Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G47940 - ( DNAJ heat shock protein putative )
33 Proteins interacs with AT3G47940Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G36160 | PredictedAffinity Capture-MS | FSW = 0.2202
| Unknown | 40S RIBOSOMAL PROTEIN S14 (RPS14A) |
AT3G13080 | PredictedAffinity Capture-MS | FSW = 0.1466
| Unknown | ATMRP3 ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES / CHLOROPHYLL CATABOLITE TRANSPORTER/ GLUTATHIONE S-CONJUGATE-EXPORTING ATPASE |
AT3G22110 | PredictedAffinity Capture-MS | FSW = 0.0249
| Unknown | PAC1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT1G18540 | PredictedAffinity Capture-MS | FSW = 0.2731
| Unknown | 60S RIBOSOMAL PROTEIN L6 (RPL6A) |
AT5G24400 | PredictedAffinity Capture-MS | FSW = 0.2467
| Unknown | EMB2024 (EMBRYO DEFECTIVE 2024) 6-PHOSPHOGLUCONOLACTONASE/ CATALYTIC |
AT5G20010 | PredictedAffinity Capture-MS | FSW = 0.2660
| Unknown | RAN-1 GTP BINDING / GTPASE/ PROTEIN BINDING |
AT3G61430 | PredictedAffinity Capture-MS | FSW = 0.2420
| Unknown | PIP1A (PLASMA MEMBRANE INTRINSIC PROTEIN 1A) WATER CHANNEL |
AT4G28950 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1379
| Unknown | ROP9 (RHO-RELATED PROTEIN FROM PLANTS 9) GTP BINDING |
AT1G63290 | PredictedAffinity Capture-MS | FSW = 0.2816
| Unknown | RIBULOSE-PHOSPHATE 3-EPIMERASE CYTOSOLIC PUTATIVE / PENTOSE-5-PHOSPHATE 3-EPIMERASE PUTATIVE |
AT3G20890 | PredictedGene fusion method | FSW = 0.0493
| Unknown | RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT2G23460 | PredictedAffinity Capture-MSAffinity Capture-Western | FSW = 0.5418
| Unknown | XLG1 (EXTRA-LARGE G-PROTEIN 1) GUANYL NUCLEOTIDE BINDING / SIGNAL TRANSDUCER |
AT2G18450 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2511
| Unknown | SDH1-2 SUCCINATE DEHYDROGENASE |
AT3G16050 | PredictedAffinity Capture-MS | FSW = 0.0614
| Unknown | A37 PROTEIN HETERODIMERIZATION |
AT3G12530 | PredictedAffinity Capture-MS | FSW = 0.1829
| Unknown | PSF2 |
AT1G05785 | PredictedAffinity Capture-MS | FSW = 0.1219
| Unknown | GOT1-LIKE FAMILY PROTEIN |
AT1G14310 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSco-fractionationCo-fractionation | FSW = 0.1932
| Unknown | HALOACID DEHALOGENASE-LIKE HYDROLASE FAMILY PROTEIN |
AT2G03040 | PredictedAffinity Capture-MS | FSW = 0.2266
| Unknown | TRANSMEMBRANE PROTEIN-RELATED |
AT2G16090 | PredictedAffinity Capture-MS | FSW = 0.2915
| Unknown | ZINC FINGER PROTEIN-RELATED |
AT3G52390 | PredictedAffinity Capture-MS | FSW = 0.1391
| Unknown | TATD-RELATED DEOXYRIBONUCLEASE FAMILY PROTEIN |
AT4G36800 | PredictedAffinity Capture-MS | FSW = 0.2870
| Unknown | RCE1 (RUB1 CONJUGATING ENZYME 1) NEDD8 LIGASE/ SMALL CONJUGATING PROTEIN LIGASE |
AT5G24840 | PredictedSynthetic Lethality | FSW = 0.0082
| Unknown | TRNA (GUANINE-N7-)-METHYLTRANSFERASE |
AT5G40530 | PredictedAffinity Capture-MS | FSW = 0.0827
| Unknown | EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S METHYLTRANSFERASE-RELATED (INTERPROIPR007823) HAS 293 BLAST HITS TO 293 PROTEINS IN 141 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 93 FUNGI - 88 PLANTS - 22 VIRUSES - 0 OTHER EUKARYOTES - 90 (SOURCE NCBI BLINK) |
AT5G46150 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1813
| Unknown | LEM3 (LIGAND-EFFECT MODULATOR 3) FAMILY PROTEIN / CDC50 FAMILY PROTEIN |
AT5G60870 | PredictedAffinity Capture-MS | FSW = 0.0735
| Unknown | REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN |
AT5G67380 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1854
| Unknown | CKA1 (CASEIN KINASE ALPHA 1) KINASE |
AT4G28480 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.3386
| Unknown | DNAJ HEAT SHOCK FAMILY PROTEIN |
AT5G25530 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2438
| Unknown | DNAJ HEAT SHOCK PROTEIN PUTATIVE |
AT3G08910 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.1966
| Unknown | DNAJ HEAT SHOCK PROTEIN PUTATIVE |
AT1G59725 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2776
| Unknown | DNAJ HEAT SHOCK PROTEIN PUTATIVE |
AT5G01390 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1069
| Unknown | DNAJ HEAT SHOCK PROTEIN PUTATIVE |
AT2G20560 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1838
| Unknown | DNAJ HEAT SHOCK FAMILY PROTEIN |
AT1G10350 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1299
| Unknown | DNAJ HEAT SHOCK PROTEIN PUTATIVE |
AT1G34370 | PredictedGene fusion method | FSW = 0.0295
| Unknown | STOP1 (SENSITIVE TO PROTON RHIZOTOXICITY 1) NUCLEIC ACID BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454