Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G03040 - ( transmembrane protein-related )
91 Proteins interacs with AT2G03040Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G33120 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0049
| Unknown | SAR1 (SYNAPTOBREVIN-RELATED PROTEIN 1) |
AT3G49910 | PredictedAffinity Capture-MS | FSW = 0.1910
| Unknown | 60S RIBOSOMAL PROTEIN L26 (RPL26A) |
AT2G36160 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3584
| Unknown | 40S RIBOSOMAL PROTEIN S14 (RPS14A) |
AT4G38510 | PredictedAffinity Capture-MS | FSW = 0.0140
| Unknown | VACUOLAR ATP SYNTHASE SUBUNIT B PUTATIVE / V-ATPASE B SUBUNIT PUTATIVE / VACUOLAR PROTON PUMP B SUBUNIT PUTATIVE / V-ATPASE 57 KDA SUBUNIT PUTATIVE |
AT3G12580 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2482
| Unknown | HSP70 (HEAT SHOCK PROTEIN 70) ATP BINDING |
AT1G01100 | PredictedAffinity Capture-MS | FSW = 0.0565
| Unknown | 60S ACIDIC RIBOSOMAL PROTEIN P1 (RPP1A) |
AT3G20390 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4184
| Unknown | ENDORIBONUCLEASE L-PSP FAMILY PROTEIN |
AT1G18540 | PredictedAffinity Capture-MS | FSW = 0.3971
| Unknown | 60S RIBOSOMAL PROTEIN L6 (RPL6A) |
AT3G22890 | PredictedSynthetic Lethality | FSW = 0.0083
| Unknown | APS1 (ATP SULFURYLASE 1) SULFATE ADENYLYLTRANSFERASE (ATP) |
AT5G24400 | PredictedAffinity Capture-MS | FSW = 0.4232
| Unknown | EMB2024 (EMBRYO DEFECTIVE 2024) 6-PHOSPHOGLUCONOLACTONASE/ CATALYTIC |
AT5G65430 | PredictedAffinity Capture-MS | FSW = 0.0736
| Unknown | GRF8 (GENERAL REGULATORY FACTOR 8) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT2G31170 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4853
| Unknown | SYCO ARATH ATP BINDING / AMINOACYL-TRNA LIGASE/ CYSTEINE-TRNA LIGASE/ NUCLEOTIDE BINDING |
AT4G26970 | PredictedAffinity Capture-MS | FSW = 0.1600
| Unknown | ACONITATE HYDRATASE/ COPPER ION BINDING |
AT2G25140 | PredictedAffinity Capture-MS | FSW = 0.0512
| Unknown | CLPB4 (CASEIN LYTIC PROTEINASE B4) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT1G21640 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3750
| Unknown | NADK2 NAD+ KINASE/ CALMODULIN BINDING |
AT3G14930 | PredictedAffinity Capture-MS | FSW = 0.0115
| Unknown | HEME1 UROPORPHYRINOGEN DECARBOXYLASE |
AT5G15450 | PredictedAffinity Capture-MS | FSW = 0.0204
| Unknown | CLPB3 (CASEIN LYTIC PROTEINASE B3) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT4G23430 | PredictedAffinity Capture-MS | FSW = 0.0958
| Unknown | SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN |
AT4G30950 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0230
| Unknown | FAD6 (FATTY ACID DESATURASE 6) OMEGA-6 FATTY ACID DESATURASE |
AT5G20010 | PredictedAffinity Capture-MS | FSW = 0.3863
| Unknown | RAN-1 GTP BINDING / GTPASE/ PROTEIN BINDING |
AT3G61430 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.3879
| Unknown | PIP1A (PLASMA MEMBRANE INTRINSIC PROTEIN 1A) WATER CHANNEL |
AT3G09740 | PredictedAffinity Capture-MS | FSW = 0.2507
| Unknown | SYP71 (SYNTAXIN OF PLANTS 71) PROTEIN TRANSPORTER |
AT1G63290 | PredictedAffinity Capture-MS | FSW = 0.4167
| Unknown | RIBULOSE-PHOSPHATE 3-EPIMERASE CYTOSOLIC PUTATIVE / PENTOSE-5-PHOSPHATE 3-EPIMERASE PUTATIVE |
AT4G22120 | PredictedAffinity Capture-MS | FSW = 0.1561
| Unknown | EARLY-RESPONSIVE TO DEHYDRATION PROTEIN-RELATED / ERD PROTEIN-RELATED |
AT1G20760 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4408
| Unknown | CALCIUM-BINDING EF HAND FAMILY PROTEIN |
AT5G22780 | PredictedAffinity Capture-MS | FSW = 0.0238
| Unknown | ADAPTIN FAMILY PROTEIN |
AT4G35310 | PredictedAffinity Capture-MS | FSW = 0.4649
| Unknown | CPK5 (CALMODULIN-DOMAIN PROTEIN KINASE 5) ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT4G34430 | PredictedAffinity Capture-MS | FSW = 0.0044
| Unknown | CHB3 DNA BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING |
AT1G74060 | PredictedAffinity Capture-MS | FSW = 0.1631
| Unknown | 60S RIBOSOMAL PROTEIN L6 (RPL6B) |
AT2G47640 | PredictedAffinity Capture-MS | FSW = 0.0350
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN D2 PUTATIVE / SNRNP CORE PROTEIN D2 PUTATIVE / SM PROTEIN D2 PUTATIVE |
AT4G26600 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2629
| Unknown | NUCLEOLAR PROTEIN PUTATIVE |
AT4G13980 | Predictedtwo hybrid | FSW = 0.0316
| Unknown | AT-HSFA5 DNA BINDING / TRANSCRIPTION FACTOR |
AT3G13920 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0078
| Unknown | EIF4A1 (EUKARYOTIC TRANSLATION INITIATION FACTOR 4A1) ATP-DEPENDENT HELICASE/ TRANSLATION INITIATION FACTOR |
AT2G23460 | PredictedAffinity Capture-MS | FSW = 0.2976
| Unknown | XLG1 (EXTRA-LARGE G-PROTEIN 1) GUANYL NUCLEOTIDE BINDING / SIGNAL TRANSDUCER |
AT2G18450 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4259
| Unknown | SDH1-2 SUCCINATE DEHYDROGENASE |
AT4G30990 | PredictedAffinity Capture-MS | FSW = 0.1493
| Unknown | BINDING |
AT4G33720 | PredictedAffinity Capture-MS | FSW = 0.0573
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT3G08730 | PredictedAffinity Capture-MS | FSW = 0.1066
| Unknown | PK1 (PROTEIN-SERINE KINASE 1) KINASE/ PROTEIN BINDING / PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT3G16050 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2624
| Unknown | A37 PROTEIN HETERODIMERIZATION |
AT1G18100 | Predictedtwo hybrid | FSW = 0.0084
| Unknown | E12A11 PHOSPHATIDYLETHANOLAMINE BINDING |
AT3G12530 | PredictedAffinity Capture-MS | FSW = 0.2748
| Unknown | PSF2 |
AT1G24706 | PredictedAffinity Capture-MS | FSW = 0.1908
| Unknown | UNKNOWN PROTEIN |
AT1G51770 | PredictedAffinity Capture-MS | FSW = 0.0891
| Unknown | UNKNOWN PROTEIN |
AT1G54290 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2823
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE |
AT1G55730 | PredictedAffinity Capture-MS | FSW = 0.2648
| Unknown | ATCAX5 CALCIUMCATION ANTIPORTER/ CATIONCATION ANTIPORTER |
AT1G34460 | PredictedAffinity Capture-MS | FSW = 0.0613
| Unknown | CYCB15 (CYCLIN B15) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT1G68310 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0202
| Unknown | VACUOLAR SORTING SIGNAL BINDING |
AT2G41530 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1602
| Unknown | SFGH (S-FORMYLGLUTATHIONE HYDROLASE) S-FORMYLGLUTATHIONE HYDROLASE/ HYDROLASE ACTING ON ESTER BONDS |
AT3G03590 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2386
| Unknown | SWIB COMPLEX BAF60B DOMAIN-CONTAINING PROTEIN |
AT3G05960 | Predictedinterologs mapping | FSW = 0.1450
| Unknown | STP6 (SUGAR TRANSPORTER 6) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ MONOSACCHARIDE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT3G11900 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2235
| Unknown | ANT1 (AROMATIC AND NEUTRAL TRANSPORTER 1) AMINO ACID TRANSMEMBRANE TRANSPORTER/ AROMATIC AMINO ACID TRANSMEMBRANE TRANSPORTER/ NEUTRAL AMINO ACID TRANSMEMBRANE TRANSPORTER |
AT3G12200 | PredictedAffinity Capture-MS | FSW = 0.0362
| Unknown | ATNEK7 (NIMA-RELATED KINASE7) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT3G59410 | PredictedAffinity Capture-MS | FSW = 0.1485
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT3G60860 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0084
| Unknown | GUANINE NUCLEOTIDE EXCHANGE FAMILY PROTEIN |
AT3G62960 | PredictedAffinity Capture-MS | FSW = 0.0102
| Unknown | GLUTAREDOXIN FAMILY PROTEIN |
AT3G63280 | PredictedAffinity Capture-MS | FSW = 0.0074
| Unknown | ATNEK4 (NIMA-RELATED KINASE 4) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT4G04700 | PredictedAffinity Capture-MS | FSW = 0.0379
| Unknown | CPK27 ATP BINDING / CALCIUM ION BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT5G16170 | PredictedSynthetic Lethality | FSW = 0.0098
| Unknown | UNKNOWN PROTEIN |
AT5G19150 | PredictedAffinity Capture-MS | FSW = 0.1221
| Unknown | CARBOHYDRATE KINASE FAMILY |
AT5G19360 | PredictedAffinity Capture-MS | FSW = 0.0142
| Unknown | CPK34 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G44635 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0178
| Unknown | MINICHROMOSOME MAINTENANCE FAMILY PROTEIN / MCM FAMILY PROTEIN |
AT5G45620 | PredictedSynthetic Lethality | FSW = 0.0173
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN9) |
AT5G46150 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3628
| Unknown | LEM3 (LIGAND-EFFECT MODULATOR 3) FAMILY PROTEIN / CDC50 FAMILY PROTEIN |
AT5G60870 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0502
| Unknown | REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN |
AT5G67380 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2338
| Unknown | CKA1 (CASEIN KINASE ALPHA 1) KINASE |
AT5G67510 | Predictedinterologs mapping | FSW = 0.0223
| Unknown | 60S RIBOSOMAL PROTEIN L26 (RPL26B) |
AT2G14560 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0398
| Unknown | LURP1 (LATE UPREGULATED IN RESPONSE TO HYALOPERONOSPORA PARASITICA) |
AT2G16090 | PredictedAffinity Capture-MS | FSW = 0.4302
| Unknown | ZINC FINGER PROTEIN-RELATED |
AT2G16740 | PredictedAffinity Capture-MS | FSW = 0.3459
| Unknown | UBC29 (UBIQUITIN-CONJUGATING ENZYME 29) UBIQUITIN-PROTEIN LIGASE |
AT2G19910 | PredictedAffinity Capture-MS | FSW = 0.2755
| Unknown | RNA-DEPENDENT RNA POLYMERASE FAMILY PROTEIN |
AT2G22040 | PredictedAffinity Capture-MS | FSW = 0.0175
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT2G37540 | PredictedAffinity Capture-MS | FSW = 0.4033
| Unknown | SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN |
AT2G43360 | PredictedAffinity Capture-MS | FSW = 0.1432
| Unknown | BIO2 (BIOTIN AUXOTROPH 2) BIOTIN SYNTHASE |
AT3G18850 | PredictedAffinity Capture-MS | FSW = 0.1013
| Unknown | LPAT5 ACYLTRANSFERASE |
AT3G20650 | PredictedAffinity Capture-MS | FSW = 0.0939
| Unknown | MRNA CAPPING ENZYME FAMILY PROTEIN |
AT3G23570 | PredictedAffinity Capture-MS | FSW = 0.3064
| Unknown | DIENELACTONE HYDROLASE FAMILY PROTEIN |
AT3G47940 | PredictedAffinity Capture-MS | FSW = 0.2266
| Unknown | DNAJ HEAT SHOCK PROTEIN PUTATIVE |
AT3G52390 | PredictedAffinity Capture-MS | FSW = 0.1802
| Unknown | TATD-RELATED DEOXYRIBONUCLEASE FAMILY PROTEIN |
AT3G53730 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1462
| Unknown | HISTONE H4 |
AT4G04955 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0612
| Unknown | ATALN (ARABIDOPSIS ALLANTOINASE) ALLANTOINASE/ HYDROLASE |
AT4G11330 | PredictedAffinity Capture-MS | FSW = 0.1781
| Unknown | ATMPK5 (MAP KINASE 5) MAP KINASE/ KINASE |
AT4G21800 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0422
| Unknown | QQT2 (QUATRE-QUART2) ATP BINDING / NUCLEOTIDE BINDING |
AT4G36800 | PredictedAffinity Capture-MS | FSW = 0.4593
| Unknown | RCE1 (RUB1 CONJUGATING ENZYME 1) NEDD8 LIGASE/ SMALL CONJUGATING PROTEIN LIGASE |
AT4G39330 | PredictedAffinity Capture-MS | FSW = 0.2604
| Unknown | CAD9 (CINNAMYL ALCOHOL DEHYDROGENASE 9) BINDING / CATALYTIC/ OXIDOREDUCTASE/ ZINC ION BINDING |
AT5G06420 | PredictedAffinity Capture-MS | FSW = 0.4109
| Unknown | ZINC FINGER (CCCH-TYPE/C3HC4-TYPE RING FINGER) FAMILY PROTEIN |
AT5G16750 | PredictedAffinity Capture-MS | FSW = 0.2611
| Unknown | TOZ (TORMOZEMBRYO DEFECTIVE) NUCLEOTIDE BINDING |
AT5G17000 | PredictedAffinity Capture-MS | FSW = 0.3367
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
AT5G24510 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0229
| Unknown | 60S ACIDIC RIBOSOMAL PROTEIN P1 PUTATIVE |
AT5G37850 | PredictedAffinity Capture-MS | FSW = 0.4020
| Unknown | SOS4 (SALT OVERLY SENSITIVE 4) KINASE/ PYRIDOXAL KINASE |
AT5G41190 | PredictedAffinity Capture-MS | FSW = 0.1204
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NIN ONE BINDING (NOB1) ZN-RIBBON LIKE (INTERPROIPR014881) D-SITE 20S PRE-RRNA NUCLEASE (INTERPROIPR017117) HAS 855 BLAST HITS TO 653 PROTEINS IN 196 SPECIES ARCHAE - 53 BACTERIA - 16 METAZOA - 335 FUNGI - 168 PLANTS - 29 VIRUSES - 10 OTHER EUKARYOTES - 244 (SOURCE NCBI BLINK) |
AT5G54200 | PredictedAffinity Capture-MS | FSW = 0.4050
| Unknown | WD-40 REPEAT FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454