Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G32990 - ( PRPL11 (PLASTID RIBOSOMAL PROTEIN L11) structural constituent of ribosome )

25 Proteins interacs with AT1G32990
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G63490

Predicted

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FSW = 0.1202

Class C:

plastid

 RIBOSOMAL PROTEIN L1 FAMILY PROTEIN
AT5G23140

Predicted

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FSW = 0.1291

Class C:

plastid

 NCLPP7 (NUCLEAR-ENCODED CLP PROTEASE P7) SERINE-TYPE ENDOPEPTIDASE
AT4G30690

Predicted

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FSW = 0.1711

Class C:

plastid

 TRANSLATION INITIATION FACTOR 3 (IF-3) FAMILY PROTEIN
AT2G04270

Predicted

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FSW = 0.1793

Class C:

plastid

 RNEE/G (RNASE E/G-LIKE) ENDORIBONUCLEASE
AT5G14320

Predicted

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FSW = 0.1046

Class C:

plastid

 30S RIBOSOMAL PROTEIN S13 CHLOROPLAST (CS13)
AT1G18440

Predicted

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FSW = 0.0690

Class C:

plastid

 PEPTIDYL-TRNA HYDROLASE FAMILY PROTEIN
AT3G18680

Predicted

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FSW = 0.2204

Class C:

plastid

 ASPARTATE/GLUTAMATE/URIDYLATE KINASE FAMILY PROTEIN
AT3G29430

Predicted

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FSW = 0.0970

Class C:

plastid

 GERANYLGERANYL PYROPHOSPHATE SYNTHASE PUTATIVE / GGPP SYNTHETASE PUTATIVE / FARNESYLTRANSTRANSFERASE PUTATIVE
AT4G04350

Predicted

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FSW = 0.0497

Class C:

plastid

 EMB2369 (EMBRYO DEFECTIVE 2369) ATP BINDING / AMINOACYL-TRNA LIGASE/ LEUCINE-TRNA LIGASE/ NUCLEOTIDE BINDING
AT5G53920

Predicted

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FSW = 0.0315

Class C:

plastid

 RIBOSOMAL PROTEIN L11 METHYLTRANSFERASE-RELATED
AT1G24240

Predicted

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FSW = 0.2268

Class C:

plastid

 RIBOSOMAL PROTEIN L19 FAMILY PROTEIN
AT4G01800

Predicted

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FSW = 0.2353

Class C:

plastid

 PREPROTEIN TRANSLOCASE SECA SUBUNIT PUTATIVE
ATCG00190Predicted

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FSW = 0.0957

Class C:

plastid

 CHLOROPLAST DNA-DEPENDENT RNA POLYMERASE B SUBUNIT THE TRANSCRIPTION OF THIS GENE IS REGULATED BY A NUCLEAR ENCODED RNA POLYMERASE THIS GENE HAS BEEN TRANSFERRED TO MITOCHONDRIAL GENOME DURING CRUCIFER EVOLUTION
ATCG00780Predicted

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FSW = 0.0621

Class C:

plastid

 ENCODES A CHLOROPLAST RIBOSOMAL PROTEIN L14 A CONSTITUENT OF THE LARGE SUBUNIT OF THE RIBOSOMAL COMPLEX
ATCG00800Predicted

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FSW = 0.1869

Class C:

plastid

 ENCODES A CHLOROPLAST RIBOSOMAL PROTEIN S3 A CONSTITUENT OF THE SMALL SUBUNIT OF THE RIBOSOMAL COMPLEX
ATCG00830Predicted

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FSW = 0.1398

Class C:

plastid

 ENCODES A CHLOROPLAST RIBOSOMAL PROTEIN L2 A CONSTITUENT OF THE LARGE SUBUNIT OF THE RIBOSOMAL COMPLEX
AT4G37910

Predicted

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FSW = 0.0948

Unknown

 MTHSC70-1 (MITOCHONDRIAL HEAT SHOCK PROTEIN 70-1) ATP BINDING
AT1G53000

Predicted

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FSW = 0.1177

Unknown

 CYTIDYLYLTRANSFERASE FAMILY
AT1G26550

Predicted

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FSW = 0.1333

Unknown

 PEPTIDYL-PROLYL CIS-TRANS ISOMERASE PPIC-TYPE FAMILY PROTEIN
AT1G73740

Predicted

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FSW = 0.0776

Unknown

 GLYCOSYL TRANSFERASE FAMILY 28 PROTEIN
AT2G41530

Predicted

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FSW = 0.0143

Unknown

 SFGH (S-FORMYLGLUTATHIONE HYDROLASE) S-FORMYLGLUTATHIONE HYDROLASE/ HYDROLASE ACTING ON ESTER BONDS
AT3G22310

Predicted

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FSW = 0.1543

Unknown

 PMH1 (PUTATIVE MITOCHONDRIAL RNA HELICASE 1) ATP-DEPENDENT HELICASE/ DNA BINDING / RNA BINDING
AT4G21220

Predicted

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FSW = 0.1711

Unknown

 BACTERIAL TRANSFERASE HEXAPEPTIDE REPEAT-CONTAINING PROTEIN
AT5G06410

Predicted

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FSW = 0.0653

Unknown

 DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN
AT2G20060

Predicted

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FSW = 0.3791

Unknown

 RIBOSOMAL PROTEIN L4 FAMILY PROTEIN

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

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