Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G63490 - ( ribosomal protein L1 family protein )
67 Proteins interacs with AT3G63490| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT2G36990
   | Predictedpull down | FSW = 0.1571
| Class C:plastidnucleus | SIGF (RNA POLYMERASE SIGMA-SUBUNIT F) DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ SIGMA FACTOR/ TRANSCRIPTION FACTOR |
| AT2G33800
| Predictedpull down | FSW = 0.3758
| Class C:plastidnucleus | RIBOSOMAL PROTEIN S5 FAMILY PROTEIN |
| ATCG00120 | Predictedcomigration in non denaturing gel electrophoresis | FSW = 0.0148
| Class C:plastidnucleus | ENCODES THE ATPASE ALPHA SUBUNIT WHICH IS A SUBUNIT OF ATP SYNTHASE AND PART OF THE CF1 PORTION WHICH CATALYZES THE CONVERSION OF ADP TO ATP USING THE PROTON MOTIVE FORCE THIS COMPLEX IS LOCATED IN THE THYLAKOID MEMBRANE OF THE CHLOROPLAST |
| AT1G23310
| PredictedAffinity Capture-MS | FSW = 0.0076
| Class C:plastid | GGT1 (GLUTAMATEGLYOXYLATE AMINOTRANSFERASE) L-ALANINE2-OXOGLUTARATE AMINOTRANSFERASE/ GLYCINE2-OXOGLUTARATE AMINOTRANSFERASE |
| AT1G48420
| Predictedpull down | FSW = 0.1054
| Class C:plastid | D-CDES (D-CYSTEINE DESULFHYDRASE) 1-AMINOCYCLOPROPANE-1-CARBOXYLATE DEAMINASE/ D-CYSTEINE DESULFHYDRASE/ CATALYTIC |
| AT5G23140
| Predictedpull down | FSW = 0.1047
| Class C:plastid | NCLPP7 (NUCLEAR-ENCODED CLP PROTEASE P7) SERINE-TYPE ENDOPEPTIDASE |
| AT2G04842
| Predictedpull down | FSW = 0.0991
| Class C:plastid | EMB2761 (EMBRYO DEFECTIVE 2761) ATP BINDING / AMINOACYL-TRNA LIGASE/ LIGASE FORMING AMINOACYL-TRNA AND RELATED COMPOUNDS / NUCLEOTIDE BINDING / THREONINE-TRNA LIGASE |
| AT4G34620
| Predictedpull down | FSW = 0.2046
| Class C:plastid | SSR16 (SMALL SUBUNIT RIBOSOMAL PROTEIN 16) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT2G04270
| Predictedpull down | FSW = 0.2438
| Class C:plastid | RNEE/G (RNASE E/G-LIKE) ENDORIBONUCLEASE |
| AT5G40950
| PredictedAffinity Capture-MS | FSW = 0.2516
| Class C:plastid | RPL27 (RIBOSOMAL PROTEIN LARGE SUBUNIT 27) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT2G22360
| Predictedpull down | FSW = 0.0794
| Class C:plastid | DNAJ HEAT SHOCK FAMILY PROTEIN |
| AT4G01900
| Predictedpull down | FSW = 0.0241
| Class C:plastid | GLB1 (GLNB1 HOMOLOG) ACETYLGLUTAMATE KINASE REGULATOR |
| AT2G22230
| Predictedpull down | FSW = 0.2140
| Class C:plastid | BETA-HYDROXYACYL-ACP DEHYDRATASE PUTATIVE |
| AT3G03710
| Predictedpull down | FSW = 0.2771
| Class C:plastid | RIF10 (RESISTANT TO INHIBITION WITH FSM 10) 3-5-EXORIBONUCLEASE/ RNA BINDING / NUCLEIC ACID BINDING / POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE |
| AT3G10670
| Predictedpull down | FSW = 0.0390
| Class C:plastid | ATNAP7 ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES / PROTEIN BINDING / TRANSPORTER |
| AT3G18680
| Predictedpull down | FSW = 0.1600
| Class C:plastid | ASPARTATE/GLUTAMATE/URIDYLATE KINASE FAMILY PROTEIN |
| AT5G14100
| Predictedpull down | FSW = 0.0304
| Class C:plastid | ATNAP14 TRANSPORTER |
| AT5G30510
| Predictedpull down | FSW = 0.2898
| Class C:plastid | RPS1 (RIBOSOMAL PROTEIN S1) RNA BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT4G01310
| PredictedAffinity Capture-MS | FSW = 0.4105
| Class C:plastid | RIBOSOMAL PROTEIN L5 FAMILY PROTEIN |
| AT1G32990
| Predictedpull down | FSW = 0.1202
| Class C:plastid | PRPL11 (PLASTID RIBOSOMAL PROTEIN L11) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT5G03940
| Predictedpull down | FSW = 0.1021
| Class C:plastid | CPSRP54 (CHLOROPLAST SIGNAL RECOGNITION PARTICLE 54 KDA SUBUNIT) 7S RNA BINDING / GTP BINDING / MRNA BINDING / SIGNAL SEQUENCE BINDING |
| AT1G05190
| PredictedAffinity Capture-MS | FSW = 0.2964
| Class C:plastid | EMB2394 (EMBRYO DEFECTIVE 2394) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT1G78630
| PredictedAffinity Capture-MS | FSW = 0.3569
| Class C:plastid | EMB1473 (EMBRYO DEFECTIVE 1473) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT2G30390
| Predictedpull down | FSW = 0.0054
| Class C:plastid | FC2 (FERROCHELATASE 2) FERROCHELATASE |
| ATCG00330 | Predictedpull down | FSW = 0.2582
| Class C:plastid | 30S CHLOROPLAST RIBOSOMAL PROTEIN S14 |
| ATCG00380 | Predictedpull down | FSW = 0.4228
| Class C:plastid | CHLOROPLAST ENCODED RIBOSOMAL PROTEIN S4 |
| ATCG00740 | Predictedpull down | FSW = 0.2958
| Class C:plastid | RNA POLYMERASE ALPHA SUBUNIT |
| ATCG00790 | Predictedpull downAffinity Capture-MS | FSW = 0.2615
| Class C:plastid | CHLOROPLAST GENE ENCODING A RIBOSOMAL PROTEIN L16 WHICH IS A CONSTITUENT OF 50S LARGE RIBOSOMAL SUBUNIT |
| ATCG00820 | Predictedpull down | FSW = 0.2051
| Class C:plastid | ENCODES A 68-KDA PROTEIN OF THE SMALL RIBOSOMAL SUBUNIT |
| ATCG01240 | Predictedpull down | FSW = 0.4277
| Class C:plastid | 30S CHLOROPLAST RIBOSOMAL PROTEIN S7 |
| ATCG00160 | PredictedAffinity Capture-MS | FSW = 0.3126
| Class C:plastid | CHLOROPLAST RIBOSOMAL PROTEIN S2 |
| AT5G43900
| PredictedAffinity Capture-MS | FSW = 0.0044
| Class C:nucleus | MYA2 (ARABIDOPSIS MYOSIN 2) GTP-DEPENDENT PROTEIN BINDING / RAB GTPASE BINDING / MOTOR |
| AT1G75230
| Predictedpull down | FSW = 0.0622
| Class C:nucleus | HHH-GPD BASE EXCISION DNA REPAIR FAMILY PROTEIN |
| AT1G65540
| PredictedAffinity Capture-MS | FSW = 0.1169
| Unknown | CALCIUM-BINDING EF HAND FAMILY PROTEIN |
| AT1G14460
| Predictedpull down | FSW = 0.0254
| Unknown | DNA POLYMERASE-RELATED |
| AT4G38680
| Predictedpull down | FSW = 0.2216
| Unknown | GRP2 (GLYCINE RICH PROTEIN 2) DOUBLE-STRANDED DNA BINDING / MRNA BINDING / NUCLEIC ACID BINDING / SINGLE-STRANDED DNA BINDING |
| AT3G17465
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.2140
| Unknown | RPL3P (RIBOSOMAL PROTEIN L3 PLASTID) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT4G31460
| PredictedAffinity Capture-MS | FSW = 0.2667
| Unknown | RIBOSOMAL PROTEIN L28 FAMILY PROTEIN |
| AT3G19690
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MStwo hybridAffinity Capture-MStwo hybrid | FSW = 0.0163
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
| AT1G79500
| Predictedpull down | FSW = 0.1361
| Unknown | 2-DEHYDRO-3-DEOXYPHOSPHOOCTONATE ALDOLASE / PHOSPHO-2-DEHYDRO-3-DEOXYOCTONATE ALDOLASE / 3-DEOXY-D-MANNO-OCTULOSONIC ACID 8-PHOSPHATE SYNTHETASE (KDSA) |
| AT1G01290
| Predictedpull down | FSW = 0.0806
| Unknown | CNX3 (COFACTOR OF NITRATE REDUCTASE AND XANTHINE DEHYDROGENASE 3) CATALYTIC |
| AT1G62850
| Predictedpull down | FSW = 0.0623
| Unknown | TRANSLATION RELEASE FACTOR |
| AT1G66520
| Predictedpull down | FSW = 0.0885
| Unknown | PDE194 (PIGMENT DEFECTIVE 194) CATALYTIC/ FORMYLTETRAHYDROFOLATE DEFORMYLASE/ HYDROXYMETHYL- FORMYL- AND RELATED TRANSFERASE |
| AT1G80620
| Predictedpull down | FSW = 0.1829
| Unknown | RIBOSOMAL PROTEIN S15 FAMILY PROTEIN |
| AT2G01440
| Predictedpull down | FSW = 0.1081
| Unknown | ATP BINDING / ATP-DEPENDENT DNA HELICASE/ ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING |
| AT2G17510
| Predictedpull down | FSW = 0.2128
| Unknown | EMB2763 (EMBRYO DEFECTIVE 2763) RNA BINDING / RIBONUCLEASE |
| AT2G20060
| Predictedpull down | FSW = 0.4048
| Unknown | RIBOSOMAL PROTEIN L4 FAMILY PROTEIN |
| AT3G22310
| Predictedpull down | FSW = 0.3339
| Unknown | PMH1 (PUTATIVE MITOCHONDRIAL RNA HELICASE 1) ATP-DEPENDENT HELICASE/ DNA BINDING / RNA BINDING |
| AT3G24560
| Predictedpull down | FSW = 0.1537
| Unknown | RSY3 (RASPBERRY 3) |
| AT4G14140
| Predictedpull down | FSW = 0.0973
| Unknown | DMT2 (DNA METHYLTRANSFERASE 2) DNA (CYTOSINE-5-)-METHYLTRANSFERASE/ DNA BINDING / PROTEIN BINDING |
| AT4G21220
| Predictedpull down | FSW = 0.1703
| Unknown | BACTERIAL TRANSFERASE HEXAPEPTIDE REPEAT-CONTAINING PROTEIN |
| AT4G25730
| Predictedpull down | FSW = 0.0766
| Unknown | FTSJ-LIKE METHYLTRANSFERASE FAMILY PROTEIN |
| AT4G36020
| Predictedpull down | FSW = 0.1241
| Unknown | CSDP1 (COLD SHOCK DOMAIN PROTEIN 1) RNA BINDING / DOUBLE-STRANDED DNA BINDING / NUCLEIC ACID BINDING / SINGLE-STRANDED DNA BINDING |
| AT5G06410
| Predictedpull down | FSW = 0.0885
| Unknown | DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN |
| AT5G26880
| Predictedpull down | FSW = 0.0139
| Unknown | TRNA/RRNA METHYLTRANSFERASE (SPOU) FAMILY PROTEIN |
| AT5G51140
| Predictedpull down | FSW = 0.2958
| Unknown | PSEUDOURIDINE SYNTHASE FAMILY PROTEIN |
| AT5G63120
| Predictedpull down | FSW = 0.1275
| Unknown | ETHYLENE-RESPONSIVE DEAD BOX RNA HELICASE PUTATIVE (RH30) |
| AT5G64650
| Predictedpull downAffinity Capture-MS | FSW = 0.3611
| Unknown | RIBOSOMAL PROTEIN L17 FAMILY PROTEIN |
| ATCG01230 | Predictedpull down | FSW = 0.1604
| Unknown | CHLOROPLAST GENE ENCODING RIBOSOMAL PROTEIN S12 THE GENE IS LOCATED IN THREE DISTINCT LOCI ON THE CHLOROPLAST GENOME AND IS TRANSPLICED TO MAKE ONE TRANSCRIPT |
| AT1G07830
| PredictedAffinity Capture-MS | FSW = 0.2390
| Unknown | RIBOSOMAL PROTEIN L29 FAMILY PROTEIN |
| AT1G09270
| PredictedAffinity Capture-MS | FSW = 0.0057
| Unknown | IMPA-4 (IMPORTIN ALPHA ISOFORM 4) BINDING / PROTEIN TRANSPORTER |
| AT1G14620
| PredictedAffinity Capture-MS | FSW = 0.2897
| Unknown | DECOY (DECOY) |
| AT1G33040
| PredictedPhenotypic Enhancement | FSW = 0.0045
| Unknown | NACA5 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 5) |
| AT2G44150
| PredictedSynthetic Lethality | FSW = 0.0020
| Unknown | ASHH3 (HISTONE-LYSINE N-METHYLTRANSFERASE ASHH3) HISTONE-LYSINE N-METHYLTRANSFERASE |
| AT4G35490
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0739
| Unknown | MRPL11 (MITOCHONDRIAL RIBOSOMAL PROTEIN L11) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT5G64670
| PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.2794
| Unknown | RIBOSOMAL PROTEIN L15 FAMILY PROTEIN |
| AT5G67380
| Predictedinteraction prediction | FSW = 0.0015
| Unknown | CKA1 (CASEIN KINASE ALPHA 1) KINASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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