RIBOSOMAL PROTEIN L5 (RPL5B) |
AT2G39460 | PredictedGene fusion methodCo-expression | FSW = 0.2136
| Unknown | RPL23AA (RIBOSOMAL PROTEIN L23AA) RNA BINDING / NUCLEOTIDE BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
AT2G37190 | PredictedAffinity Capture-MS | FSW = 0.4129
| Unknown | 60S RIBOSOMAL PROTEIN L12 (RPL12A) |
AT4G00100 | PredictedAffinity Capture-MS | FSW = 0.3935
| Unknown | ATRPS13A (ARABIDOPSIS THALIANA RIBOSOMAL PROTEIN S13A) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT5G52640 | Predictedtwo hybrid | FSW = 0.0208
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT2G37600 | PredictedAffinity Capture-MS | FSW = 0.5569
| Unknown | 60S RIBOSOMAL PROTEIN L36 (RPL36A) |
AT5G17310 | PredictedAffinity Capture-MS | FSW = 0.0434
| Unknown | UTP--GLUCOSE-1-PHOSPHATE URIDYLYLTRANSFERASE PUTATIVE / UDP-GLUCOSE PYROPHOSPHORYLASE PUTATIVE / UGPASE PUTATIVE |
AT5G46430 | PredictedAffinity Capture-MS | FSW = 0.4135
| Unknown | 60S RIBOSOMAL PROTEIN L32 (RPL32B) |
AT1G74270 | PredictedAffinity Capture-MS | FSW = 0.2189
| Unknown | 60S RIBOSOMAL PROTEIN L35A (RPL35AC) |
AT1G70600 | PredictedAffinity Capture-MS | FSW = 0.6264
| Unknown | STRUCTURAL CONSTITUENT OF RIBOSOME |
AT4G02230 | PredictedAffinity Capture-MS | FSW = 0.4073
| Unknown | 60S RIBOSOMAL PROTEIN L19 (RPL19C) |
AT3G53870 | PredictedAffinity Capture-MS | FSW = 0.3406
| Unknown | 40S RIBOSOMAL PROTEIN S3 (RPS3B) |
AT4G15000 | PredictedAffinity Capture-MS | FSW = 0.5018
| Unknown | 60S RIBOSOMAL PROTEIN L27 (RPL27C) |
AT2G40360 | PredictedAffinity Capture-MS | FSW = 0.1817
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT3G08720 | Predictedtwo hybrid | FSW = 0.0074
| Unknown | S6K2 (ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2) KINASE/ PROTEIN KINASE |
AT5G04600 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3716
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT1G74060 | PredictedAffinity Capture-MS | FSW = 0.4314
| Unknown | 60S RIBOSOMAL PROTEIN L6 (RPL6B) |
AT3G06700 | PredictedAffinity Capture-MS | FSW = 0.3434
| Unknown | 60S RIBOSOMAL PROTEIN L29 (RPL29A) |
AT3G58660 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3896
| Unknown | 60S RIBOSOMAL PROTEIN-RELATED |
AT5G37720 | PredictedAffinity Capture-MS | FSW = 0.0514
| Unknown | RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE |
AT3G55620 | PredictedAffinity Capture-MS | FSW = 0.2537
| Unknown | EMB1624 (EMBRYO DEFECTIVE 1624) RIBOSOME BINDING / TRANSLATION INITIATION FACTOR |
AT3G23620 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2847
| Unknown | BRIX DOMAIN-CONTAINING PROTEIN |
AT4G17390 | PredictedAffinity Capture-MS | FSW = 0.5596
| Unknown | 60S RIBOSOMAL PROTEIN L15 (RPL15B) |
AT4G29390 | PredictedAffinity Capture-MS | FSW = 0.3188
| Unknown | 40S RIBOSOMAL PROTEIN S30 (RPS30B) |
AT3G16810 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3106
| Unknown | APUM24 (ARABIDOPSIS PUMILIO 24) RNA BINDING / BINDING |
AT5G55920 | PredictedAffinity Capture-MS | FSW = 0.3150
| Unknown | NUCLEOLAR PROTEIN PUTATIVE |
AT3G18130 | PredictedAffinity Capture-MS | FSW = 0.0580
| Unknown | RACK1C_AT (RECEPTOR FOR ACTIVATED C KINASE 1 C) NUCLEOTIDE BINDING |
AT2G19385 | PredictedAffinity Capture-MS | FSW = 0.0865
| Unknown | ZINC ION BINDING |
AT3G53020 | PredictedAffinity Capture-MS | FSW = 0.3423
| Unknown | STV1 (SHORT VALVE1) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT5G58420 | PredictedAffinity Capture-MS | FSW = 0.3701
| Unknown | 40S RIBOSOMAL PROTEIN S4 (RPS4D) |
AT4G33720 | PredictedAffinity Capture-Western | FSW = 0.0298
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT1G76400 | PredictedAffinity Capture-MS | FSW = 0.0347
| Unknown | RIBOPHORIN I FAMILY PROTEIN |
AT3G16050 | PredictedAffinity Capture-MS | FSW = 0.0143
| Unknown | A37 PROTEIN HETERODIMERIZATION |
AT5G59240 | PredictedAffinity Capture-MS | FSW = 0.2821
| Unknown | 40S RIBOSOMAL PROTEIN S8 (RPS8B) |
AT5G09500 | PredictedAffinity Capture-MS | FSW = 0.3977
| Unknown | 40S RIBOSOMAL PROTEIN S15 (RPS15C) |
AT1G50920 | PredictedAffinity Capture-MS | FSW = 0.3865
| Unknown | GTP-BINDING PROTEIN-RELATED |
AT5G02960 | PredictedAffinity Capture-MS | FSW = 0.1744
| Unknown | 40S RIBOSOMAL PROTEIN S23 (RPS23B) |
AT3G22660 | PredictedAffinity Capture-MS | FSW = 0.2892
| Unknown | RRNA PROCESSING PROTEIN-RELATED |
AT1G61580 | PredictedAffinity Capture-MS | FSW = 0.6135
| Unknown | RPL3B (R-PROTEIN L3 B) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT5G56710 | PredictedAffinity Capture-MS | FSW = 0.5518
| Unknown | 60S RIBOSOMAL PROTEIN L31 (RPL31C) |
AT3G12280 | PredictedPhenotypic Enhancement | FSW = 0.0041
| Unknown | RBR1 (RETINOBLASTOMA-RELATED 1) TRANSCRIPTION FACTOR BINDING |
AT4G38630 | Predictedtwo hybrid | FSW = 0.0398
| Unknown | RPN10 (REGULATORY PARTICLE NON-ATPASE 10) PEPTIDE RECEPTOR |
AT5G26640 | Predictedtwo hybrid | FSW = 0.0090
| Unknown | UNKNOWN PROTEIN |
AT1G01760 | Predictedtwo hybrid | FSW = 0.0305
| Unknown | RNA BINDING / ADENOSINE DEAMINASE |
AT2G05830 | Predictedtwo hybridtwo hybrid | FSW = 0.0339
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 2B FAMILY PROTEIN / EIF-2B FAMILY PROTEIN |
AT4G08320 | Predictedtwo hybridtwo hybrid | FSW = 0.0103
| Unknown | TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN |
AT5G11010 | Predictedtwo hybridtwo hybrid | FSW = 0.0643
| Unknown | PRE-MRNA CLEAVAGE COMPLEX-RELATED |
AT1G34770 | PredictedAffinity Capture-MS | FSW = 0.0068
| Unknown | MAGE-8 ANTIGEN-RELATED |
AT2G16950 | Predictedin vitro | FSW = 0.0369
| Unknown | TRN1 (TRANSPORTIN 1) PROTEIN TRANSPORTER |
AT2G17870 | PredictedAffinity Capture-MS | FSW = 0.0476
| Unknown | COLD-SHOCK DNA-BINDING FAMILY PROTEIN |
AT3G59020 | Predictedin vitro | FSW = 0.0095
| Unknown | BINDING / PROTEIN TRANSPORTER |
AT4G34910 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2155
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE (RH16) |
AT2G18220 | PredictedAffinity Capture-MS | FSW = 0.2508
| Unknown | INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S UNCHARACTERISED PROTEIN FAMILY UPF0120 (INTERPROIPR005343) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS RBL (REBELOTE) (TAIRAT3G555101) HAS 4846 BLAST HITS TO 3236 PROTEINS IN 249 SPECIES ARCHAE - 2 BACTERIA - 127 METAZOA - 2049 FUNGI - 594 PLANTS - 200 VIRUSES - 69 OTHER EUKARYOTES - 1805 (SOURCE NCBI BLINK) |
AT2G21440 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2410
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT1G03530 | PredictedAffinity Capture-MS | FSW = 0.1759
| Unknown | NAF1 (NUCLEAR ASSEMBLY FACTOR 1) |
AT1G13160 | PredictedAffinity Capture-MS | FSW = 0.1990
| Unknown | SDA1 FAMILY PROTEIN |
AT1G18830 | PredictedAffinity Capture-MS | FSW = 0.0504
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT1G22240 | PredictedAffinity Capture-MS | FSW = 0.1827
| Unknown | APUM8 (ARABIDOPSIS PUMILIO 8) RNA BINDING / BINDING |
AT1G52980 | PredictedAffinity Capture-MS | FSW = 0.1963
| Unknown | GTP-BINDING FAMILY PROTEIN |
AT1G55150 | PredictedAffinity Capture-MS | FSW = 0.0852
| Unknown | DEAD BOX RNA HELICASE PUTATIVE (RH20) |
AT1G57660 | PredictedAffinity Capture-MS | FSW = 0.3375
| Unknown | 60S RIBOSOMAL PROTEIN L21 (RPL21E) |
AT1G79150 | PredictedAffinity Capture-MS | FSW = 0.2350
| Unknown | BINDING |
AT2G16740 | PredictedAffinity Capture-Western | FSW = 0.0177
| Unknown | UBC29 (UBIQUITIN-CONJUGATING ENZYME 29) UBIQUITIN-PROTEIN LIGASE |
AT2G36930 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1310
| Unknown | ZINC FINGER (C2H2 TYPE) FAMILY PROTEIN |
AT3G11450 | PredictedAffinity Capture-MS | FSW = 0.0817
| Unknown | DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN / CELL DIVISION PROTEIN-RELATED |
AT3G15460 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3239
| Unknown | BRIX DOMAIN-CONTAINING PROTEIN |
AT3G16840 | PredictedAffinity Capture-MS | FSW = 0.1910
| Unknown | ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING |
AT3G18740 | PredictedAffinity Capture-MS | FSW = 0.5321
| Unknown | 60S RIBOSOMAL PROTEIN L30 (RPL30C) |
AT3G23390 | PredictedAffinity Capture-MS | FSW = 0.4494
| Unknown | 60S RIBOSOMAL PROTEIN L36A/L44 (RPL36AA) |
AT3G24830 | PredictedAffinity Capture-MS | FSW = 0.4287
| Unknown | 60S RIBOSOMAL PROTEIN L13A (RPL13AB) |
AT4G01560 | PredictedAffinity Capture-MS | FSW = 0.2319
| Unknown | MEE49 (MATERNAL EFFECT EMBRYO ARREST 49) |
AT4G11820 | PredictedAffinity Capture-MS | FSW = 0.0889
| Unknown | MVA1 ACETYL-COA C-ACETYLTRANSFERASE/ HYDROXYMETHYLGLUTARYL-COA SYNTHASE |
AT4G16630 | PredictedAffinity Capture-MS | FSW = 0.2738
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE (RH28) |
AT4G26230 | PredictedAffinity Capture-MS | FSW = 0.0724
| Unknown | 60S RIBOSOMAL PROTEIN L31 (RPL31B) |
AT4G27640 | PredictedAffinity Capture-Westerninteraction prediction | FSW = 0.0386
| Unknown | IMPORTIN BETA-2 SUBUNIT FAMILY PROTEIN |
AT5G05450 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3044
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE (RH18) |
AT5G08420 | PredictedAffinity Capture-MS | FSW = 0.1218
| Unknown | RNA BINDING |
AT5G14520 | PredictedPhenotypic EnhancementAffinity Capture-MS | FSW = 0.2822
| Unknown | PESCADILLO-RELATED |
AT5G19820 | PredictedAffinity Capture-Westerninteraction prediction | FSW = 0.0176
| Unknown | EMB2734 (EMBRYO DEFECTIVE 2734) BINDING / LYASE |
AT5G20600 | PredictedAffinity Capture-MS | FSW = 0.2674
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RRNA PROCESSING LOCATED IN PRERIBOSOME SMALL SUBUNIT PRECURSOR EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NUCLEOLAR NOP52 (INTERPROIPR010301) HAS 444 BLAST HITS TO 431 PROTEINS IN 151 SPECIES ARCHAE - 0 BACTERIA - 10 METAZOA - 196 FUNGI - 114 PLANTS - 27 VIRUSES - 0 OTHER EUKARYOTES - 97 (SOURCE NCBI BLINK) |
AT5G46840 | PredictedAffinity Capture-MS | FSW = 0.2232
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT5G65900 | PredictedAffinity Capture-MS | FSW = 0.3529
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
AT4G15770 | PredictedAffinity Capture-MS | FSW = 0.2415
| Unknown | RNA BINDING / PROTEIN BINDING |
AT3G05870 | Predictedtwo hybrid | FSW = 0.0122
| Unknown | APC11 PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE/ ZINC ION BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454