Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G18524 - ( MSH2 (MUTS HOMOLOG 2) ATP binding / damaged DNA binding / mismatched DNA binding / protein binding )
67 Proteins interacs with AT3G18524Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT4G02070 | Experimentalco-fractionationCo-fractionationco-fractionationCo-fractionation | FSW = 0.4200
| Class B:plasma membranenucleusClass D:nucleus (p = 0.78) | MSH6 (MUTS HOMOLOG 6) DAMAGED DNA BINDING |
AT4G25540 | Experimentalco-fractionationCo-fractionationco-fractionationCo-fractionation | FSW = 0.2645
| Unknown | MSH3 (ARABIDOPSIS HOMOLOG OF DNA MISMATCH REPAIR PROTEIN MSH3) DAMAGED DNA BINDING / MISMATCHED DNA BINDING / PROTEIN BINDING |
AT3G24495 | Experimentalco-fractionationCo-fractionation | FSW = 0.0095
| Unknown | MSH7 (MUTS HOMOLOG 7) ATP BINDING / DAMAGED DNA BINDING / MISMATCHED DNA BINDING |
AT1G54270 | Predictedinteraction prediction | FSW = 0.0143
| Class C:plasma membrane | EIF4A-2 ATP-DEPENDENT HELICASE/ TRANSLATION INITIATION FACTOR |
AT5G56030 | PredictedAffinity Capture-MS | FSW = 0.0473
| Class C:plasma membrane | HSP81-2 (HEAT SHOCK PROTEIN 81-2) ATP BINDING |
AT5G52640 | Predictedsynthetic growth defectAffinity Capture-MS | FSW = 0.0206
| Class C:plasma membrane | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT4G26110 | PredictedPhenotypic Enhancement | FSW = 0.0259
| Class C:plasma membrane | NAP11 (NUCLEOSOME ASSEMBLY PROTEIN11) DNA BINDING |
AT2G06510 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.1275
| Unknown | RPA1A (REPLICATION PROTEIN A 1A) DNA BINDING / NUCLEIC ACID BINDING |
AT2G39800 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0317
| Unknown | P5CS1 (DELTA1-PYRROLINE-5-CARBOXYLATE SYNTHASE 1) DELTA1-PYRROLINE-5-CARBOXYLATE SYNTHETASE |
AT3G48190 | PredictedCo-purification | FSW = 0.1857
| Unknown | ATM (ATAXIA-TELANGIECTASIA MUTATED) 1-PHOSPHATIDYLINOSITOL-3-PHOSPHATE 5-KINASE |
AT4G35800 | PredictedPhenotypic Enhancement | FSW = 0.0172
| Unknown | NRPB1 (RNA POLYMERASE II LARGE SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT2G45300 | PredictedPhenotypic Suppression | FSW = 0.0360
| Unknown | 3-PHOSPHOSHIKIMATE 1-CARBOXYVINYLTRANSFERASE / 5-ENOLPYRUVYLSHIKIMATE-3-PHOSPHATE / EPSP SYNTHASE |
AT3G54670 | Predictedin vitroCo-expression | FSW = 0.0249
| Unknown | TTN8 (TITAN8) ATP BINDING / TRANSPORTER |
AT3G11630 | PredictedPhenotypic Enhancement | FSW = 0.0498
| Unknown | 2-CYS PEROXIREDOXIN CHLOROPLAST (BAS1) |
AT5G41370 | PredictedAffinity Capture-Westerntwo hybridinteraction prediction | FSW = 0.0414
| Unknown | XPB1 (ARABIDOPSIS HOMOLOG OF XERODERMA PIGMENTOSUM COMPLEMENTATION GROUP B 1) ATP BINDING / ATP-DEPENDENT DNA HELICASE/ ATP-DEPENDENT HELICASE/ DNA BINDING / HELICASE/ HYDROLASE/ NUCLEIC ACID BINDING |
AT2G47620 | PredictedAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.0397
| Unknown | ATSWI3A (SWITCH/SUCROSE NONFERMENTING 3A) DNA BINDING |
AT3G13920 | PredictedAffinity Capture-MS | FSW = 0.0378
| Unknown | EIF4A1 (EUKARYOTIC TRANSLATION INITIATION FACTOR 4A1) ATP-DEPENDENT HELICASE/ TRANSLATION INITIATION FACTOR |
AT1G75230 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0622
| Unknown | HHH-GPD BASE EXCISION DNA REPAIR FAMILY PROTEIN |
AT1G03190 | Predictedtwo hybridPhenotypic Enhancementinteraction predictionCo-expression | FSW = 0.0475
| Unknown | UVH6 (ULTRAVIOLET HYPERSENSITIVE 6) ATP BINDING / ATP-DEPENDENT DNA HELICASE/ ATP-DEPENDENT HELICASE/ DNA BINDING / HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING |
AT2G29570 | Predictedin vitroin vitroAffinity Capture-MSCo-expression | FSW = 0.1385
| Unknown | PCNA2 (PROLIFERATING CELL NUCLEAR ANTIGEN 2) DNA BINDING / DNA POLYMERASE PROCESSIVITY FACTOR |
AT1G07370 | Predictedtwo hybridSynthetic RescueReconstituted ComplexPhenotypic Enhancementco-fractionationCo-fractionationAffinity Capture-WesternReconstituted Complextwo hybridPhenotypic EnhancementReconstituted ComplexPhenotypic Enhancementtwo hybridAffinity Capture-Westernco-fractionationCo-fractionationSynthetic RescueCo-expression | FSW = 0.1993
| Unknown | PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN) DNA BINDING / DNA POLYMERASE PROCESSIVITY FACTOR/ PROTEIN BINDING |
AT1G65470 | PredictedPhenotypic Enhancement | FSW = 0.1485
| Unknown | FAS1 (FASCIATA 1) HISTONE BINDING |
AT2G18760 | PredictedPhenotypic Enhancement | FSW = 0.1451
| Unknown | CHR8 (CHROMATIN REMODELING 8) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT1G02680 | PredictedPhenotypic Suppression | FSW = 0.0259
| Unknown | TAF13 (TBP-ASSOCIATED FACTOR 13) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR |
AT1G19120 | PredictedPhenotypic Suppression | FSW = 0.0829
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
AT2G06210 | PredictedPhenotypic Suppression | FSW = 0.0263
| Unknown | ELF8 (EARLY FLOWERING 8) BINDING |
AT5G41360 | PredictedAffinity Capture-Westerntwo hybrid | FSW = 0.0695
| Unknown | XPB2 ATP BINDING / ATP-DEPENDENT DNA HELICASE/ ATP-DEPENDENT HELICASE/ DNA BINDING / HELICASE/ HYDROLASE/ NUCLEIC ACID BINDING |
AT4G21100 | PredictedPhenotypic Enhancement | FSW = 0.0099
| Unknown | DDB1B (DAMAGED DNA BINDING PROTEIN 1 B) DAMAGED DNA BINDING / PROTEIN BINDING |
AT2G31970 | PredictedCo-purification | FSW = 0.2016
| Unknown | RAD50 ATP BINDING / NUCLEASE/ ZINC ION BINDING |
AT2G42120 | PredictedPhenotypic Enhancement | FSW = 0.0546
| Unknown | POLD2 (DNA POLYMERASE DELTA SMALL SUBUNIT) DNA BINDING / DNA-DIRECTED DNA POLYMERASE |
AT5G41150 | Predictedtwo hybridPhenotypic EnhancementPhenotypic EnhancementPhenotypic Enhancementinteraction prediction | FSW = 0.2635
| Unknown | UVH1 (ULTRAVIOLET HYPERSENSITIVE 1) SINGLE-STRANDED DNA SPECIFIC ENDODEOXYRIBONUCLEASE |
AT5G63960 | PredictedSynthetic LethalitySynthetic LethalityPhenotypic EnhancementPhenotypic EnhancementPhenotypic EnhancementCo-expression | FSW = 0.1874
| Unknown | EMB2780 (EMBRYO DEFECTIVE 2780) DNA BINDING / DNA-DIRECTED DNA POLYMERASE/ NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT5G54260 | PredictedCo-purification | FSW = 0.2442
| Unknown | MRE11 (MEIOTIC RECOMBINATION 11) ENDONUCLEASE/ EXONUCLEASE/ HYDROLASE/ MANGANESE ION BINDING / PROTEIN SERINE/THREONINE PHOSPHATASE |
AT3G05210 | Predictedtwo hybridSynthetic RescuePhenotypic EnhancementPhenotypic EnhancementAffinity Capture-Westerninteraction prediction | FSW = 0.1166
| Unknown | ERCC1 5-FLAP ENDONUCLEASE |
AT3G28030 | Predictedtwo hybridSynthetic RescueAffinity Capture-WesternPhenotypic Suppression | FSW = 0.2307
| Unknown | UVH3 (ULTRAVIOLET HYPERSENSITIVE 3) DNA BINDING / CATALYTIC/ ENDONUCLEASE/ NUCLEASE/ SINGLE-STRANDED DNA BINDING |
AT5G40820 | PredictedAffinity Capture-WesternAffinity Capture-MSReconstituted Complexin vitroin vivo | FSW = 0.1570
| Unknown | ATRAD3 BINDING / INOSITOL OR PHOSPHATIDYLINOSITOL KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR / PROTEIN SERINE/THREONINE KINASE |
AT5G20850 | PredictedPhenotypic Suppression | FSW = 0.1535
| Unknown | ATRAD51 ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING / SEQUENCE-SPECIFIC DNA BINDING |
AT1G04020 | Predictedin vitroReconstituted Complex | FSW = 0.2151
| Unknown | BARD1 (BREAST CANCER ASSOCIATED RING 1) DNA BINDING / TRANSCRIPTION COACTIVATOR |
AT1G10930 | Predictedsynthetic growth defectPhenotypic EnhancementCo-purificationPhenotypic Suppression | FSW = 0.1775
| Unknown | RECQ4A ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING |
AT1G18090 | PredictedAffinity Capture-WesternAffinity Capture-Westerntwo hybridtwo hybridtwo hybridtwo hybridtwo hybridin vitroin vivoin vivoin vitrotwo hybridAffinity Capture-MSinterologs mappingAffinity Capture-WesternPhenotypic Enhancement | FSW = 0.2566
| Unknown | EXONUCLEASE PUTATIVE |
AT1G29630 | Predictedinteraction predictiontwo hybridtwo hybridtwo hybridtwo hybridPhenotypic Enhancementin vivoin vivoin vitroin vitroAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSPhenotypic EnhancementAffinity Capture-Westerninterologs mappinginterologs mapping | FSW = 0.1694
| Unknown | NUCLEASE |
AT2G46810 | Predictedin vitroin vivotwo hybridAffinity Capture-MS | FSW = 0.0381
| Unknown | BASIC HELIX-LOOP-HELIX (BHLH) FAMILY PROTEIN |
AT3G05740 | PredictedCo-purification | FSW = 0.2086
| Unknown | RECQI1 (ARABIDOPSIS RECQ HELICASE L1) ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING |
AT3G02680 | PredictedCo-purification | FSW = 0.2230
| Unknown | NBS1 (NIJMEGEN BREAKAGE SYNDROME 1) |
AT4G09140 | PredictedReconstituted ComplexCo-purificationCo-purificationinterologs mappingReconstituted Complexinteraction predictionCo-expression | FSW = 0.3146
| Unknown | MLH1 (MUTL-HOMOLOGUE 1) PROTEIN BINDING BRIDGING |
AT5G22010 | PredictedPhenotypic EnhancementCo-purification | FSW = 0.2519
| Unknown | ATRFC1 (REPLICATION FACTOR C 1) ATP BINDING / DNA BINDING / DNA CLAMP LOADER/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT1G07705 | PredictedPhenotypic Enhancement | FSW = 0.0254
| Unknown | TRANSCRIPTION REGULATOR |
AT1G08260 | PredictedPhenotypic EnhancementPhenotypic EnhancementCo-expression | FSW = 0.1062
| Unknown | TIL1 (TILTED 1) DNA BINDING / DNA-DIRECTED DNA POLYMERASE/ NUCLEIC ACID BINDING / NUCLEOTIDE BINDING / ZINC ION BINDING |
AT1G21710 | PredictedPhenotypic EnhancementCo-expression | FSW = 0.0871
| Unknown | OGG1 (8-OXOGUANINE-DNA GLYCOSYLASE 1) OXIDIZED PURINE BASE LESION DNA N-GLYCOSYLASE |
AT1G30580 | PredictedAffinity Capture-MS | FSW = 0.0056
| Unknown | GTP BINDING |
AT2G31450 | PredictedPhenotypic Enhancement | FSW = 0.0721
| Unknown | ENDONUCLEASE-RELATED |
AT3G18520 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.0159
| Unknown | HDA15 HISTONE DEACETYLASE |
AT1G60620 | PredictedPhenotypic Enhancement | FSW = 0.0199
| Unknown | ATRPAC43 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION |
AT1G66740 | PredictedPhenotypic Suppression | FSW = 0.1011
| Unknown | SGA2 |
AT2G45700 | PredictedPhenotypic EnhancementPhenotypic Enhancement | FSW = 0.1604
| Unknown | STERILE ALPHA MOTIF (SAM) DOMAIN-CONTAINING PROTEIN |
AT4G02460 | Predictedinteraction predictionReconstituted ComplexPhenotypic EnhancementPhenotypic EnhancementPhenotypic EnhancementPhenotypic EnhancementPhenotypic Enhancementtwo hybridinterologs mappingCo-expression | FSW = 0.2897
| Unknown | PMS1 (POSTMEIOTIC SEGREGATION 1) ATP BINDING / MISMATCHED DNA BINDING |
AT5G27740 | PredictedPhenotypic Suppression | FSW = 0.0733
| Unknown | EMB2775 (EMBRYO DEFECTIVE 2775) DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT5G41010 | PredictedAffinity Capture-MS | FSW = 0.0234
| Unknown | NRPB12 DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT5G67100 | PredictedPhenotypic EnhancementCo-expression | FSW = 0.0733
| Unknown | ICU2 (INCURVATA2) DNA-DIRECTED DNA POLYMERASE |
AT4G22140 | PredictedPhenotypic Suppression | FSW = 0.0411
| Unknown | DNA BINDING / PROTEIN BINDING / ZINC ION BINDING |
AT5G10260 | PredictedPhenotypic Suppression | FSW = 0.0491
| Unknown | ATRABH1E (ARABIDOPSIS RAB GTPASE HOMOLOG H1E) GTP BINDING |
AT5G26680 | PredictedPhenotypic EnhancementPhenotypic Suppression | FSW = 0.2178
| Unknown | ENDONUCLEASE PUTATIVE |
AT5G41880 | PredictedPhenotypic Enhancement | FSW = 0.0596
| Unknown | POLA3 DNA PRIMASE |
AT5G45600 | PredictedPhenotypic Suppression | FSW = 0.0334
| Unknown | GAS41 PROTEIN BINDING |
AT1G19480 | PredictedAffinity Capture-MS | FSW = 0.0778
| Unknown | HHH-GPD BASE EXCISION DNA REPAIR FAMILY PROTEIN |
AT4G21070 | Predictedin vitro | FSW = 0.0495
| Unknown | ATBRCA1 UBIQUITIN-PROTEIN LIGASE |
AT3G26680 | PredictedPhenotypic Enhancement | FSW = 0.1617
| Unknown | SNM1 (SENSITIVE TO NITROGEN MUSTARD 1) |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454