Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G23140 - ( NCLPP7 (NUCLEAR-ENCODED CLP PROTEASE P7) serine-type endopeptidase )
38 Proteins interacs with AT5G23140| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT2G33210
   | Predictedpull down | FSW = 0.0357
| Class C:plastidmitochondrion | HSP60-2 (HEAT SHOCK PROTEIN 60-2) ATP BINDING |
| AT3G10690
| Predictedpull down | FSW = 0.1578
| Class C:plastidmitochondrion | DNA GYRASE SUBUNIT A FAMILY PROTEIN |
| AT3G27925
| Predictedpull down | FSW = 0.0952
| Class C:plastid | DEGP1 (DEGP PROTEASE 1) SERINE-TYPE ENDOPEPTIDASE/ SERINE-TYPE PEPTIDASE |
| AT3G63490
| Predictedpull down | FSW = 0.1047
| Class C:plastid | RIBOSOMAL PROTEIN L1 FAMILY PROTEIN |
| AT3G17170
| Predictedpull down | FSW = 0.0513
| Class C:plastid | RFC3 (REGULATOR OF FATTY-ACID COMPOSITION 3) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT1G79050
| Predictedpull down | FSW = 0.1337
| Class C:plastid | DNA REPAIR PROTEIN RECA |
| AT3G13120
| Predictedpull down | FSW = 0.0494
| Class C:plastid | 30S RIBOSOMAL PROTEIN S10 CHLOROPLAST PUTATIVE |
| AT3G27850
| Predictedpull down | FSW = 0.0324
| Class C:plastid | RPL12-C (RIBOSOMAL PROTEIN L12-C) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT4G34620
| Predictedpull down | FSW = 0.0947
| Class C:plastid | SSR16 (SMALL SUBUNIT RIBOSOMAL PROTEIN 16) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT1G03680
| Predictedtandem affinity purification | FSW = 0.0214
| Class C:plastid | ATHM1 ENZYME ACTIVATOR |
| AT4G01310
| Predictedpull down | FSW = 0.0744
| Class C:plastid | RIBOSOMAL PROTEIN L5 FAMILY PROTEIN |
| AT5G55220
| Predictedpull down | FSW = 0.2093
| Class C:plastid | TRIGGER FACTOR TYPE CHAPERONE FAMILY PROTEIN |
| AT1G12410
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.0216
| Class C:plastid | CLP2 (CLP PROTEASE PROTEOLYTIC SUBUNIT 2) SERINE-TYPE ENDOPEPTIDASE |
| AT1G24240
| Predictedpull down | FSW = 0.0711
| Class C:plastid | RIBOSOMAL PROTEIN L19 FAMILY PROTEIN |
| AT1G32990
| Predictedpull down | FSW = 0.1291
| Class C:plastid | PRPL11 (PLASTID RIBOSOMAL PROTEIN L11) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT1G78630
| Predictedpull down | FSW = 0.0993
| Class C:plastid | EMB1473 (EMBRYO DEFECTIVE 1473) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT2G33450
| Predictedpull down | FSW = 0.0425
| Class C:plastid | 50S RIBOSOMAL PROTEIN L28 CHLOROPLAST (CL28) |
| AT2G43030
| Predictedpull down | FSW = 0.0550
| Class C:plastid | RIBOSOMAL PROTEIN L3 FAMILY PROTEIN |
| AT1G01790
| Predictedpull down | FSW = 0.0780
| Class C:plastid | KEA1 (K EFFLUX ANTIPORTER 1) POTASSIUM ION TRANSMEMBRANE TRANSPORTER/ POTASSIUMHYDROGEN ANTIPORTER |
| AT4G01800
| Predictedpull down | FSW = 0.2045
| Class C:plastid | PREPROTEIN TRANSLOCASE SECA SUBUNIT PUTATIVE |
| ATCG00160 | Predictedpull down | FSW = 0.1048
| Class C:plastid | CHLOROPLAST RIBOSOMAL PROTEIN S2 |
| ATCG00180 | Predictedpull down | FSW = 0.2315
| Class C:plastid | RNA POLYMERASE BETA SUBUNIT-1 |
| ATCG01240 | Predictedpull down | FSW = 0.0996
| Class C:plastid | 30S CHLOROPLAST RIBOSOMAL PROTEIN S7 |
| AT5G63400
| Predictedpull down | FSW = 0.0121
| Class C:mitochondrion | ADK1 (ADENYLATE KINASE 1) ATP BINDING / ADENYLATE KINASE/ NUCLEOBASE NUCLEOSIDE NUCLEOTIDE KINASE/ NUCLEOTIDE KINASE/ PHOSPHOTRANSFERASE PHOSPHATE GROUP AS ACCEPTOR |
| AT4G37910
| Predictedpull down | FSW = 0.1705
| Class C:mitochondrion | MTHSC70-1 (MITOCHONDRIAL HEAT SHOCK PROTEIN 70-1) ATP BINDING |
| AT4G02930
| Predictedpull down | FSW = 0.1088
| Class C:mitochondrion | ELONGATION FACTOR TU PUTATIVE / EF-TU PUTATIVE |
| AT4G30930
| Predictedpull down | FSW = 0.0260
| Class C:mitochondrion | NFD1 (NUCLEAR FUSION DEFECTIVE 1) RNA BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT5G26860
| Predictedpull down | FSW = 0.1760
| Class C:mitochondrion | LON1 (LON PROTEASE 1) ATP BINDING / ATP-DEPENDENT PEPTIDASE/ SERINE-TYPE PEPTIDASE |
| AT2G36880
| Predictedpull down | FSW = 0.1944
| Unknown | MAT3 (METHIONINE ADENOSYLTRANSFERASE 3) COPPER ION BINDING / METHIONINE ADENOSYLTRANSFERASE |
| AT5G53350
| Predictedpull down | FSW = 0.1455
| Unknown | CLPX ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
| AT5G17290
| Predictedtwo hybridtwo hybrid | FSW = 0.0230
| Unknown | APG5 (AUTOPHAGY 5) TRANSPORTER |
| AT1G32380
| Predictedpull down | FSW = 0.0354
| Unknown | RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 2 / PHOSPHORIBOSYL DIPHOSPHATE SYNTHETASE 2 (PRS2) |
| AT2G20060
| Predictedpull down | FSW = 0.2173
| Unknown | RIBOSOMAL PROTEIN L4 FAMILY PROTEIN |
| AT4G09140
| Predictedpull down | FSW = 0.0324
| Unknown | MLH1 (MUTL-HOMOLOGUE 1) PROTEIN BINDING BRIDGING |
| AT5G63120
| Predictedpull down | FSW = 0.2045
| Unknown | ETHYLENE-RESPONSIVE DEAD BOX RNA HELICASE PUTATIVE (RH30) |
| AT1G33360
| Predictedin vitro | FSW = 0.0434
| Unknown | ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX PUTATIVE |
| AT5G49840
| Predictedin vitro | FSW = 0.0256
| Unknown | ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
| AT2G14250 | PredictedGene fusion method | FSW = 0.0245
| Unknown | ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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