Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G36160 - ( 40S ribosomal protein S14 (RPS14A) )
76 Proteins interacs with AT2G36160| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT3G49910
   | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4082
| Class C:vacuoleplastidplasma membrane | 60S RIBOSOMAL PROTEIN L26 (RPL26A) |
| AT1G67430
| PredictedAffinity Capture-MS | FSW = 0.1099
| Class C:vacuoleplasma membrane | 60S RIBOSOMAL PROTEIN L17 (RPL17B) |
| AT3G49010
| PredictedAffinity Capture-MS | FSW = 0.1104
| Class C:vacuoleplasma membrane | ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT3G12580
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2920
| Class C:vacuoleplasma membrane | HSP70 (HEAT SHOCK PROTEIN 70) ATP BINDING |
| AT2G37270
| PredictedAffinity Capture-MS | FSW = 0.1132
| Class C:vacuoleplasma membrane | ATRPS5B (RIBOSOMAL PROTEIN 5B) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT1G07770
| PredictedAffinity Capture-MS | FSW = 0.1041
| Class C:vacuoleplasma membrane | RPS15A (RIBOSOMAL PROTEIN S15A) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT3G13080
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2466
| Class C:vacuole | ATMRP3 ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES / CHLOROPHYLL CATABOLITE TRANSPORTER/ GLUTATHIONE S-CONJUGATE-EXPORTING ATPASE |
| AT4G18730 | PredictedAffinity Capture-MS | FSW = 0.0316
| Class C:vacuole | RPL16B STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT1G18540
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.5490
| Class C:plastidplasma membrane | 60S RIBOSOMAL PROTEIN L6 (RPL6A) |
| AT5G09650
| PredictedAffinity Capture-MS | FSW = 0.0115
| Class C:plastidplasma membrane | ATPPA6 (ARABIDOPSIS THALIANA PYROPHOSPHORYLASE 6) INORGANIC DIPHOSPHATASE/ PYROPHOSPHATASE |
| AT3G20390
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4248
| Class C:plastid | ENDORIBONUCLEASE L-PSP FAMILY PROTEIN |
| AT2G22780
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1703
| Class C:plastid | PMDH1 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 1) L-MALATE DEHYDROGENASE/ BINDING / CATALYTIC/ MALATE DEHYDROGENASE/ OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON THE CH-OH GROUP OF DONORS NAD OR NADP AS ACCEPTOR |
| AT2G31170
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3823
| Class C:plastid | SYCO ARATH ATP BINDING / AMINOACYL-TRNA LIGASE/ CYSTEINE-TRNA LIGASE/ NUCLEOTIDE BINDING |
| AT1G21640
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4248
| Class C:plastid | NADK2 NAD+ KINASE/ CALMODULIN BINDING |
| AT5G13050
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0879
| Class C:plastid | 5-FCL (5-FORMYLTETRAHYDROFOLATE CYCLOLIGASE) 5-FORMYLTETRAHYDROFOLATE CYCLO-LIGASE |
| AT5G20010
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4385
| Class C:plasma membrane | RAN-1 GTP BINDING / GTPASE/ PROTEIN BINDING |
| AT3G23600
| PredictedAffinity Capture-MS | FSW = 0.0381
| Class C:plasma membrane | DIENELACTONE HYDROLASE FAMILY PROTEIN |
| AT3G11510
| PredictedSynthetic LethalityAffinity Capture-MSGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.2380
| Class C:plasma membrane | 40S RIBOSOMAL PROTEIN S14 (RPS14B) |
| AT4G00100
| PredictedAffinity Capture-MS | FSW = 0.1016
| Class C:plasma membrane | ATRPS13A (ARABIDOPSIS THALIANA RIBOSOMAL PROTEIN S13A) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT3G61430
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4230
| Class C:plasma membrane | PIP1A (PLASMA MEMBRANE INTRINSIC PROTEIN 1A) WATER CHANNEL |
| AT3G13560
| PredictedAffinity Capture-MS | FSW = 0.0177
| Class C:plasma membrane | GLYCOSYL HYDROLASE FAMILY 17 PROTEIN |
| AT1G63290
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.5538
| Class C:plasma membrane | RIBULOSE-PHOSPHATE 3-EPIMERASE CYTOSOLIC PUTATIVE / PENTOSE-5-PHOSPHATE 3-EPIMERASE PUTATIVE |
| AT1G11250
| PredictedAffinity Capture-MS | FSW = 0.2980
| Class C:plasma membrane | SYP125 (SYNTAXIN OF PLANTS 125) SNAP RECEPTOR |
| AT1G55690
| PredictedAffinity Capture-MS | FSW = 0.1782
| Class C:plasma membrane | SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLYCERIDE TRANSFER FAMILY PROTEIN |
| AT4G24400
| PredictedAffinity Capture-MS | FSW = 0.2143
| Class C:plasma membrane | CIPK8 (CBL-INTERACTING PROTEIN KINASE 8) KINASE/ PROTEIN KINASE |
| AT1G20760
| PredictedAffinity Capture-MS | FSW = 0.4489
| Class C:plasma membrane | CALCIUM-BINDING EF HAND FAMILY PROTEIN |
| AT3G53870
| PredictedAffinity Capture-MS | FSW = 0.1078
| Class C:plasma membrane | 40S RIBOSOMAL PROTEIN S3 (RPS3B) |
| AT4G35310
| PredictedAffinity Capture-MS | FSW = 0.4889
| Class C:plasma membrane | CPK5 (CALMODULIN-DOMAIN PROTEIN KINASE 5) ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
| AT1G74060
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3617
| Unknown | 60S RIBOSOMAL PROTEIN L6 (RPL6B) |
| AT4G26600
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2636
| Unknown | NUCLEOLAR PROTEIN PUTATIVE |
| AT5G58420
| PredictedAffinity Capture-MS | FSW = 0.1376
| Unknown | 40S RIBOSOMAL PROTEIN S4 (RPS4D) |
| AT1G72440
| PredictedAffinity Capture-MSCo-expression | FSW = 0.0446
| Unknown | EDA25 (EMBRYO SAC DEVELOPMENT ARREST 25) |
| AT1G04510
| PredictedCo-purificationCo-expression | FSW = 0.0046
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
| AT2G23460
| PredictedAffinity Capture-MS | FSW = 0.2733
| Unknown | XLG1 (EXTRA-LARGE G-PROTEIN 1) GUANYL NUCLEOTIDE BINDING / SIGNAL TRANSDUCER |
| AT5G66540
| PredictedAffinity Capture-Western | FSW = 0.0743
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RRNA PROCESSING LOCATED IN CYTOSOL NUCLEOLUS NUCLEUS EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 12 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN COMPLEX SUBUNIT MPP10P (INTERPROIPR012173) MPP10 PROTEIN (INTERPROIPR007151) HAS 76240 BLAST HITS TO 38667 PROTEINS IN 1479 SPECIES ARCHAE - 252 BACTERIA - 6537 METAZOA - 31185 FUNGI - 9935 PLANTS - 3937 VIRUSES - 750 OTHER EUKARYOTES - 23644 (SOURCE NCBI BLINK) |
| AT2G18450
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3964
| Unknown | SDH1-2 SUCCINATE DEHYDROGENASE |
| AT3G52580
| PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.1900
| Unknown | 40S RIBOSOMAL PROTEIN S14 (RPS14C) |
| AT1G61580
| PredictedAffinity Capture-MS | FSW = 0.0657
| Unknown | RPL3B (R-PROTEIN L3 B) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT3G12530
| PredictedAffinity Capture-MS | FSW = 0.2540
| Unknown | PSF2 |
| AT2G29540
| Predictedtwo hybrid | FSW = 0.0167
| Unknown | ATRPC14 (RNA POLYMERASE 14 KDA SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION |
| AT4G17190
| PredictedAffinity Capture-MS | FSW = 0.0185
| Unknown | FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) DIMETHYLALLYLTRANSTRANSFERASE/ GERANYLTRANSTRANSFERASE |
| AT1G79975 | Predictedtwo hybridtwo hybrid | FSW = 0.0608
| Unknown | FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) DIMETHYLALLYLTRANSTRANSFERASE/ GERANYLTRANSTRANSFERASE |
| AT4G15030 | Predictedtwo hybridtwo hybrid | FSW = 0.0443
| Unknown | UNKNOWN PROTEIN |
| AT4G36630
| Predictedtwo hybridtwo hybrid | FSW = 0.0354
| Unknown | EMB2754 (EMBRYO DEFECTIVE 2754) BINDING / SMALL GTPASE REGULATOR |
| AT5G60340 | Predictedtwo hybridAffinity Capture-MStwo hybridtwo hybridReconstituted Complex | FSW = 0.0486
| Unknown | MAOC-LIKE DEHYDRATASE DOMAIN-CONTAINING PROTEIN |
| AT1G01960
| PredictedAffinity Capture-MS | FSW = 0.0167
| Unknown | EDA10 (EMBRYO SAC DEVELOPMENT ARREST 10) ARF GUANYL-NUCLEOTIDE EXCHANGE FACTOR/ BINDING / GUANYL-NUCLEOTIDE EXCHANGE FACTOR |
| AT1G15440
| PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.0593
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
| AT1G54290
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3356
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE |
| AT1G55730
| PredictedAffinity Capture-MS | FSW = 0.1718
| Unknown | ATCAX5 CALCIUMCATION ANTIPORTER/ CATIONCATION ANTIPORTER |
| AT2G03040
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3584
| Unknown | TRANSMEMBRANE PROTEIN-RELATED |
| AT2G16090
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.5461
| Unknown | ZINC FINGER PROTEIN-RELATED |
| AT2G16740
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2498
| Unknown | UBC29 (UBIQUITIN-CONJUGATING ENZYME 29) UBIQUITIN-PROTEIN LIGASE |
| AT1G03530
| PredictedAffinity Capture-MSCo-expression | FSW = 0.0681
| Unknown | NAF1 (NUCLEAR ASSEMBLY FACTOR 1) |
| AT1G31660
| PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.0828
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S BYSTIN (INTERPROIPR007955) HAS 370 BLAST HITS TO 362 PROTEINS IN 156 SPECIES ARCHAE - 0 BACTERIA - 7 METAZOA - 139 FUNGI - 93 PLANTS - 32 VIRUSES - 0 OTHER EUKARYOTES - 99 (SOURCE NCBI BLINK) |
| AT3G23570
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2579
| Unknown | DIENELACTONE HYDROLASE FAMILY PROTEIN |
| AT3G24080
| PredictedAffinity Capture-MS | FSW = 0.0707
| Unknown | KRR1 FAMILY PROTEIN |
| AT3G52390
| PredictedAffinity Capture-MS | FSW = 0.1618
| Unknown | TATD-RELATED DEOXYRIBONUCLEASE FAMILY PROTEIN |
| AT4G38630
| PredictedAffinity Capture-MS | FSW = 0.0178
| Unknown | RPN10 (REGULATORY PARTICLE NON-ATPASE 10) PEPTIDE RECEPTOR |
| AT5G46150
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3953
| Unknown | LEM3 (LIGAND-EFFECT MODULATOR 3) FAMILY PROTEIN / CDC50 FAMILY PROTEIN |
| AT5G67380
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2542
| Unknown | CKA1 (CASEIN KINASE ALPHA 1) KINASE |
| AT2G37540
| PredictedAffinity Capture-MS | FSW = 0.4045
| Unknown | SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN |
| AT3G47940
| PredictedAffinity Capture-MS | FSW = 0.2202
| Unknown | DNAJ HEAT SHOCK PROTEIN PUTATIVE |
| AT4G11330
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2042
| Unknown | ATMPK5 (MAP KINASE 5) MAP KINASE/ KINASE |
| AT4G26230
| PredictedAffinity Capture-MS | FSW = 0.0642
| Unknown | 60S RIBOSOMAL PROTEIN L31 (RPL31B) |
| AT4G36800
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.5208
| Unknown | RCE1 (RUB1 CONJUGATING ENZYME 1) NEDD8 LIGASE/ SMALL CONJUGATING PROTEIN LIGASE |
| AT4G39330
| PredictedAffinity Capture-MS | FSW = 0.2157
| Unknown | CAD9 (CINNAMYL ALCOHOL DEHYDROGENASE 9) BINDING / CATALYTIC/ OXIDOREDUCTASE/ ZINC ION BINDING |
| AT5G06420
| PredictedAffinity Capture-MS | FSW = 0.4024
| Unknown | ZINC FINGER (CCCH-TYPE/C3HC4-TYPE RING FINGER) FAMILY PROTEIN |
| AT5G16750
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3560
| Unknown | TOZ (TORMOZEMBRYO DEFECTIVE) NUCLEOTIDE BINDING |
| AT5G17000
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2263
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
| AT5G37850
| PredictedAffinity Capture-MS | FSW = 0.4377
| Unknown | SOS4 (SALT OVERLY SENSITIVE 4) KINASE/ PYRIDOXAL KINASE |
| AT5G54200
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3613
| Unknown | WD-40 REPEAT FAMILY PROTEIN |
| AT5G02530
| PredictedAffinity Capture-MSCo-expression | FSW = 0.0068
| Unknown | RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE |
| AT2G39770
| PredictedAffinity Capture-MS | FSW = 0.0238
| Unknown | CYT1 (CYTOKINESIS DEFECTIVE 1) MANNOSE-1-PHOSPHATE GUANYLYLTRANSFERASE/ NUCLEOTIDYLTRANSFERASE |
| AT1G30820
| PredictedAffinity Capture-MS | FSW = 0.0339
| Unknown | CTP SYNTHASE PUTATIVE / UTP--AMMONIA LIGASE PUTATIVE |
| AT5G08420
| Predictedinterologs mapping | FSW = 0.0897
| Unknown | RNA BINDING |
| AT4G15930
| Predictedtwo hybridCo-expression | FSW = 0.0104
| Unknown | MICROTUBULE MOTOR |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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