Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Welcome to AtPIN
AtPIN will be upgraded. Please send your suggestions here
AT5G16850 - ( ATTERT (TELOMERASE REVERSE TRANSCRIPTASE) telomerase/ telomeric template RNA reverse transcriptase )
21 Proteins interacs with AT5G16850Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G56000 | Predictedin vivo | FSW = 0.0902
| Unknown | HEAT SHOCK PROTEIN 81-4 (HSP81-4) |
AT2G44610 | Predictedinteraction prediction | FSW = 0.0237
| Unknown | RAB6A GTP BINDING / PROTEIN BINDING |
AT5G52640 | Predictedin vivoColocalization | FSW = 0.0173
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT4G02450 | Predictedin vivoin vitro | FSW = 0.0703
| Unknown | GLYCINE-RICH PROTEIN |
AT1G16970 | PredictedSynthetic Lethalityinterologs mappinginterologs mappingin vivoin vitroPhenotypic Enhancement | FSW = 0.1394
| Unknown | KU70 (ARABIDOPSIS THALIANA KU70 HOMOLOG) DOUBLE-STRANDED DNA BINDING / PROTEIN BINDING |
AT1G48130 | PredictedAffinity Capture-Western | FSW = 0.0900
| Unknown | ATPER1 ANTIOXIDANT/ THIOREDOXIN PEROXIDASE |
AT1G48050 | Predictedin vivoin vitro | FSW = 0.1481
| Unknown | KU80 DOUBLE-STRANDED DNA BINDING / PROTEIN BINDING |
AT3G18610 | PredictedAffinity Capture-WesternReconstituted Complex | FSW = 0.0513
| Unknown | ATRANGAP1 (RAN GTPASE-ACTIVATING PROTEIN 1) NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT3G54350 | PredictedAffinity Capture-WesternReconstituted Complex | FSW = 0.0215
| Unknown | EMB1967 (EMBRYO DEFECTIVE 1967) |
AT5G17020 | Predictedin vivoin vitrotwo hybrid | FSW = 0.0202
| Unknown | XPO1A PROTEIN BINDING / PROTEIN TRANSPORTER/ RECEPTOR |
AT2G22290 | PredictedSynthetic Lethality | FSW = 0.0304
| Unknown | ATRABH1D (ARABIDOPSIS RAB GTPASE HOMOLOG H1D) GTP BINDING |
AT2G31970 | PredictedSynthetic Rescue | FSW = 0.0565
| Unknown | RAD50 ATP BINDING / NUCLEASE/ ZINC ION BINDING |
AT5G66130 | PredictedPhenotypic Enhancement | FSW = 0.0711
| Unknown | ATRAD17 (ARABIDOPSIS THALIANA RADIATION SENSITIVE) |
AT5G19400 | PredictedReconstituted Complex | FSW = 0.0381
| Unknown | SMG7 |
AT1G10930 | PredictedSynthetic LethalityPhenotypic EnhancementPhenotypic Enhancement | FSW = 0.0588
| Unknown | RECQ4A ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING |
AT1G18090 | PredictedSynthetic Rescue | FSW = 0.1224
| Unknown | EXONUCLEASE PUTATIVE |
AT2G39260 | PredictedSynthetic Rescue | FSW = 0.0202
| Unknown | RNA BINDING / BINDING / PROTEIN BINDING |
AT5G09620 | PredictedPhenotypic Enhancement | FSW = 0.0476
| Unknown | OCTICOSAPEPTIDE/PHOX/BEM1P (PB1) DOMAIN-CONTAINING PROTEIN |
AT5G10260 | PredictedSynthetic Lethality | FSW = 0.0243
| Unknown | ATRABH1E (ARABIDOPSIS RAB GTPASE HOMOLOG H1E) GTP BINDING |
AT1G34150 | PredictedSynthetic Lethality | FSW = 0.0277
| Unknown | TRNA PSEUDOURIDINE SYNTHASE FAMILY PROTEIN |
AT1G29630 | PredictedSynthetic Rescue | FSW = 0.0686
| Unknown | NUCLEASE |
Downloads
Quick help
Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454