Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G47510 - ( SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein )
33 Proteins interacs with AT5G47510Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G60820 | PredictedAffinity Capture-MS | FSW = 0.0177
| Class C:plasma membrane | PBF1 PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT1G16030 | PredictedSynthetic Lethality | FSW = 0.0229
| Class C:plasma membrane | HSP70B (HEAT SHOCK PROTEIN 70B) ATP BINDING |
AT1G33140 | PredictedSynthetic Lethality | FSW = 0.0313
| Unknown | PGY2 (PIGGYBACK2) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G16240 | PredictedAffinity Capture-Western | FSW = 0.0450
| Unknown | SYP51 (SYNTAXIN OF PLANTS 51) SNAP RECEPTOR |
AT3G26590 | Predictedsynthetic growth defect | FSW = 0.0221
| Unknown | MATE EFFLUX FAMILY PROTEIN |
AT5G57870 | Predictedsynthetic growth defect | FSW = 0.0324
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 4F PUTATIVE / EIF-4F PUTATIVE |
AT3G55400 | Predictedsynthetic growth defect | FSW = 0.0342
| Unknown | OVA1 (OVULE ABORTION 1) ATP BINDING / AMINOACYL-TRNA LIGASE/ METHIONINE-TRNA LIGASE/ NUCLEOTIDE BINDING |
AT4G26970 | Predictedsynthetic growth defectsynthetic growth defectAffinity Capture-Western | FSW = 0.0367
| Unknown | ACONITATE HYDRATASE/ COPPER ION BINDING |
AT5G03650 | Predictedsynthetic growth defect | FSW = 0.1322
| Unknown | SBE22 (STARCH BRANCHING ENZYME 22) 14-ALPHA-GLUCAN BRANCHING ENZYME |
AT2G33340 | PredictedPhenotypic Enhancement | FSW = 0.0078
| Unknown | NUCLEOTIDE BINDING / UBIQUITIN-PROTEIN LIGASE |
AT5G16150 | Predictedsynthetic growth defect | FSW = 0.0351
| Unknown | PGLCT (PLASTIDIC GLC TRANSLOCATOR) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT3G57050 | PredictedSynthetic Lethality | FSW = 0.1112
| Unknown | CBL (CYSTATHIONINE BETA-LYASE) CYSTATHIONINE BETA-LYASE |
AT2G07640 | Predictedsynthetic growth defectsynthetic growth defect | FSW = 0.1059
| Unknown | D2D4-DIENOYL-COA REDUCTASE-RELATED |
AT4G13980 | Predictedsynthetic growth defect | FSW = 0.0300
| Unknown | AT-HSFA5 DNA BINDING / TRANSCRIPTION FACTOR |
AT3G18600 | Predictedsynthetic growth defectPhenotypic Enhancement | FSW = 0.0583
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
AT2G41380 | PredictedAffinity Capture-Western | FSW = 0.0529
| Unknown | EMBRYO-ABUNDANT PROTEIN-RELATED |
AT3G57240 | Predictedsynthetic growth defectAffinity Capture-Western | FSW = 0.2250
| Unknown | BG3 (BETA-13-GLUCANASE 3) CELLULASE/ HYDROLASE HYDROLYZING O-GLYCOSYL COMPOUNDS |
AT1G18100 | PredictedAffinity Capture-MS | FSW = 0.0216
| Unknown | E12A11 PHOSPHATIDYLETHANOLAMINE BINDING |
AT5G59720 | PredictedSynthetic Lethality | FSW = 0.1068
| Unknown | HSP182 (HEAT SHOCK PROTEIN 182) |
AT1G34580 | Predictedinterologs mapping | FSW = 0.0191
| Unknown | MONOSACCHARIDE TRANSPORTER PUTATIVE |
AT1G58340 | PredictedAffinity Capture-WesternColocalization | FSW = 0.0649
| Unknown | ZF14 ANTIPORTER/ DRUG TRANSPORTER/ TRANSPORTER |
AT1G80710 | Predictedinterologs mapping | FSW = 0.0375
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT2G26420 | PredictedAffinity Capture-WesternColocalization | FSW = 0.0494
| Unknown | PIP5K3 (1-PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE 3) 1-PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE |
AT2G35795 | Predictedsynthetic growth defect | FSW = 0.0317
| Unknown | DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN |
AT2G43190 | Predictedinterologs mapping | FSW = 0.0924
| Unknown | RIBONUCLEASE P FAMILY PROTEIN |
AT3G45590 | Predictedsynthetic growth defectsynthetic growth defectAffinity Capture-Westernsynthetic growth defectAffinity Capture-Western | FSW = 0.1741
| Unknown | ATSEN1 (SPLICING ENDONUCLEASE 1) NUCLEASE/ NUCLEIC ACID BINDING / TRNA-INTRON ENDONUCLEASE |
AT4G19880 | PredictedPhenotypic Enhancement | FSW = 0.0342
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RESPONSE TO CADMIUM ION LOCATED IN CHLOROPLAST EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S GLUTATHIONE S-TRANSFERASE PREDICTED (INTERPROIPR016639) GLUTATHIONE S-TRANSFERASE C-TERMINAL (INTERPROIPR004046) GLUTATHIONE S-TRANSFERASE C-TERMINAL-LIKE (INTERPROIPR010987) GLUTATHIONE S-TRANSFERASE/CHLORIDE CHANNEL C-TERMINAL (INTERPROIPR017933) THIOREDOXIN-LIKE FOLD (INTERPROIPR012336) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT5G450201) HAS 1635 BLAST HITS TO 1635 PROTEINS IN 489 SPECIES ARCHAE - 12 BACTERIA - 905 METAZOA - 23 FUNGI - 158 PLANTS - 57 VIRUSES - 0 OTHER EUKARYOTES - 480 (SOURCE NCBI BLINK) |
AT5G39400 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0295
| Unknown | PTEN1 PHOSPHATASE |
AT1G34340 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.1005
| Unknown | ESTERASE/LIPASE/THIOESTERASE FAMILY PROTEIN |
AT4G33950 | PredictedAffinity Capture-WesternReconstituted Complex | FSW = 0.0401
| Unknown | OST1 (OPEN STOMATA 1) CALCIUM-DEPENDENT PROTEIN SERINE/THREONINE KINASE/ KINASE/ PROTEIN KINASE |
AT5G24510 | PredictedAffinity Capture-MS | FSW = 0.0226
| Unknown | 60S ACIDIC RIBOSOMAL PROTEIN P1 PUTATIVE |
AT5G65860 | PredictedSynthetic LethalityPhenotypic Enhancement | FSW = 0.1221
| Unknown | ANKYRIN REPEAT FAMILY PROTEIN |
AT2G44100 | PredictedPhenotypic SuppressionSynthetic Lethalityinterologs mapping | FSW = 0.0148
| Unknown | ATGDI1 (ARABIDOPSIS THALIANA GUANOSINE NUCLEOTIDE DIPHOSPHATE DISSOCIATION INHIBITOR 1) RAB GDP-DISSOCIATION INHIBITOR |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454