Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G24510 - ( 60s acidic ribosomal protein P1 putative )
39 Proteins interacs with AT5G24510Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G09200 | Predictedtwo hybrid | FSW = 0.0313
| Unknown | 60S ACIDIC RIBOSOMAL PROTEIN P0 (RPP0B) |
AT4G30920 | Predictedtwo hybrid | FSW = 0.0254
| Unknown | CYTOSOL AMINOPEPTIDASE FAMILY PROTEIN |
AT1G01100 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1545
| Unknown | 60S ACIDIC RIBOSOMAL PROTEIN P1 (RPP1A) |
AT5G12010 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0289
| Unknown | UNKNOWN PROTEIN |
AT4G13940 | Predictedtwo hybrid | FSW = 0.0173
| Unknown | MEE58 (MATERNAL EFFECT EMBRYO ARREST 58) ADENOSYLHOMOCYSTEINASE/ COPPER ION BINDING |
AT5G10450 | Predictedtwo hybrid | FSW = 0.0075
| Unknown | GRF6 (G-BOX REGULATING FACTOR 6) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT5G64270 | Predictedtwo hybrid | FSW = 0.0463
| Unknown | SPLICING FACTOR PUTATIVE |
AT3G23600 | Predictedinterologs mapping | FSW = 0.1524
| Unknown | DIENELACTONE HYDROLASE FAMILY PROTEIN |
AT5G47510 | PredictedAffinity Capture-MS | FSW = 0.0226
| Unknown | SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLYCERIDE TRANSFER FAMILY PROTEIN |
AT5G47700 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.2215
| Unknown | 60S ACIDIC RIBOSOMAL PROTEIN P1 (RPP1C) |
AT5G62760 | Predictedtwo hybrid | FSW = 0.0454
| Unknown | NUCLEAR PROTEIN ZAP-RELATED |
AT4G13980 | Predictedbiochemical | FSW = 0.0261
| Unknown | AT-HSFA5 DNA BINDING / TRANSCRIPTION FACTOR |
AT4G01850 | Predictedsynthetic growth defect | FSW = 0.0766
| Unknown | SAM-2 (S-ADENOSYLMETHIONINE SYNTHETASE 2) COPPER ION BINDING / METHIONINE ADENOSYLTRANSFERASE |
AT2G40290 | PredictedAffinity Capture-MS | FSW = 0.0381
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 1 PUTATIVE / EIF-2A PUTATIVE / EIF-2-ALPHA PUTATIVE |
AT1G19730 | PredictedAffinity Capture-Western | FSW = 0.0125
| Unknown | ATTRX4 OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS DISULFIDE AS ACCEPTOR |
AT4G17190 | PredictedAffinity Capture-RNA | FSW = 0.0216
| Unknown | FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) DIMETHYLALLYLTRANSTRANSFERASE/ GERANYLTRANSTRANSFERASE |
AT5G40040 | Predictedtwo hybridtwo hybrid | FSW = 0.0250
| Unknown | 60S ACIDIC RIBOSOMAL PROTEIN P2 (RPP2E) |
AT1G77670 | Predictedtwo hybrid | FSW = 0.0289
| Unknown | AMINOTRANSFERASE CLASS I AND II FAMILY PROTEIN |
AT5G16070 | Predictedtwo hybrid | FSW = 0.0523
| Unknown | CHAPERONIN PUTATIVE |
AT1G71790 | Predictedtwo hybrid | FSW = 0.0129
| Unknown | F-ACTIN CAPPING PROTEIN BETA SUBUNIT FAMILY PROTEIN |
AT3G15150 | Predictedtwo hybrid | FSW = 0.0544
| Unknown | ZINC ION BINDING |
AT3G46220 | Predictedtwo hybrid | FSW = 0.0310
| Unknown | UNKNOWN PROTEIN |
AT5G22110 | Predictedtwo hybrid | FSW = 0.0186
| Unknown | ATDPB2 (ARABIDOPSIS THALIANA DNA POLYMERASE EPSILON SUBUNIT B2) DNA BINDING / DNA-DIRECTED DNA POLYMERASE/ NUCLEIC ACID BINDING |
AT5G47480 | Predictedtwo hybrid | FSW = 0.0238
| Unknown | UNKNOWN PROTEIN |
AT5G26360 | Predictedtwo hybrid | FSW = 0.0473
| Unknown | CHAPERONIN PUTATIVE |
AT5G46025 | Predictedtwo hybrid | FSW = 0.0229
| Unknown | RAS-RELATED GTP-BINDING FAMILY PROTEIN |
AT5G49310 | Predictedtwo hybrid | FSW = 0.0081
| Unknown | IMPA-5 (IMPORTIN ALPHA ISOFORM 5) BINDING / PROTEIN TRANSPORTER |
AT2G38490 | PredictedColocalizationReconstituted ComplexAffinity Capture-Western | FSW = 0.0178
| Unknown | CIPK22 (CBL-INTERACTING PROTEIN KINASE 22) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT2G46710 | PredictedReconstituted Complex | FSW = 0.0948
| Unknown | RAC GTPASE ACTIVATING PROTEIN PUTATIVE |
AT4G21800 | PredictedAffinity Capture-MS | FSW = 0.0309
| Unknown | QQT2 (QUATRE-QUART2) ATP BINDING / NUCLEOTIDE BINDING |
AT1G10210 | PredictedAffinity Capture-MS | FSW = 0.0288
| Unknown | ATMPK1 (MITOGEN-ACTIVATED PROTEIN KINASE 1) MAP KINASE/ KINASE |
AT1G80510 | PredictedSynthetic LethalityPhenotypic Enhancement | FSW = 0.1695
| Unknown | AMINO ACID TRANSPORTER FAMILY PROTEIN |
AT2G03040 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0229
| Unknown | TRANSMEMBRANE PROTEIN-RELATED |
AT2G34180 | PredictedAffinity Capture-MS | FSW = 0.0417
| Unknown | CIPK13 (CBL-INTERACTING PROTEIN KINASE 13) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT2G48100 | PredictedSynthetic Lethality | FSW = 0.0250
| Unknown | EXONUCLEASE FAMILY PROTEIN |
AT3G60240 | PredictedSynthetic Lethality | FSW = 0.0472
| Unknown | EIF4G (EUKARYOTIC TRANSLATION INITIATION FACTOR 4G) TRANSLATION INITIATION FACTOR |
AT5G01430 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0173
| Unknown | GOT1-LIKE FAMILY PROTEIN |
AT5G19510 | PredictedSynthetic LethalityPhenotypic Enhancement | FSW = 0.1538
| Unknown | ELONGATION FACTOR 1B ALPHA-SUBUNIT 2 (EEF1BALPHA2) |
AT4G00810 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0482
| Unknown | 60S ACIDIC RIBOSOMAL PROTEIN P1 (RPP1B) |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454