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AT2G44610 - ( RAB6A GTP binding / protein binding )

99 Proteins interacs with AT2G44610

Locus	Method	FSW	Cellular Compartment Classification (C3)	Description
AT1G79830	Experimental pull down	FSW = 0.0755	Class B: vacuole plasma membrane nucleus	GC5 (GOLGIN CANDIDATE 5) PROTEIN BINDING
AT5G45750	Predicted Phylogenetic profile method	FSW = 0.3328	Class C: vacuole plasma membrane	ATRABA1C (ARABIDOPSIS RAB GTPASE HOMOLOG A1C) GTP BINDING
AT4G19640	Predicted Phylogenetic profile method Co-expression	FSW = 0.2451	Class C: vacuole plasma membrane	ARA7 GTP BINDING
AT1G02130	Predicted interaction prediction Shared biological function Co-expression	FSW = 0.2216	Class C: vacuole plasma membrane	ARA-5 (ARABIDOPSIS RAS 5) GTP BINDING
AT1G49300	Predicted Shared biological function Phylogenetic profile method	FSW = 0.2149	Class C: vacuole plasma membrane	RABG3E (RAB GTPASE HOMOLOG G3E) GTP BINDING
AT3G58730	Predicted interaction prediction	FSW = 0.0309	Class C: vacuole plasma membrane	VACUOLAR ATP SYNTHASE SUBUNIT D (VATD) / V-ATPASE D SUBUNIT / VACUOLAR PROTON PUMP D SUBUNIT (VATPD)
AT4G02620	Predicted interaction prediction	FSW = 0.0741	Class C: vacuole plasma membrane	VACUOLAR ATPASE SUBUNIT F FAMILY PROTEIN
AT5G47520	Predicted Phylogenetic profile method	FSW = 0.2647	Class C: vacuole plasma membrane	ATRABA5A (ARABIDOPSIS RAB GTPASE HOMOLOG A5A) GTP BINDING
AT3G46060	Predicted Shared biological function Phylogenetic profile method	FSW = 0.2940	Class C: vacuole plasma membrane	ATRAB8A GTP BINDING
AT4G17170	Predicted Phylogenetic profile method	FSW = 0.3328	Class C: vacuole plasma membrane	RABB1C (ARABIDOPSIS RAB GTPASE HOMOLOG B1C) GTP BINDING / GTPASE
AT1G19910	Predicted interaction prediction	FSW = 0.0298	Class C: vacuole plasma membrane	AVA-P2 ATPASE/ PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM
AT1G16920	Predicted Phylogenetic profile method	FSW = 0.2855	Class C: vacuole plasma membrane	ATRABA1B (ARABIDOPSIS RAB GTPASE HOMOLOG A1B) GTP BINDING
AT1G31780	Predicted interaction prediction	FSW = 0.1211	Class C: vacuole	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S CONSERVED OLIGOMERIC COMPLEX COG6 (INTERPROIPR010490) HAS 281 BLAST HITS TO 279 PROTEINS IN 131 SPECIES ARCHAE - 0 BACTERIA - 2 METAZOA - 132 FUNGI - 106 PLANTS - 21 VIRUSES - 0 OTHER EUKARYOTES - 20 (SOURCE NCBI BLINK)
AT2G45200	Predicted interaction prediction	FSW = 0.1040	Class C: vacuole	GOS12 (GOLGI SNARE 12) SNARE BINDING
AT5G45130	Predicted Phylogenetic profile method Co-expression	FSW = 0.2347	Class C: vacuole	RHA1 (RAB HOMOLOG 1) GTP BINDING
AT1G22740	Predicted Phylogenetic profile method	FSW = 0.1449	Class C: vacuole	RABG3B GTP BINDING
AT1G79590	Predicted interaction prediction	FSW = 0.0456	Class C: vacuole	SYP52 (SYNTAXIN OF PLANTS 52) SNAP RECEPTOR
AT2G30710	Predicted interaction prediction	FSW = 0.1277	Class C: vacuole	RABGAP/TBC DOMAIN-CONTAINING PROTEIN
AT4G23710	Predicted interaction prediction	FSW = 0.0360	Class C: vacuole	VAG2 HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES
AT2G21880	Predicted Phylogenetic profile method	FSW = 0.2679	Class C: vacuole	ATRAB7A GTP BINDING
AT3G63130	Predicted interaction prediction Enriched domain pair Co-expression	FSW = 0.0085	Class C: plasma membrane	RANGAP1 (RAN GTPASE ACTIVATING PROTEIN 1) RAN GTPASE ACTIVATOR/ PROTEIN BINDING
AT3G16100	Predicted interaction prediction Phylogenetic profile method Co-expression	FSW = 0.2206	Class C: plasma membrane	ATRABG3C (ARABIDOPSIS RAB GTPASE HOMOLOG G3C) GTP BINDING
AT3G18820	Predicted Phylogenetic profile method	FSW = 0.2323	Class C: plasma membrane	ATRAB7B (ARABIDOPSIS RAB GTPASE HOMOLOG G3F) GTP BINDING
AT1G73230	Predicted interaction prediction	FSW = 0.0095	Class C: plasma membrane	NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX (NAC) DOMAIN-CONTAINING PROTEIN
AT3G53610	Predicted Phylogenetic profile method	FSW = 0.3550	Class C: plasma membrane	ATRAB8 GTP BINDING
AT1G08820	Predicted interaction prediction	FSW = 0.0367	Class C: plasma membrane	VAP27-2 (VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-2) STRUCTURAL MOLECULE
AT1G32090	Predicted interaction prediction	FSW = 0.0034	Class C: plasma membrane	EARLY-RESPONSIVE TO DEHYDRATION PROTEIN-RELATED / ERD PROTEIN-RELATED
AT1G28550	Predicted Phylogenetic profile method	FSW = 0.2647	Class C: plasma membrane	ATRABA1I (ARABIDOPSIS RAB GTPASE HOMOLOG A1I) GTP BINDING
AT2G43130	Predicted Shared biological function Phylogenetic profile method	FSW = 0.3946	Class C: plasma membrane	ARA4 GTP BINDING / GTPASE/ PROTEIN BINDING
AT5G59840	Predicted Phylogenetic profile method	FSW = 0.1862	Class C: plasma membrane	RAS-RELATED GTP-BINDING FAMILY PROTEIN
AT3G48040	Predicted Gene fusion method Co-expression	FSW = 0.0075	Class C: plasma membrane	ROP10 (RHO-RELATED PROTEIN FROM PLANTS 10) GTP BINDING / GTPASE
AT1G06400	Predicted Phylogenetic profile method	FSW = 0.2701	Class C: plasma membrane	ARA-2 GTP BINDING
AT4G18430	Predicted Phylogenetic profile method	FSW = 0.3025	Class C: plasma membrane	ATRABA1E (ARABIDOPSIS RAB GTPASE HOMOLOG A1E) GTP BINDING
AT1G07410	Predicted Phylogenetic profile method	FSW = 0.2949	Class C: plasma membrane	ATRABA2B (ARABIDOPSIS RAB GTPASE HOMOLOG A2B) GTP BINDING / GTPASE/ PROTEIN BINDING
AT1G57720	Predicted interaction prediction	FSW = 0.0162	Class C: plasma membrane	ELONGATION FACTOR 1B-GAMMA PUTATIVE / EEF-1B GAMMA PUTATIVE
AT4G18800	Predicted Phylogenetic profile method	FSW = 0.1325	Class C: plasma membrane	ATRABA1D (ARABIDOPSIS RAB GTPASE HOMOLOG A1D) GTP BINDING
AT5G26240	Predicted interaction prediction	FSW = 0.0591	Unknown	CLC-D (CHLORIDE CHANNEL D) ANION CHANNEL/ VOLTAGE-GATED CHLORIDE CHANNEL
AT4G26970	Predicted interaction prediction	FSW = 0.0017	Unknown	ACONITATE HYDRATASE/ COPPER ION BINDING
AT5G16630	Predicted interaction prediction	FSW = 0.0114	Unknown	RAD4 DAMAGED DNA BINDING
AT4G19490	Predicted interaction prediction	FSW = 0.0617	Unknown	PROTEIN BINDING
AT4G35860	Predicted Phylogenetic profile method	FSW = 0.3077	Unknown	ATGB2 (GTP-BINDING 2) GTP BINDING
AT2G15240	Predicted interaction prediction	FSW = 0.0763	Unknown	UNC-50 FAMILY PROTEIN
AT5G67270	Predicted interaction prediction	FSW = 0.0081	Unknown	ATEB1C (MICROTUBULE END BINDING PROTEIN 1) MICROTUBULE BINDING
AT2G38810	Predicted interaction prediction	FSW = 0.0298	Unknown	HTA8 (HISTONE H2A 8) DNA BINDING
AT3G12810	Predicted interaction prediction	FSW = 0.0232	Unknown	PIE1 (PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING
AT2G44950	Predicted interaction prediction	FSW = 0.0325	Unknown	HUB1 (HISTONE MONO-UBIQUITINATION 1) PROTEIN BINDING / PROTEIN HOMODIMERIZATION/ UBIQUITIN-PROTEIN LIGASE/ ZINC ION BINDING
AT2G22290	Predicted Gene neighbors method Phylogenetic profile method Co-expression	FSW = 0.4867	Unknown	ATRABH1D (ARABIDOPSIS RAB GTPASE HOMOLOG H1D) GTP BINDING
AT1G50500	Predicted interaction prediction	FSW = 0.0647	Unknown	HIT1 (HEAT-INTOLERANT 1) TRANSPORTER
AT5G64990	Predicted Phylogenetic profile method Co-expression	FSW = 0.4327	Unknown	ATRABH1A (ARABIDOPSIS RAB GTPASE HOMOLOG H1A) GTP BINDING
AT5G03520	Predicted Phylogenetic profile method	FSW = 0.2981	Unknown	ATRAB8C GTP BINDING
AT1G55130	Predicted interaction prediction	FSW = 0.0503	Unknown	ENDOMEMBRANE PROTEIN 70 PUTATIVE
AT1G71270	Predicted interaction prediction	FSW = 0.0929	Unknown	POK (POKY POLLEN TUBE)
AT3G54840	Predicted interaction prediction Phylogenetic profile method Co-expression	FSW = 0.1324	Unknown	ARA6 GTP BINDING / GTPASE
AT1G27980	Predicted interaction prediction	FSW = 0.0293	Unknown	DPL1 CARBOXY-LYASE/ CATALYTIC/ PYRIDOXAL PHOSPHATE BINDING
AT3G59500	Predicted interaction prediction	FSW = 0.1212	Unknown	INTEGRAL MEMBRANE HRF1 FAMILY PROTEIN
AT3G05710	Predicted interaction prediction	FSW = 0.1473	Unknown	SYP43 (SYNTAXIN OF PLANTS 43) SNAP RECEPTOR
AT3G06540	Predicted in vitro	FSW = 0.0988	Unknown	GDP DISSOCIATION INHIBITOR FAMILY PROTEIN / RAB GTPASE ACTIVATOR FAMILY PROTEIN
AT4G39220	Predicted interaction prediction	FSW = 0.0983	Unknown	ATRER1A
AT5G07110	Predicted two hybrid Affinity Capture-MS	FSW = 0.0647	Unknown	PRA1B6 (PRENYLATED RAB ACCEPTOR 1B6)
AT5G66100	Predicted interaction prediction	FSW = 0.0181	Unknown	LA DOMAIN-CONTAINING PROTEIN
AT5G52210	Predicted interaction prediction	FSW = 0.0705	Unknown	ATGB1 (ARABIDOPSIS THALIANA GTP-BINDING PROTEIN 1) GTP BINDING
AT3G22590	Predicted interaction prediction	FSW = 0.0419	Unknown	RNA POL II ACCESSORY FACTOR CDC73 FAMILY PROTEIN
AT3G18430	Predicted interaction prediction	FSW = 0.0431	Unknown	CALCIUM-BINDING EF HAND FAMILY PROTEIN
AT4G26550	Predicted interaction prediction	FSW = 0.0817	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SFT2-LIKE (INTERPROIPR011691) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT5G560201) HAS 452 BLAST HITS TO 452 PROTEINS IN 136 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 198 FUNGI - 89 PLANTS - 61 VIRUSES - 0 OTHER EUKARYOTES - 104 (SOURCE NCBI BLINK)
AT1G16560	Predicted interaction prediction	FSW = 0.0793	Unknown	PER1-LIKE FAMILY PROTEIN
AT5G24940	Predicted interaction prediction	FSW = 0.0218	Unknown	PROTEIN PHOSPHATASE 2C PUTATIVE / PP2C PUTATIVE
AT1G01910	Predicted interaction prediction	FSW = 0.0587	Unknown	ANION-TRANSPORTING ATPASE PUTATIVE
AT3G55170	Predicted interaction prediction	FSW = 0.0166	Unknown	60S RIBOSOMAL PROTEIN L35 (RPL35C)
AT1G08190	Predicted interaction prediction	FSW = 0.0849	Unknown	VACUOLAR ASSEMBLY PROTEIN PUTATIVE (VPS41)
AT2G11000	Predicted interaction prediction	FSW = 0.0529	Unknown	ATMAK10 ACETYLTRANSFERASE
AT5G46750	Predicted interaction prediction	FSW = 0.0256	Unknown	AGD9 (ARF-GAP DOMAIN 9) ARF GTPASE ACTIVATOR/ DNA BINDING / ZINC ION BINDING
AT3G12180	Predicted interaction prediction	FSW = 0.0969	Unknown	CORNICHON FAMILY PROTEIN
AT1G57600	Predicted interaction prediction	FSW = 0.1016	Unknown	MEMBRANE BOUND O-ACYL TRANSFERASE (MBOAT) FAMILY PROTEIN
AT1G09020	Predicted interaction prediction	FSW = 0.0092	Unknown	SNF4 (HOMOLOG OF YEAST SUCROSE NONFERMENTING 4) PROTEIN KINASE ACTIVATOR
AT1G61040	Predicted interaction prediction	FSW = 0.0258	Unknown	VIP5 (VERNALIZATION INDEPENDENCE 5) DNA BINDING
AT3G47810	Predicted interaction prediction	FSW = 0.0611	Unknown	MAG1 (MAIGO 1) HYDROLASE/ PROTEIN SERINE/THREONINE PHOSPHATASE
AT5G06140	Predicted interaction prediction	FSW = 0.0555	Unknown	SNX1 (SORTING NEXIN 1) PHOSPHOINOSITIDE BINDING / PROTEIN BINDING
AT5G53530	Predicted interaction prediction	FSW = 0.0357	Unknown	VPS26A (VACUOLAR PROTEIN SORTING 26A)
AT3G51310	Predicted interaction prediction	FSW = 0.0364	Unknown	VPS35C (VPS35 HOMOLOG C)
AT5G16850	Predicted interaction prediction	FSW = 0.0237	Unknown	ATTERT (TELOMERASE REVERSE TRANSCRIPTASE) TELOMERASE/ TELOMERIC TEMPLATE RNA REVERSE TRANSCRIPTASE
AT5G63140	Predicted interaction prediction	FSW = 0.0216	Unknown	ATPAP29 (ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 29) ACID PHOSPHATASE/ PROTEIN SERINE/THREONINE PHOSPHATASE
AT5G22840	Predicted interaction prediction	FSW = 0.0054	Unknown	PROTEIN KINASE FAMILY PROTEIN
AT1G26450	Predicted interaction prediction	FSW = 0.1277	Unknown	BETA-13-GLUCANASE-RELATED
AT4G16700	Predicted interaction prediction	FSW = 0.0381	Unknown	PSD1 (PHOSPHATIDYLSERINE DECARBOXYLASE 1) PHOSPHATIDYLSERINE DECARBOXYLASE
AT5G27970	Predicted interaction prediction	FSW = 0.0626	Unknown	BINDING
AT3G61710	Predicted interaction prediction	FSW = 0.0342	Unknown	AUTOPHAGY PROTEIN APG6 FAMILY
AT1G48760	Predicted interaction prediction	FSW = 0.1207	Unknown	DELTA-ADR (DELTA-ADAPTIN) BINDING / CLATHRIN BINDING / PROTEIN BINDING / PROTEIN TRANSPORTER
AT4G39870	Predicted interaction prediction	FSW = 0.0206	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TLDC (INTERPROIPR006571) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G055902) HAS 2018 BLAST HITS TO 1865 PROTEINS IN 220 SPECIES ARCHAE - 0 BACTERIA - 39 METAZOA - 1002 FUNGI - 279 PLANTS - 129 VIRUSES - 34 OTHER EUKARYOTES - 535 (SOURCE NCBI BLINK)
AT2G38130	Predicted interaction prediction	FSW = 0.0595	Unknown	ATMAK3 N-ACETYLTRANSFERASE
AT5G09550	Predicted interaction prediction Enriched domain pair Co-expression	FSW = 0.1224	Unknown	RAB GDP-DISSOCIATION INHIBITOR
AT3G07890	Predicted interaction prediction	FSW = 0.0926	Unknown	RABGAP/TBC DOMAIN-CONTAINING PROTEIN
AT4G39890	Predicted Phylogenetic profile method Co-expression	FSW = 0.2388	Unknown	ATRABH1C (ARABIDOPSIS RAB GTPASE HOMOLOG H1C) GTP BINDING / PROTEIN BINDING
AT3G15060	Predicted Phylogenetic profile method	FSW = 0.2820	Unknown	ATRABA1G (ARABIDOPSIS RAB GTPASE HOMOLOG A1G) GTP BINDING
AT2G33870	Predicted Phylogenetic profile method	FSW = 0.2820	Unknown	ARRABA1H (ARABIDOPSIS RAB GTPASE HOMOLOG A1H) GTP BINDING
AT5G47960	Predicted Phylogenetic profile method	FSW = 0.2820	Unknown	ATRABA4C GTP BINDING
AT5G10260	Predicted Phylogenetic profile method	FSW = 0.4893	Unknown	ATRABH1E (ARABIDOPSIS RAB GTPASE HOMOLOG H1E) GTP BINDING
AT4G17160	Predicted Phylogenetic profile method	FSW = 0.3524	Unknown	ATRABB1A (ARABIDOPSIS RAB GTPASE HOMOLOG B1A) GTP BINDING
AT5G60860	Predicted Phylogenetic profile method	FSW = 0.2820	Unknown	ATRABA1F (ARABIDOPSIS RAB GTPASE HOMOLOG A1F) GTP BINDING
AT2G31680	Predicted Phylogenetic profile method	FSW = 0.3714	Unknown	ATRABA5D (ARABIDOPSIS RAB GTPASE HOMOLOG A5D) GTP BINDING

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from

Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment

Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment

Class C: Same as Class A but the PPI is predicted

Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB

Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

Welcome to AtPIN

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AT2G44610 - ( RAB6A GTP binding / protein binding )

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