Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G75230 - ( HhH-GPD base excision DNA repair family protein )
34 Proteins interacs with AT1G75230Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G30620 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0269
| Class C:nucleus | HISTONE H12 |
AT3G63490 | Predictedpull down | FSW = 0.0622
| Class C:nucleus | RIBOSOMAL PROTEIN L1 FAMILY PROTEIN |
AT5G43530 | PredictedPhenotypic Enhancement | FSW = 0.0969
| Class C:nucleus | SNF2 DOMAIN-CONTAINING PROTEIN / HELICASE DOMAIN-CONTAINING PROTEIN / RING FINGER DOMAIN-CONTAINING PROTEIN |
AT2G18760 | PredictedPhenotypic Enhancement | FSW = 0.0228
| Class C:nucleus | CHR8 (CHROMATIN REMODELING 8) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT1G63810 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0102
| Class C:nucleus | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NRAP PROTEIN (INTERPROIPR005554) HAS 268 BLAST HITS TO 263 PROTEINS IN 124 SPECIES ARCHAE - 3 BACTERIA - 0 METAZOA - 116 FUNGI - 89 PLANTS - 17 VIRUSES - 0 OTHER EUKARYOTES - 43 (SOURCE NCBI BLINK) |
AT1G01040 | PredictedPhenotypic EnhancementAffinity Capture-MSPhenotypic Enhancement | FSW = 0.1003
| Class C:nucleus | DCL1 (DICER-LIKE 1) ATP-DEPENDENT HELICASE/ DOUBLE-STRANDED RNA BINDING / PROTEIN BINDING / RIBONUCLEASE III |
AT4G01310 | Predictedpull down | FSW = 0.1061
| Unknown | RIBOSOMAL PROTEIN L5 FAMILY PROTEIN |
AT1G05190 | Predictedpull down | FSW = 0.0817
| Unknown | EMB2394 (EMBRYO DEFECTIVE 2394) STRUCTURAL CONSTITUENT OF RIBOSOME |
ATCG00380 | Predictedpull down | FSW = 0.0614
| Unknown | CHLOROPLAST ENCODED RIBOSOMAL PROTEIN S4 |
ATCG00800 | Predictedpull down | FSW = 0.0540
| Unknown | ENCODES A CHLOROPLAST RIBOSOMAL PROTEIN S3 A CONSTITUENT OF THE SMALL SUBUNIT OF THE RIBOSOMAL COMPLEX |
AT5G12480 | Predictedbiochemical | FSW = 0.0044
| Unknown | CPK7 (CALMODULIN-DOMAIN PROTEIN KINASE 7) ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT1G76810 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0080
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 2 FAMILY PROTEIN / EIF-2 FAMILY PROTEIN |
AT3G18524 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0622
| Unknown | MSH2 (MUTS HOMOLOG 2) ATP BINDING / DAMAGED DNA BINDING / MISMATCHED DNA BINDING / PROTEIN BINDING |
AT5G41150 | PredictedPhenotypic Enhancement | FSW = 0.1196
| Unknown | UVH1 (ULTRAVIOLET HYPERSENSITIVE 1) SINGLE-STRANDED DNA SPECIFIC ENDODEOXYRIBONUCLEASE |
AT2G31970 | PredictedPhenotypic Enhancement | FSW = 0.0581
| Unknown | RAD50 ATP BINDING / NUCLEASE/ ZINC ION BINDING |
AT2G41460 | Predictedpull down | FSW = 0.0713
| Unknown | ARP DNA-(APURINIC OR APYRIMIDINIC SITE) LYASE |
AT2G20060 | Predictedpull down | FSW = 0.0692
| Unknown | RIBOSOMAL PROTEIN L4 FAMILY PROTEIN |
AT3G27440 | Predictedpull down | FSW = 0.0065
| Unknown | URACIL PHOSPHORIBOSYLTRANSFERASE PUTATIVE / UMP PYROPHOSPHORYLASE PUTATIVE / UPRTASE PUTATIVE |
AT3G49080 | Predictedpull down | FSW = 0.0403
| Unknown | RIBOSOMAL PROTEIN S9 FAMILY PROTEIN |
AT5G64650 | Predictedpull down | FSW = 0.0718
| Unknown | RIBOSOMAL PROTEIN L17 FAMILY PROTEIN |
AT1G04020 | PredictedPhenotypic Enhancement | FSW = 0.0692
| Unknown | BARD1 (BREAST CANCER ASSOCIATED RING 1) DNA BINDING / TRANSCRIPTION COACTIVATOR |
AT1G16350 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0175
| Unknown | INOSINE-5-MONOPHOSPHATE DEHYDROGENASE PUTATIVE |
AT1G23260 | PredictedPhenotypic Enhancement | FSW = 0.1037
| Unknown | MMZ1 (MMS ZWEI HOMOLOGUE 1) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT1G49980 | PredictedPhenotypic Enhancement | FSW = 0.1333
| Unknown | DNA-DIRECTED DNA POLYMERASE/ DAMAGED DNA BINDING |
AT1G67500 | PredictedPhenotypic EnhancementPhenotypic Enhancement | FSW = 0.1697
| Unknown | ATREV3 (ARABIDOPSIS THALIANA RECOVERY PROTEIN 3) DNA BINDING / DNA-DIRECTED DNA POLYMERASE |
AT2G02760 | PredictedPhenotypic Enhancement | FSW = 0.0460
| Unknown | ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2) UBIQUITIN-PROTEIN LIGASE |
AT3G54380 | PredictedPhenotypic Suppression | FSW = 0.0045
| Unknown | SAC3/GANP FAMILY PROTEIN |
AT3G60240 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0088
| Unknown | EIF4G (EUKARYOTIC TRANSLATION INITIATION FACTOR 4G) TRANSLATION INITIATION FACTOR |
AT5G10400 | PredictedAffinity Capture-MS | FSW = 0.0111
| Unknown | HISTONE H3 |
AT5G45140 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0432
| Unknown | NRPC2 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ RIBONUCLEOSIDE BINDING |
AT5G46840 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0163
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
ATMG00520 | PredictedAffinity Capture-MS | FSW = 0.0234
| Unknown | HYPOTHETICAL PROTEIN |
AT3G53650 | Predictedinteraction prediction | FSW = 0.0220
| Unknown | HISTONE H2B PUTATIVE |
AT1G19480 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.3953
| Unknown | HHH-GPD BASE EXCISION DNA REPAIR FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454