Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G13080 - ( ATMRP3 ATPase coupled to transmembrane movement of substances / chlorophyll catabolite transporter/ glutathione S-conjugate-exporting ATPase )
51 Proteins interacs with AT3G13080Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G49910 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1653
| Class C:vacuole | 60S RIBOSOMAL PROTEIN L26 (RPL26A) |
AT2G36160 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2466
| Class C:vacuole | 40S RIBOSOMAL PROTEIN S14 (RPS14A) |
AT3G12580 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1110
| Class C:vacuole | HSP70 (HEAT SHOCK PROTEIN 70) ATP BINDING |
AT4G36130 | Predictedinterologs mapping | FSW = 0.0408
| Class C:vacuole | 60S RIBOSOMAL PROTEIN L8 (RPL8C) |
AT2G47800 | PredictedEnriched domain pairPhylogenetic profile method | FSW = 0.4000
| Class C:vacuole | ATMRP4 (ARABIDOPSIS THALIANA MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 4) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES / FOLIC ACID TRANSPORTER |
AT3G21250 | PredictedEnriched domain pairGene neighbors methodPhylogenetic profile method | FSW = 0.3714
| Class C:vacuole | ATMRP6 ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
AT3G13090 | PredictedEnriched domain pairGene neighbors methodPhylogenetic profile method | FSW = 0.3586
| Class C:vacuole | ATMRP8 ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
AT3G59140 | PredictedEnriched domain pairGene neighbors methodPhylogenetic profile method | FSW = 0.3714
| Class C:vacuole | ATMRP14 ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
AT3G13100 | PredictedEnriched domain pairGene neighbors methodPhylogenetic profile method | FSW = 0.3852
| Class C:vacuole | ATMRP7 ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
AT3G62700 | PredictedEnriched domain pairGene neighbors methodPhylogenetic profile method | FSW = 0.4000
| Class C:vacuole | ATMRP10 ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
AT1G04120 | PredictedEnriched domain pairGene fusion methodPhylogenetic profile method | FSW = 0.4000
| Class C:vacuole | ATMRP5 ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES / SULFONYLUREA RECEPTOR |
AT2G07680 | PredictedEnriched domain pairPhylogenetic profile method | FSW = 0.3462
| Class C:vacuole | ATMRP11 ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
AT1G30400 | PredictedEnriched domain pairPhylogenetic profile method | FSW = 0.3103
| Class C:vacuole | MRP1 (ARABIDOPSIS THALIANA MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 1) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES / XENOBIOTIC-TRANSPORTING ATPASE |
AT1G18540 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2393
| Unknown | 60S RIBOSOMAL PROTEIN L6 (RPL6A) |
AT1G19660 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0826
| Unknown | WOUND-RESPONSIVE FAMILY PROTEIN |
AT5G20010 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2148
| Unknown | RAN-1 GTP BINDING / GTPASE/ PROTEIN BINDING |
AT2G45710 | PredictedAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MS | FSW = 0.1471
| Unknown | 40S RIBOSOMAL PROTEIN S27 (RPS27A) |
AT3G61430 | PredictedAffinity Capture-MSAffinity Capture-Western | FSW = 0.2280
| Unknown | PIP1A (PLASMA MEMBRANE INTRINSIC PROTEIN 1A) WATER CHANNEL |
AT4G34230 | PredictedAffinity Capture-MS | FSW = 0.0141
| Unknown | ATCAD5 (CINNAMYL ALCOHOL DEHYDROGENASE 5) CINNAMYL-ALCOHOL DEHYDROGENASE |
AT1G63290 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3472
| Unknown | RIBULOSE-PHOSPHATE 3-EPIMERASE CYTOSOLIC PUTATIVE / PENTOSE-5-PHOSPHATE 3-EPIMERASE PUTATIVE |
AT1G11250 | PredictedAffinity Capture-MS | FSW = 0.1916
| Unknown | SYP125 (SYNTAXIN OF PLANTS 125) SNAP RECEPTOR |
AT2G27530 | PredictedAffinity Capture-MS | FSW = 0.0228
| Unknown | PGY1 (PIGGYBACK1) RNA BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
AT5G47100 | PredictedReconstituted Complextwo hybridReconstituted ComplexReconstituted Complextwo hybridReconstituted Complextwo hybridinterologs mapping | FSW = 0.0497
| Unknown | CBL9 CALCIUM ION BINDING |
AT1G74060 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1493
| Unknown | 60S RIBOSOMAL PROTEIN L6 (RPL6B) |
AT2G47510 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.0637
| Unknown | FUM1 (FUMARASE 1) CATALYTIC/ FUMARATE HYDRATASE |
AT2G18450 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2180
| Unknown | SDH1-2 SUCCINATE DEHYDROGENASE |
AT2G14610 | PredictedAffinity Capture-MSAffinity Capture-MSReconstituted ComplexAffinity Capture-MSco-fractionationCo-fractionation | FSW = 0.1180
| Unknown | PR1 (PATHOGENESIS-RELATED GENE 1) |
AT2G33110 | PredictedAffinity Capture-MS | FSW = 0.1096
| Unknown | ATVAMP723 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 723) |
AT2G29540 | PredictedAffinity Capture-MS | FSW = 0.0048
| Unknown | ATRPC14 (RNA POLYMERASE 14 KDA SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION |
AT1G10940 | PredictedAffinity Capture-MS | FSW = 0.0080
| Unknown | SNRK24 (SNF1-RELATED PROTEIN KINASE 24) KINASE |
AT1G34580 | PredictedAffinity Capture-MS | FSW = 0.0353
| Unknown | MONOSACCHARIDE TRANSPORTER PUTATIVE |
AT2G16740 | PredictedAffinity Capture-MS | FSW = 0.1259
| Unknown | UBC29 (UBIQUITIN-CONJUGATING ENZYME 29) UBIQUITIN-PROTEIN LIGASE |
AT2G32220 | Predictedinterologs mappinginterologs mapping | FSW = 0.0852
| Unknown | 60S RIBOSOMAL PROTEIN L27 (RPL27A) |
AT1G15440 | Predictedtwo hybrid | FSW = 0.0240
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT2G16090 | PredictedAffinity Capture-MS | FSW = 0.2577
| Unknown | ZINC FINGER PROTEIN-RELATED |
AT2G44100 | PredictedAffinity Capture-MS | FSW = 0.0099
| Unknown | ATGDI1 (ARABIDOPSIS THALIANA GUANOSINE NUCLEOTIDE DIPHOSPHATE DISSOCIATION INHIBITOR 1) RAB GDP-DISSOCIATION INHIBITOR |
AT4G19880 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.0327
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RESPONSE TO CADMIUM ION LOCATED IN CHLOROPLAST EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S GLUTATHIONE S-TRANSFERASE PREDICTED (INTERPROIPR016639) GLUTATHIONE S-TRANSFERASE C-TERMINAL (INTERPROIPR004046) GLUTATHIONE S-TRANSFERASE C-TERMINAL-LIKE (INTERPROIPR010987) GLUTATHIONE S-TRANSFERASE/CHLORIDE CHANNEL C-TERMINAL (INTERPROIPR017933) THIOREDOXIN-LIKE FOLD (INTERPROIPR012336) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT5G450201) HAS 1635 BLAST HITS TO 1635 PROTEINS IN 489 SPECIES ARCHAE - 12 BACTERIA - 905 METAZOA - 23 FUNGI - 158 PLANTS - 57 VIRUSES - 0 OTHER EUKARYOTES - 480 (SOURCE NCBI BLINK) |
AT5G46150 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1736
| Unknown | LEM3 (LIGAND-EFFECT MODULATOR 3) FAMILY PROTEIN / CDC50 FAMILY PROTEIN |
AT3G47940 | PredictedAffinity Capture-MS | FSW = 0.1466
| Unknown | DNAJ HEAT SHOCK PROTEIN PUTATIVE |
AT4G12440 | PredictedAffinity Capture-MS | FSW = 0.0298
| Unknown | ADENINE PHOSPHORIBOSYLTRANSFERASE PUTATIVE |
AT4G26510 | PredictedAffinity Capture-MS | FSW = 0.0231
| Unknown | ATP BINDING / KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR / URACIL PHOSPHORIBOSYLTRANSFERASE |
AT5G01430 | PredictedAffinity Capture-MS | FSW = 0.0206
| Unknown | GOT1-LIKE FAMILY PROTEIN |
AT5G06420 | PredictedAffinity Capture-MS | FSW = 0.2268
| Unknown | ZINC FINGER (CCCH-TYPE/C3HC4-TYPE RING FINGER) FAMILY PROTEIN |
AT5G06600 | PredictedAffinity Capture-MS | FSW = 0.0443
| Unknown | UBP12 (UBIQUITIN-SPECIFIC PROTEASE 12) UBIQUITIN THIOLESTERASE/ UBIQUITIN-SPECIFIC PROTEASE |
AT5G17000 | PredictedAffinity Capture-MS | FSW = 0.0889
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
AT5G37850 | PredictedAffinity Capture-MS | FSW = 0.2640
| Unknown | SOS4 (SALT OVERLY SENSITIVE 4) KINASE/ PYRIDOXAL KINASE |
AT5G54200 | PredictedAffinity Capture-MS | FSW = 0.1556
| Unknown | WD-40 REPEAT FAMILY PROTEIN |
AT3G60160 | PredictedEnriched domain pairGene neighbors methodPhylogenetic profile method | FSW = 0.3714
| Unknown | ATMRP9 ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
AT1G30410 | PredictedEnriched domain pairPhylogenetic profile method | FSW = 0.4000
| Unknown | ATMRP13 ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
AT1G30420 | PredictedEnriched domain pairPhylogenetic profile method | FSW = 0.4000
| Unknown | ATMRP12 ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
AT1G35710 | PredictedGene fusion method | FSW = 0.0172
| Unknown | LEUCINE-RICH REPEAT TRANSMEMBRANE PROTEIN KINASE PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454