Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G18090 - ( exonuclease putative )
35 Proteins interacs with AT1G18090Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G12360 | Predictedtwo hybrid | FSW = 0.0185
| Unknown | KEU (KEULE) PROTEIN TRANSPORTER |
AT5G43530 | PredictedSynthetic Lethality | FSW = 0.1129
| Unknown | SNF2 DOMAIN-CONTAINING PROTEIN / HELICASE DOMAIN-CONTAINING PROTEIN / RING FINGER DOMAIN-CONTAINING PROTEIN |
AT5G52640 | PredictedAffinity Capture-MS | FSW = 0.0215
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT3G18524 | PredictedAffinity Capture-WesternAffinity Capture-Westerntwo hybridtwo hybridtwo hybridtwo hybridtwo hybridin vitroin vivoin vivoin vitrotwo hybridAffinity Capture-MSinterologs mappingAffinity Capture-WesternPhenotypic Enhancement | FSW = 0.2566
| Unknown | MSH2 (MUTS HOMOLOG 2) ATP BINDING / DAMAGED DNA BINDING / MISMATCHED DNA BINDING / PROTEIN BINDING |
AT1G16970 | PredictedSynthetic RescueSynthetic Rescue | FSW = 0.1337
| Unknown | KU70 (ARABIDOPSIS THALIANA KU70 HOMOLOG) DOUBLE-STRANDED DNA BINDING / PROTEIN BINDING |
AT5G35910 | PredictedPhenotypic Enhancement | FSW = 0.0182
| Unknown | 3-5 EXONUCLEASE DOMAIN-CONTAINING PROTEIN / HELICASE AND RNASE D C-TERMINAL DOMAIN-CONTAINING PROTEIN / HRDC DOMAIN-CONTAINING PROTEIN |
AT2G29570 | PredictedAffinity Capture-MS | FSW = 0.1060
| Unknown | PCNA2 (PROLIFERATING CELL NUCLEAR ANTIGEN 2) DNA BINDING / DNA POLYMERASE PROCESSIVITY FACTOR |
AT1G07370 | PredictedPhenotypic Enhancementinterologs mapping | FSW = 0.2240
| Unknown | PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN) DNA BINDING / DNA POLYMERASE PROCESSIVITY FACTOR/ PROTEIN BINDING |
AT5G41150 | PredictedPhenotypic Enhancement | FSW = 0.2526
| Unknown | UVH1 (ULTRAVIOLET HYPERSENSITIVE 1) SINGLE-STRANDED DNA SPECIFIC ENDODEOXYRIBONUCLEASE |
AT2G31970 | Predictedinterologs mappinginterologs mappinginterologs mappingPhenotypic Enhancement | FSW = 0.1491
| Unknown | RAD50 ATP BINDING / NUCLEASE/ ZINC ION BINDING |
AT5G40820 | PredictedPhenotypic Enhancement | FSW = 0.1959
| Unknown | ATRAD3 BINDING / INOSITOL OR PHOSPHATIDYLINOSITOL KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR / PROTEIN SERINE/THREONINE KINASE |
AT5G63960 | PredictedSynthetic LethalitySynthetic LethalityPhenotypic Enhancement | FSW = 0.1918
| Unknown | EMB2780 (EMBRYO DEFECTIVE 2780) DNA BINDING / DNA-DIRECTED DNA POLYMERASE/ NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT5G54260 | PredictedPhenotypic EnhancementPhenotypic EnhancementPhenotypic EnhancementPhenotypic EnhancementPhenotypic Enhancementinterologs mappinginterologs mappingPhenotypic Enhancementinterologs mappinginterologs mappingPhenotypic Enhancement | FSW = 0.1832
| Unknown | MRE11 (MEIOTIC RECOMBINATION 11) ENDONUCLEASE/ EXONUCLEASE/ HYDROLASE/ MANGANESE ION BINDING / PROTEIN SERINE/THREONINE PHOSPHATASE |
AT2G21790 | PredictedPhenotypic Enhancement | FSW = 0.0697
| Unknown | RNR1 (RIBONUCLEOTIDE REDUCTASE 1) ATP BINDING / PROTEIN BINDING / RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE |
AT1G15200 | Predictedtwo hybrid | FSW = 0.0211
| Unknown | PROTEIN-PROTEIN INTERACTION REGULATOR FAMILY PROTEIN |
AT1G36240 | Predictedtwo hybrid | FSW = 0.0105
| Unknown | 60S RIBOSOMAL PROTEIN L30 (RPL30A) |
AT4G09140 | Predictedin vivoAffinity Capture-MS | FSW = 0.2508
| Unknown | MLH1 (MUTL-HOMOLOGUE 1) PROTEIN BINDING BRIDGING |
AT4G25540 | Predictedin vivoin vitroPhenotypic Enhancement | FSW = 0.2415
| Unknown | MSH3 (ARABIDOPSIS HOMOLOG OF DNA MISMATCH REPAIR PROTEIN MSH3) DAMAGED DNA BINDING / MISMATCHED DNA BINDING / PROTEIN BINDING |
AT1G10930 | Predictedsynthetic growth defectPhenotypic Enhancementsynthetic growth defectPhenotypic Enhancementsynthetic growth defect | FSW = 0.1905
| Unknown | RECQ4A ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING |
AT1G08260 | PredictedPhenotypic EnhancementPhenotypic Enhancement | FSW = 0.0847
| Unknown | TIL1 (TILTED 1) DNA BINDING / DNA-DIRECTED DNA POLYMERASE/ NUCLEIC ACID BINDING / NUCLEOTIDE BINDING / ZINC ION BINDING |
AT1G08840 | Predictedinterologs mappingSynthetic Lethalityinterologs mapping | FSW = 0.1532
| Unknown | EMB2411 (EMBRYO DEFECTIVE 2411) ATP BINDING / ATP-DEPENDENT DNA HELICASE/ DNA BINDING |
AT1G67500 | PredictedPhenotypic EnhancementSynthetic Rescuesynthetic growth defect | FSW = 0.1661
| Unknown | ATREV3 (ARABIDOPSIS THALIANA RECOVERY PROTEIN 3) DNA BINDING / DNA-DIRECTED DNA POLYMERASE |
AT2G45700 | PredictedPhenotypic Enhancement | FSW = 0.2279
| Unknown | STERILE ALPHA MOTIF (SAM) DOMAIN-CONTAINING PROTEIN |
AT3G21300 | PredictedPhenotypic EnhancementPhenotypic Enhancement | FSW = 0.0515
| Unknown | RNA METHYLTRANSFERASE FAMILY PROTEIN |
AT4G02460 | PredictedPhenotypic EnhancementPhenotypic Enhancement | FSW = 0.2999
| Unknown | PMS1 (POSTMEIOTIC SEGREGATION 1) ATP BINDING / MISMATCHED DNA BINDING |
AT5G16850 | PredictedSynthetic Rescue | FSW = 0.1224
| Unknown | ATTERT (TELOMERASE REVERSE TRANSCRIPTASE) TELOMERASE/ TELOMERIC TEMPLATE RNA REVERSE TRANSCRIPTASE |
AT5G26680 | PredictedSynthetic LethalitySynthetic LethalitySynthetic Lethalityinterologs mappingsynthetic growth defectPhenotypic Enhancement | FSW = 0.1544
| Unknown | ENDONUCLEASE PUTATIVE |
AT5G43500 | PredictedPhenotypic Enhancement | FSW = 0.0935
| Unknown | ATARP9 (ACTIN-RELATED PROTEIN 9) DNA BINDING / PROTEIN BINDING |
AT5G55310 | PredictedSynthetic Lethality | FSW = 0.1320
| Unknown | TOP1BETA (DNA TOPOISOMERASE 1 BETA) DNA TOPOISOMERASE TYPE I |
AT1G52740 | PredictedPhenotypic Enhancement | FSW = 0.0380
| Unknown | HTA9 (HISTONE H2A PROTEIN 9) DNA BINDING |
AT1G59890 | PredictedPhenotypic Enhancement | FSW = 0.0280
| Unknown | SNL5 (SIN3-LIKE 5) |
AT3G11910 | PredictedPhenotypic Enhancement | FSW = 0.0094
| Unknown | UBP13 (UBIQUITIN-SPECIFIC PROTEASE 13) UBIQUITIN THIOLESTERASE/ UBIQUITIN-SPECIFIC PROTEASE |
AT4G17380 | PredictedPhenotypic Enhancement | FSW = 0.0286
| Unknown | MSH4 (MUTS HOMOLOG 4) ATP BINDING / DAMAGED DNA BINDING / MISMATCHED DNA BINDING |
AT5G57160 | PredictedPhenotypic Enhancement | FSW = 0.0879
| Unknown | ATLIG4 DNA LIGASE (ATP)/ PROTEIN BINDING |
AT5G63920 | PredictedPhenotypic Enhancement | FSW = 0.1584
| Unknown | DNA TOPOISOMERASE III ALPHA PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454