Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G26970 - ( aconitate hydratase/ copper ion binding )
91 Proteins interacs with AT4G26970Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G05710 | PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.1468
| Class C:plastidmitochondrion | ACONITATE HYDRATASE CYTOPLASMIC PUTATIVE / CITRATE HYDRO-LYASE/ACONITASE PUTATIVE |
AT2G31170 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2460
| Class C:plastidmitochondrion | SYCO ARATH ATP BINDING / AMINOACYL-TRNA LIGASE/ CYSTEINE-TRNA LIGASE/ NUCLEOTIDE BINDING |
AT2G01250 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2361
| Class C:plastid | 60S RIBOSOMAL PROTEIN L7 (RPL7B) |
AT5G01410 | PredictedSynthetic Lethality | FSW = 0.0076
| Class C:plastid | RSR4 (REDUCED SUGAR RESPONSE 4) PROTEIN HETERODIMERIZATION/ PROTEIN HOMODIMERIZATION |
AT3G11940 | PredictedAffinity Capture-MS | FSW = 0.0333
| Class C:plastid | ATRPS5A (RIBOSOMAL PROTEIN 5A) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT5G24400 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2183
| Class C:plastid | EMB2024 (EMBRYO DEFECTIVE 2024) 6-PHOSPHOGLUCONOLACTONASE/ CATALYTIC |
AT1G51040 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2226
| Class C:plastid | PHOSPHATIDYLINOSITOL 4-KINASE PUTATIVE |
AT4G23430 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4077
| Class C:plastid | SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN |
AT2G29990 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4144
| Class C:mitochondrion | NDA2 (ALTERNATIVE NAD(P)H DEHYDROGENASE 2) FAD BINDING / NADH DEHYDROGENASE/ OXIDOREDUCTASE |
AT2G19860 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2709
| Class C:mitochondrion | HXK2 (HEXOKINASE 2) ATP BINDING / FRUCTOKINASE/ GLUCOKINASE/ HEXOKINASE |
AT4G35830 | PredictedEnriched domain pairGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.1237
| Class C:mitochondrion | ACONITATE HYDRATASE CYTOPLASMIC / CITRATE HYDRO-LYASE / ACONITASE (ACO) |
AT3G10920 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4050
| Class C:mitochondrion | MSD1 (MANGANESE SUPEROXIDE DISMUTASE 1) METAL ION BINDING / SUPEROXIDE DISMUTASE |
AT3G49010 | PredictedAffinity Capture-MS | FSW = 0.0212
| Unknown | ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT2G20450 | PredictedAffinity Capture-MS | FSW = 0.2538
| Unknown | 60S RIBOSOMAL PROTEIN L14 (RPL14A) |
AT2G44610 | Predictedinteraction prediction | FSW = 0.0017
| Unknown | RAB6A GTP BINDING / PROTEIN BINDING |
AT1G54270 | PredictedAffinity Capture-MS | FSW = 0.0538
| Unknown | EIF4A-2 ATP-DEPENDENT HELICASE/ TRANSLATION INITIATION FACTOR |
AT3G49360 | PredictedAffinity Capture-MS | FSW = 0.0370
| Unknown | GLUCOSAMINE/GALACTOSAMINE-6-PHOSPHATE ISOMERASE FAMILY PROTEIN |
AT5G24780 | PredictedAffinity Capture-MS | FSW = 0.3832
| Unknown | VSP1 (VEGETATIVE STORAGE PROTEIN 1) ACID PHOSPHATASE/ TRANSCRIPTION FACTOR BINDING |
AT3G62870 | Predictedsynthetic growth defect | FSW = 0.0451
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT2G06510 | Predictedinteraction prediction | FSW = 0.0219
| Unknown | RPA1A (REPLICATION PROTEIN A 1A) DNA BINDING / NUCLEIC ACID BINDING |
AT1G75840 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3310
| Unknown | ARAC5 (RAC-LIKE GTP BINDING PROTEIN 5) GTP BINDING / GTPASE |
AT1G27970 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4001
| Unknown | NTF2B (NUCLEAR TRANSPORT FACTOR 2B) RAN GTPASE BINDING / PROTEIN TRANSPORTER |
AT2G21540 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.5429
| Unknown | SFH3 (SEC14-LIKE 3) PHOSPHATIDYLINOSITOL TRANSPORTER |
AT5G47510 | Predictedsynthetic growth defectsynthetic growth defectAffinity Capture-Western | FSW = 0.0367
| Unknown | SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLYCERIDE TRANSFER FAMILY PROTEIN |
AT1G13320 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1301
| Unknown | PP2AA3 (PROTEIN PHOSPHATASE 2A SUBUNIT A3) BINDING / PROTEIN PHOSPHATASE TYPE 2A REGULATOR |
AT5G62300 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3650
| Unknown | 40S RIBOSOMAL PROTEIN S20 (RPS20C) |
AT4G22120 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.5183
| Unknown | EARLY-RESPONSIVE TO DEHYDRATION PROTEIN-RELATED / ERD PROTEIN-RELATED |
AT4G24400 | PredictedAffinity Capture-MS | FSW = 0.1782
| Unknown | CIPK8 (CBL-INTERACTING PROTEIN KINASE 8) KINASE/ PROTEIN KINASE |
AT2G07640 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.1570
| Unknown | D2D4-DIENOYL-COA REDUCTASE-RELATED |
AT2G40360 | Predictedinteraction prediction | FSW = 0.0074
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT5G57015 | Predictedinteraction prediction | FSW = 0.0145
| Unknown | CKL12 (CASEIN KINASE I-LIKE 12) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT2G47640 | PredictedAffinity Capture-MS | FSW = 0.1269
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN D2 PUTATIVE / SNRNP CORE PROTEIN D2 PUTATIVE / SM PROTEIN D2 PUTATIVE |
AT5G44500 | PredictedAffinity Capture-MS | FSW = 0.2294
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN ASSOCIATED PROTEIN B PUTATIVE / SNRNP-B PUTATIVE / SM PROTEIN B PUTATIVE |
AT1G03190 | Predictedinteraction prediction | FSW = 0.0141
| Unknown | UVH6 (ULTRAVIOLET HYPERSENSITIVE 6) ATP BINDING / ATP-DEPENDENT DNA HELICASE/ ATP-DEPENDENT HELICASE/ DNA BINDING / HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING |
AT1G72560 | PredictedAffinity Capture-MS | FSW = 0.0257
| Unknown | PSD (PAUSED) NUCLEOBASE NUCLEOSIDE NUCLEOTIDE AND NUCLEIC ACID TRANSMEMBRANE TRANSPORTER/ TRNA BINDING |
AT2G37470 | PredictedAffinity Capture-MS | FSW = 0.1727
| Unknown | HISTONE H2B PUTATIVE |
AT2G18760 | Predictedinteraction prediction | FSW = 0.0264
| Unknown | CHR8 (CHROMATIN REMODELING 8) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT1G72480 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3003
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN GOLGI APPARATUS EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TRANSMEMBRANE RECEPTOR EUKARYOTA (INTERPROIPR009637) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G010701) HAS 422 BLAST HITS TO 420 PROTEINS IN 121 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 208 FUNGI - 101 PLANTS - 83 VIRUSES - 0 OTHER EUKARYOTES - 30 (SOURCE NCBI BLINK) |
AT3G57240 | PredictedAffinity Capture-MSAffinity Capture-MStwo hybridAffinity Capture-MS | FSW = 0.0918
| Unknown | BG3 (BETA-13-GLUCANASE 3) CELLULASE/ HYDROLASE HYDROLYZING O-GLYCOSYL COMPOUNDS |
AT5G57625 | PredictedAffinity Capture-MS | FSW = 0.4170
| Unknown | ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN |
AT4G33710 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2948
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT4G33720 | PredictedAffinity Capture-MS | FSW = 0.0939
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT3G08730 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3032
| Unknown | PK1 (PROTEIN-SERINE KINASE 1) KINASE/ PROTEIN BINDING / PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT3G16050 | PredictedAffinity Capture-MS | FSW = 0.4473
| Unknown | A37 PROTEIN HETERODIMERIZATION |
AT5G40820 | Predictedinteraction prediction | FSW = 0.0162
| Unknown | ATRAD3 BINDING / INOSITOL OR PHOSPHATIDYLINOSITOL KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR / PROTEIN SERINE/THREONINE KINASE |
AT4G17190 | PredictedAffinity Capture-MS | FSW = 0.0372
| Unknown | FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) DIMETHYLALLYLTRANSTRANSFERASE/ GERANYLTRANSTRANSFERASE |
AT1G09270 | PredictedAffinity Capture-MS | FSW = 0.0160
| Unknown | IMPA-4 (IMPORTIN ALPHA ISOFORM 4) BINDING / PROTEIN TRANSPORTER |
AT1G23480 | PredictedAffinity Capture-MS | FSW = 0.0271
| Unknown | ATCSLA03 (CELLULOSE SYNTHASE-LIKE A3) CELLULOSE SYNTHASE/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS |
AT1G24706 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3722
| Unknown | UNKNOWN PROTEIN |
AT1G33090 | Predictedco-fractionationCo-fractionation | FSW = 0.1237
| Unknown | MATE EFFLUX FAMILY PROTEIN |
AT1G51770 | PredictedAffinity Capture-MS | FSW = 0.2122
| Unknown | UNKNOWN PROTEIN |
AT1G58520 | PredictedAffinity Capture-MS | FSW = 0.4939
| Unknown | HYDROLASE ACTING ON ESTER BONDS / LIPASE |
AT1G64480 | PredictedAffinity Capture-MS | FSW = 0.2522
| Unknown | CBL8 (CALCINEURIN B-LIKE PROTEIN 8) CALCIUM ION BINDING |
AT2G01770 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4677
| Unknown | VIT1 (VACUOLAR IRON TRANSPORTER 1) IRON ION TRANSMEMBRANE TRANSPORTER |
AT2G03040 | PredictedAffinity Capture-MS | FSW = 0.1600
| Unknown | TRANSMEMBRANE PROTEIN-RELATED |
AT2G16740 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2126
| Unknown | UBC29 (UBIQUITIN-CONJUGATING ENZYME 29) UBIQUITIN-PROTEIN LIGASE |
AT2G19910 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.5075
| Unknown | RNA-DEPENDENT RNA POLYMERASE FAMILY PROTEIN |
AT2G34250 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2450
| Unknown | PROTEIN TRANSPORT PROTEIN SEC61 PUTATIVE |
AT2G35390 | PredictedAffinity Capture-MS | FSW = 0.0781
| Unknown | RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 1 / PHOSPHORIBOSYL DIPHOSPHATE SYNTHETASE 1 (PRSI) |
AT2G43360 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.5496
| Unknown | BIO2 (BIOTIN AUXOTROPH 2) BIOTIN SYNTHASE |
AT2G46860 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3783
| Unknown | ATPPA3 (ARABIDOPSIS THALIANA PYROPHOSPHORYLASE 3) INORGANIC DIPHOSPHATASE/ PYROPHOSPHATASE |
AT3G11900 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.5322
| Unknown | ANT1 (AROMATIC AND NEUTRAL TRANSPORTER 1) AMINO ACID TRANSMEMBRANE TRANSPORTER/ AROMATIC AMINO ACID TRANSMEMBRANE TRANSPORTER/ NEUTRAL AMINO ACID TRANSMEMBRANE TRANSPORTER |
AT3G18850 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2794
| Unknown | LPAT5 ACYLTRANSFERASE |
AT3G19940 | PredictedAffinity Capture-MS | FSW = 0.1548
| Unknown | SUGAR TRANSPORTER PUTATIVE |
AT3G20650 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2461
| Unknown | MRNA CAPPING ENZYME FAMILY PROTEIN |
AT3G30842 | PredictedAffinity Capture-MS | FSW = 0.2607
| Unknown | PDR10 (PLEIOTROPIC DRUG RESISTANCE 10) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT3G45590 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.0731
| Unknown | ATSEN1 (SPLICING ENDONUCLEASE 1) NUCLEASE/ NUCLEIC ACID BINDING / TRNA-INTRON ENDONUCLEASE |
AT3G49880 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4329
| Unknown | GLYCOSYL HYDROLASE FAMILY PROTEIN 43 |
AT3G51880 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4618
| Unknown | HMGB1 (HIGH MOBILITY GROUP B 1) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR |
AT3G53730 | PredictedAffinity Capture-MS | FSW = 0.5141
| Unknown | HISTONE H4 |
AT3G59410 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4265
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT4G04740 | PredictedAffinity Capture-MS | FSW = 0.0417
| Unknown | CPK23 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT4G17380 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2938
| Unknown | MSH4 (MUTS HOMOLOG 4) ATP BINDING / DAMAGED DNA BINDING / MISMATCHED DNA BINDING |
AT4G19645 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3703
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN INTEGRAL TO MEMBRANE CONTAINS INTERPRO DOMAIN/S TRAM LAG1 AND CLN8 HOMOLOGY (INTERPROIPR006634) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G313002) HAS 401 BLAST HITS TO 401 PROTEINS IN 98 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 186 FUNGI - 102 PLANTS - 84 VIRUSES - 0 OTHER EUKARYOTES - 29 (SOURCE NCBI BLINK) |
AT1G34580 | PredictedAffinity Capture-MS | FSW = 0.1325
| Unknown | MONOSACCHARIDE TRANSPORTER PUTATIVE |
AT1G78290 | PredictedAffinity Capture-MS | FSW = 0.4042
| Unknown | SERINE/THREONINE PROTEIN KINASE PUTATIVE |
AT2G31900 | PredictedAffinity Capture-MS | FSW = 0.0106
| Unknown | XIF MOTOR |
AT2G37760 | PredictedAffinity Capture-MS | FSW = 0.2613
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
AT2G41530 | PredictedAffinity Capture-MS | FSW = 0.4718
| Unknown | SFGH (S-FORMYLGLUTATHIONE HYDROLASE) S-FORMYLGLUTATHIONE HYDROLASE/ HYDROLASE ACTING ON ESTER BONDS |
AT2G47570 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3563
| Unknown | 60S RIBOSOMAL PROTEIN L18 (RPL18A) |
AT3G12690 | PredictedAffinity Capture-MS | FSW = 0.2142
| Unknown | AGC15 (AGC KINASE 15) KINASE |
AT4G35620 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4510
| Unknown | CYCB22 (CYCLIN B22) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT5G27640 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4355
| Unknown | TIF3B1 (TRANSLATION INITIATION FACTOR 3B1) NUCLEIC ACID BINDING / TRANSLATION INITIATION FACTOR |
AT5G06420 | PredictedAffinity Capture-MS | FSW = 0.1116
| Unknown | ZINC FINGER (CCCH-TYPE/C3HC4-TYPE RING FINGER) FAMILY PROTEIN |
AT5G17000 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3129
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
AT5G19660 | PredictedAffinity Capture-MS | FSW = 0.1267
| Unknown | S1P (SITE-1 PROTEASE) ENDOPEPTIDASE/ SERINE-TYPE ENDOPEPTIDASE |
AT5G19820 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3385
| Unknown | EMB2734 (EMBRYO DEFECTIVE 2734) BINDING / LYASE |
AT5G57890 | PredictedAffinity Capture-MS | FSW = 0.3139
| Unknown | ANTHRANILATE SYNTHASE BETA SUBUNIT PUTATIVE |
AT5G57160 | Predictedinteraction prediction | FSW = 0.0271
| Unknown | ATLIG4 DNA LIGASE (ATP)/ PROTEIN BINDING |
AT1G63160 | Predictedinteraction prediction | FSW = 0.0175
| Unknown | REPLICATION FACTOR C 40 KDA PUTATIVE |
AT5G55300 | Predictedinteraction prediction | FSW = 0.0090
| Unknown | TOP1ALPHA (DNA TOPOISOMERASE I ALPHA) DNA TOPOISOMERASE TYPE I |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454