Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G07770 - ( RPS15A (ribosomal protein s15a) structural constituent of ribosome )

112 Proteins interacs with AT1G07770
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT2G01830

Experimental

FSW = 0.0142

Unknown

WOL (WOODEN LEG) CYTOKININ RECEPTOR/ OSMOSENSOR/ PHOSPHOPROTEIN PHOSPHATASE/ PROTEIN HISTIDINE KINASE
AT3G04920

Predicted

Affinity Capture-MS

FSW = 0.4065

Class C:

vacuole

plasma membrane

40S RIBOSOMAL PROTEIN S24 (RPS24A)
AT3G49910

Predicted

Affinity Capture-MS

FSW = 0.2898

Class C:

vacuole

plasma membrane

60S RIBOSOMAL PROTEIN L26 (RPL26A)
AT2G18020

Predicted

Affinity Capture-MS

FSW = 0.4515

Class C:

vacuole

plasma membrane

EMB2296 (EMBRYO DEFECTIVE 2296) STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G09630

Predicted

Affinity Capture-MS

FSW = 0.2697

Class C:

vacuole

plasma membrane

60S RIBOSOMAL PROTEIN L4/L1 (RPL4A)
AT2G42740

Predicted

Affinity Capture-MS

FSW = 0.4756

Class C:

vacuole

plasma membrane

RPL16A STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G09200

Predicted

Affinity Capture-MS

FSW = 0.2898

Class C:

vacuole

plasma membrane

60S ACIDIC RIBOSOMAL PROTEIN P0 (RPP0B)
AT2G36160

Predicted

Affinity Capture-MS

FSW = 0.1041

Class C:

vacuole

plasma membrane

40S RIBOSOMAL PROTEIN S14 (RPS14A)
AT2G17360

Predicted

Affinity Capture-MS

FSW = 0.3007

Class C:

vacuole

plasma membrane

40S RIBOSOMAL PROTEIN S4 (RPS4A)
AT3G49010

Predicted

Affinity Capture-MS

FSW = 0.3287

Class C:

vacuole

plasma membrane

ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1) STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G67430

Predicted

Affinity Capture-MS

FSW = 0.4564

Class C:

vacuole

plasma membrane

60S RIBOSOMAL PROTEIN L17 (RPL17B)
AT2G37270

Predicted

Affinity Capture-MS

FSW = 0.4109

Class C:

vacuole

plasma membrane

ATRPS5B (RIBOSOMAL PROTEIN 5B) STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G22780

Predicted

Affinity Capture-MS

FSW = 0.0349

Class C:

vacuole

plasma membrane

PFL (POINTED FIRST LEAVES) RNA BINDING / NUCLEIC ACID BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME
AT2G34480

Predicted

Affinity Capture-MS

FSW = 0.3308

Class C:

vacuole

plasma membrane

60S RIBOSOMAL PROTEIN L18A (RPL18AB)
AT5G15200

Predicted

Affinity Capture-MS

FSW = 0.4851

Class C:

vacuole

40S RIBOSOMAL PROTEIN S9 (RPS9B)
AT2G47610

Predicted

Affinity Capture-MS

FSW = 0.3857

Class C:

vacuole

60S RIBOSOMAL PROTEIN L7A (RPL7AA)
AT1G33140

Predicted

Affinity Capture-MS

FSW = 0.3202

Class C:

vacuole

PGY2 (PIGGYBACK2) STRUCTURAL CONSTITUENT OF RIBOSOME
AT4G39660

Predicted

two hybrid

FSW = 0.0192

Class C:

vacuole

AGT2 (ALANINEGLYOXYLATE AMINOTRANSFERASE 2) ALANINE-GLYOXYLATE TRANSAMINASE/ CATALYTIC/ PYRIDOXAL PHOSPHATE BINDING / TRANSAMINASE
AT1G66580

Predicted

Affinity Capture-MS

FSW = 0.4293

Class C:

vacuole

60S RIBOSOMAL PROTEIN L10 (RPL10C)
AT5G25780

Predicted

Affinity Capture-MS

FSW = 0.0938

Class C:

vacuole

EIF3B-2 (EUKARYOTIC TRANSLATION INITIATION FACTOR 3B-2) NUCLEIC ACID BINDING / PROTEIN BINDING / TRANSLATION INITIATION FACTOR
AT5G20290

Predicted

Affinity Capture-MS

FSW = 0.5123

Class C:

plasma membrane

40S RIBOSOMAL PROTEIN S8 (RPS8A)
AT2G09990

Predicted

Affinity Capture-MS

FSW = 0.4705

Class C:

plasma membrane

40S RIBOSOMAL PROTEIN S16 (RPS16A)
AT1G48830

Predicted

Affinity Capture-MS

FSW = 0.3599

Class C:

plasma membrane

40S RIBOSOMAL PROTEIN S7 (RPS7A)
AT3G58510

Predicted

Affinity Capture-MS

FSW = 0.2317

Class C:

plasma membrane

DEAD BOX RNA HELICASE PUTATIVE (RH11)
AT3G11510

Predicted

Affinity Capture-MS

FSW = 0.4793

Class C:

plasma membrane

40S RIBOSOMAL PROTEIN S14 (RPS14B)
AT5G39740

Predicted

Affinity Capture-MS

FSW = 0.2313

Class C:

plasma membrane

60S RIBOSOMAL PROTEIN L5 (RPL5B)
AT2G37190

Predicted

Affinity Capture-MS

FSW = 0.4603

Class C:

plasma membrane

60S RIBOSOMAL PROTEIN L12 (RPL12A)
AT4G00100

Predicted

Affinity Capture-MS

FSW = 0.5293

Class C:

plasma membrane

ATRPS13A (ARABIDOPSIS THALIANA RIBOSOMAL PROTEIN S13A) STRUCTURAL CONSTITUENT OF RIBOSOME
AT2G27710

Predicted

Affinity Capture-MS

FSW = 0.3624

Class C:

plasma membrane

60S ACIDIC RIBOSOMAL PROTEIN P2 (RPP2B)
AT2G04390

Predicted

Affinity Capture-MS

FSW = 0.1908

Class C:

plasma membrane

40S RIBOSOMAL PROTEIN S17 (RPS17A)
AT4G34670

Predicted

Affinity Capture-MS

FSW = 0.4043

Class C:

plasma membrane

40S RIBOSOMAL PROTEIN S3A (RPS3AB)
AT5G52640

Predicted

two hybrid

FSW = 0.0228

Class C:

plasma membrane

ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING
AT5G62300

Predicted

Affinity Capture-MS

FSW = 0.0664

Class C:

plasma membrane

40S RIBOSOMAL PROTEIN S20 (RPS20C)
AT2G37600

Predicted

Affinity Capture-MS

FSW = 0.4146

Class C:

plasma membrane

60S RIBOSOMAL PROTEIN L36 (RPL36A)
AT1G70600

Predicted

Affinity Capture-MS

FSW = 0.4308

Class C:

plasma membrane

STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G76810Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2494

Class C:

plasma membrane

EUKARYOTIC TRANSLATION INITIATION FACTOR 2 FAMILY PROTEIN / EIF-2 FAMILY PROTEIN
AT4G15000

Predicted

Affinity Capture-MS

FSW = 0.3053

Class C:

plasma membrane

60S RIBOSOMAL PROTEIN L27 (RPL27C)
AT3G53870

Predicted

Affinity Capture-MS

FSW = 0.3639

Class C:

plasma membrane

40S RIBOSOMAL PROTEIN S3 (RPS3B)
AT3G11400

Predicted

Affinity Capture-MS

FSW = 0.1470

Class C:

plasma membrane

EUKARYOTIC TRANSLATION INITIATION FACTOR 3G / EIF3G
AT5G22440

Predicted

Affinity Capture-MS

FSW = 0.4184

Unknown

60S RIBOSOMAL PROTEIN L10A (RPL10AC)
AT3G13580

Predicted

Affinity Capture-MS

FSW = 0.3858

Unknown

60S RIBOSOMAL PROTEIN L7 (RPL7D)
AT3G06530

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1768

Unknown

BINDING
AT1G06380

Predicted

Affinity Capture-MS

FSW = 0.0696

Unknown

RIBOSOMAL PROTEIN-RELATED
AT2G47250

Predicted

Affinity Capture-MS

FSW = 0.0625

Unknown

RNA HELICASE PUTATIVE
AT5G57015

Predicted

Affinity Capture-MS

FSW = 0.0566

Unknown

CKL12 (CASEIN KINASE I-LIKE 12) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT1G03930

Predicted

Affinity Capture-MS

FSW = 0.0407

Unknown

ADK1 (DUAL SPECIFICITY KINASE 1) KINASE/ PROTEIN SERINE/THREONINE/TYROSINE KINASE
AT3G57150

Predicted

Affinity Capture-MS

FSW = 0.2374

Unknown

NAP57 (ARABIDOPSIS THALIANA HOMOLOGUE OF NAP57) PSEUDOURIDINE SYNTHASE
AT4G17390

Predicted

Affinity Capture-MS

FSW = 0.4337

Unknown

60S RIBOSOMAL PROTEIN L15 (RPL15B)
AT5G58420

Predicted

Affinity Capture-MS

FSW = 0.4975

Unknown

40S RIBOSOMAL PROTEIN S4 (RPS4D)
AT4G25630

Predicted

Affinity Capture-MS

FSW = 0.2679

Unknown

FIB2 (FIBRILLARIN 2) SNORNA BINDING
AT1G74060

Predicted

Affinity Capture-MS

FSW = 0.3395

Unknown

60S RIBOSOMAL PROTEIN L6 (RPL6B)
AT1G72440

Predicted

Affinity Capture-MS

FSW = 0.2260

Unknown

EDA25 (EMBRYO SAC DEVELOPMENT ARREST 25)
AT1G63810

Predicted

Affinity Capture-MS

FSW = 0.1885

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NRAP PROTEIN (INTERPROIPR005554) HAS 268 BLAST HITS TO 263 PROTEINS IN 124 SPECIES ARCHAE - 3 BACTERIA - 0 METAZOA - 116 FUNGI - 89 PLANTS - 17 VIRUSES - 0 OTHER EUKARYOTES - 43 (SOURCE NCBI BLINK)
AT3G58660

Predicted

Affinity Capture-MS

FSW = 0.1838

Unknown

60S RIBOSOMAL PROTEIN-RELATED
AT3G05060

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1851

Unknown

SAR DNA-BINDING PROTEIN PUTATIVE
AT3G62310

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1602

Unknown

RNA HELICASE PUTATIVE
AT3G12860

Predicted

Affinity Capture-MS

FSW = 0.1794

Unknown

NUCLEOLAR PROTEIN NOP56 PUTATIVE
AT4G18040

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0640

Unknown

EIF4E (EUKARYOTIC TRANSLATION INITATION FACTOR 4E) RNA BINDING / RNA CAP BINDING / PROTEIN BINDING / TRANSLATION INITIATION FACTOR
AT3G16980

Predicted

two hybrid

interaction prediction

FSW = 0.0044

Unknown

NRPB9A DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ NUCLEIC ACID BINDING / TRANSCRIPTION REGULATOR/ ZINC ION BINDING
AT3G18130

Predicted

Affinity Capture-MS

FSW = 0.1031

Unknown

RACK1C_AT (RECEPTOR FOR ACTIVATED C KINASE 1 C) NUCLEOTIDE BINDING
AT5G66540

Predicted

Affinity Capture-MS

FSW = 0.1687

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RRNA PROCESSING LOCATED IN CYTOSOL NUCLEOLUS NUCLEUS EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 12 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN COMPLEX SUBUNIT MPP10P (INTERPROIPR012173) MPP10 PROTEIN (INTERPROIPR007151) HAS 76240 BLAST HITS TO 38667 PROTEINS IN 1479 SPECIES ARCHAE - 252 BACTERIA - 6537 METAZOA - 31185 FUNGI - 9935 PLANTS - 3937 VIRUSES - 750 OTHER EUKARYOTES - 23644 (SOURCE NCBI BLINK)
AT4G23900

Predicted

Affinity Capture-MS

FSW = 0.0510

Unknown

NUCLEOSIDE DIPHOSPHATE KINASE 4 (NDK4)
AT1G71270

Predicted

two hybrid

two hybrid

FSW = 0.0085

Unknown

POK (POKY POLLEN TUBE)
AT5G52650

Predicted

Affinity Capture-MS

FSW = 0.1182

Unknown

40S RIBOSOMAL PROTEIN S10 (RPS10C)
AT4G30800

Predicted

Affinity Capture-MS

FSW = 0.3270

Unknown

40S RIBOSOMAL PROTEIN S11 (RPS11B)
AT5G56710

Predicted

Affinity Capture-MS

FSW = 0.3163

Unknown

60S RIBOSOMAL PROTEIN L31 (RPL31C)
AT1G61580

Predicted

Affinity Capture-MS

FSW = 0.4002

Unknown

RPL3B (R-PROTEIN L3 B) STRUCTURAL CONSTITUENT OF RIBOSOME
AT4G29430

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.0419

Unknown

RPS15AE (RIBOSOMAL PROTEIN S15A E) STRUCTURAL CONSTITUENT OF RIBOSOME
AT5G59240

Predicted

Affinity Capture-MS

FSW = 0.4977

Unknown

40S RIBOSOMAL PROTEIN S8 (RPS8B)
AT1G10490

Predicted

Affinity Capture-MS

FSW = 0.3097

Unknown

UNKNOWN PROTEIN
AT2G22240

Predicted

two hybrid

FSW = 0.0189

Unknown

MIPS2 (MYO-INOSITOL-1-PHOSTPATE SYNTHASE 2) BINDING / CATALYTIC/ INOSITOL-3-PHOSPHATE SYNTHASE
AT4G39800

Predicted

interaction prediction

FSW = 0.0189

Unknown

MIPS1 (MYO-INOSITOL-1-PHOSTPATE SYNTHASE 1) INOSITOL-3-PHOSPHATE SYNTHASE
AT3G46220

Predicted

two hybrid

two hybrid

FSW = 0.0292

Unknown

UNKNOWN PROTEIN
AT2G26000

Predicted

two hybrid

two hybrid

FSW = 0.0274

Unknown

ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEIN
AT1G03530

Predicted

Affinity Capture-MS

FSW = 0.1677

Unknown

NAF1 (NUCLEAR ASSEMBLY FACTOR 1)
AT1G04170

Predicted

Affinity Capture-MS

FSW = 0.0908

Unknown

EIF2 GAMMA TRANSLATION FACTOR NUCLEIC ACID BINDING / TRANSLATION INITIATION FACTOR
AT1G08780

Predicted

Synthetic Lethality

interaction prediction

FSW = 0.0150

Unknown

AIP3 (ABI3-INTERACTING PROTEIN 3) UNFOLDED PROTEIN BINDING
AT1G15440

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1660

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT1G16280

Predicted

Affinity Capture-MS

FSW = 0.0812

Unknown

DEAD/DEAH BOX HELICASE PUTATIVE
AT1G29990

Predicted

Synthetic Lethality

interaction prediction

FSW = 0.0100

Unknown

PDF6 (PREFOLDIN 6) UNFOLDED PROTEIN BINDING
AT1G31660

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2761

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S BYSTIN (INTERPROIPR007955) HAS 370 BLAST HITS TO 362 PROTEINS IN 156 SPECIES ARCHAE - 0 BACTERIA - 7 METAZOA - 139 FUNGI - 93 PLANTS - 32 VIRUSES - 0 OTHER EUKARYOTES - 99 (SOURCE NCBI BLINK)
AT1G42440

Predicted

Affinity Capture-MS

FSW = 0.1815

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RIBOSOME BIOGENESIS LOCATED IN NUCLEUS EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S AARP2CN (INTERPROIPR012948) PROTEIN OF UNKNOWN FUNCTION DUF663 (INTERPROIPR007034) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G067201) HAS 2447 BLAST HITS TO 1812 PROTEINS IN 205 SPECIES ARCHAE - 0 BACTERIA - 115 METAZOA - 903 FUNGI - 423 PLANTS - 100 VIRUSES - 53 OTHER EUKARYOTES - 853 (SOURCE NCBI BLINK)
AT2G19540

Predicted

Affinity Capture-MS

FSW = 0.0176

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT2G39840

Predicted

Affinity Capture-MS

FSW = 0.0427

Unknown

TOPP4 PROTEIN SERINE/THREONINE PHOSPHATASE
AT3G16840

Predicted

Affinity Capture-MS

FSW = 0.1175

Unknown

ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING
AT3G18740

Predicted

Affinity Capture-MS

FSW = 0.4544

Unknown

60S RIBOSOMAL PROTEIN L30 (RPL30C)
AT3G22480

Predicted

Synthetic Lethality

interaction prediction

FSW = 0.0171

Unknown

PREFOLDIN-RELATED KE2 FAMILY PROTEIN
AT3G23390

Predicted

Affinity Capture-MS

FSW = 0.3312

Unknown

60S RIBOSOMAL PROTEIN L36A/L44 (RPL36AA)
AT3G24830

Predicted

Affinity Capture-MS

FSW = 0.4010

Unknown

60S RIBOSOMAL PROTEIN L13A (RPL13AB)
AT3G51270

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1799

Unknown

ATP BINDING / CATALYTIC/ PROTEIN SERINE/THREONINE KINASE
AT3G56150

Predicted

Affinity Capture-MS

FSW = 0.1153

Unknown

EIF3C (EUKARYOTIC TRANSLATION INITIATION FACTOR 3C) TRANSLATION INITIATION FACTOR
AT3G60240

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0729

Unknown

EIF4G (EUKARYOTIC TRANSLATION INITIATION FACTOR 4G) TRANSLATION INITIATION FACTOR
AT4G11820

Predicted

Affinity Capture-MS

FSW = 0.0495

Unknown

MVA1 ACETYL-COA C-ACETYLTRANSFERASE/ HYDROXYMETHYLGLUTARYL-COA SYNTHASE
AT4G18905

Predicted

Affinity Capture-MS

FSW = 0.0127

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT4G19210

Predicted

Affinity Capture-MS

FSW = 0.2351

Unknown

ATRLI2 TRANSPORTER
AT4G30991Predicted

Affinity Capture-MS

FSW = 0.1499

Unknown

ATRLI2 TRANSPORTER
AT5G08420

Predicted

Affinity Capture-MS

FSW = 0.2349

Unknown

RNA BINDING
AT5G23290

Predicted

Synthetic Lethality

interaction prediction

FSW = 0.0116

Unknown

PDF5 (PREFOLDIN 5) UNFOLDED PROTEIN BINDING
AT5G41190

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0684

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NIN ONE BINDING (NOB1) ZN-RIBBON LIKE (INTERPROIPR014881) D-SITE 20S PRE-RRNA NUCLEASE (INTERPROIPR017117) HAS 855 BLAST HITS TO 653 PROTEINS IN 196 SPECIES ARCHAE - 53 BACTERIA - 16 METAZOA - 335 FUNGI - 168 PLANTS - 29 VIRUSES - 10 OTHER EUKARYOTES - 244 (SOURCE NCBI BLINK)
AT5G49510

Predicted

Synthetic Lethality

interaction prediction

FSW = 0.0115

Unknown

PDF3 (PREFOLDIN 3) UNFOLDED PROTEIN BINDING
AT5G66100

Predicted

Affinity Capture-MS

FSW = 0.1137

Unknown

LA DOMAIN-CONTAINING PROTEIN
AT2G40430

Predicted

Affinity Capture-MS

FSW = 0.0797

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TUMOR SUPPRESSOR PROTEIN GLTSCR2 (INTERPROIPR011211) P60-LIKE (INTERPROIPR011687) HAS 601 BLAST HITS TO 544 PROTEINS IN 148 SPECIES ARCHAE - 0 BACTERIA - 22 METAZOA - 201 FUNGI - 103 PLANTS - 32 VIRUSES - 0 OTHER EUKARYOTES - 243 (SOURCE NCBI BLINK)
AT3G55280

Predicted

Affinity Capture-MS

FSW = 0.3512

Unknown

RPL23AB (RIBOSOMAL PROTEIN L23AB) RNA BINDING / NUCLEOTIDE BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME
AT2G29400

Predicted

Affinity Capture-MS

FSW = 0.0161

Unknown

TOPP1 (TYPE ONE PROTEIN PHOSPHATASE 1) PROTEIN SERINE/THREONINE PHOSPHATASE
AT3G22860

Predicted

Affinity Capture-MS

FSW = 0.0501

Unknown

TIF3C2 TRANSLATION INITIATION FACTOR
AT1G21160

Predicted

Affinity Capture-MS

FSW = 0.1192

Unknown

GTP BINDING / GTPASE/ TRANSLATION INITIATION FACTOR
AT3G54470

Predicted

two hybrid

FSW = 0.0249

Unknown

URIDINE 5-MONOPHOSPHATE SYNTHASE / UMP SYNTHASE (PYRE-F) (UMPS)
AT2G25700

Predicted

two hybrid

FSW = 0.0086

Unknown

ASK3 (ARABIDOPSIS SKP1-LIKE 3) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT5G59850Predicted

Gene fusion method

Phylogenetic profile method

Co-expression

FSW = 0.0731

Unknown

40S RIBOSOMAL PROTEIN S15A (RPS15AF)
AT3G46040

Predicted

Gene fusion method

Phylogenetic profile method

Co-expression

FSW = 0.1008

Unknown

RPS15AD (RIBOSOMAL PROTEIN S15A D) STRUCTURAL CONSTITUENT OF RIBOSOME
AT2G19720

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.0637

Unknown

RPS15AB (RIBOSOMAL PROTEIN S15A B) STRUCTURAL CONSTITUENT OF RIBOSOME
AT2G39590

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.0275

Unknown

40S RIBOSOMAL PROTEIN S15A (RPS15AC)

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454