Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G23140 - ( NCLPP7 (NUCLEAR-ENCODED CLP PROTEASE P7) serine-type endopeptidase )

38 Proteins interacs with AT5G23140
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT2G33210

Predicted

pull down

FSW = 0.0357

Class C:

plastid

mitochondrion

 HSP60-2 (HEAT SHOCK PROTEIN 60-2) ATP BINDING
AT3G10690

Predicted

pull down

FSW = 0.1578

Class C:

plastid

mitochondrion

 DNA GYRASE SUBUNIT A FAMILY PROTEIN
AT3G27925

Predicted

pull down

FSW = 0.0952

Class C:

plastid

 DEGP1 (DEGP PROTEASE 1) SERINE-TYPE ENDOPEPTIDASE/ SERINE-TYPE PEPTIDASE
AT3G63490

Predicted

pull down

FSW = 0.1047

Class C:

plastid

 RIBOSOMAL PROTEIN L1 FAMILY PROTEIN
AT3G17170

Predicted

pull down

FSW = 0.0513

Class C:

plastid

 RFC3 (REGULATOR OF FATTY-ACID COMPOSITION 3) STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G79050

Predicted

pull down

FSW = 0.1337

Class C:

plastid

 DNA REPAIR PROTEIN RECA
AT3G13120

Predicted

pull down

FSW = 0.0494

Class C:

plastid

 30S RIBOSOMAL PROTEIN S10 CHLOROPLAST PUTATIVE
AT3G27850

Predicted

pull down

FSW = 0.0324

Class C:

plastid

 RPL12-C (RIBOSOMAL PROTEIN L12-C) STRUCTURAL CONSTITUENT OF RIBOSOME
AT4G34620

Predicted

pull down

FSW = 0.0947

Class C:

plastid

 SSR16 (SMALL SUBUNIT RIBOSOMAL PROTEIN 16) STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G03680

Predicted

tandem affinity purification

FSW = 0.0214

Class C:

plastid

 ATHM1 ENZYME ACTIVATOR
AT4G01310

Predicted

pull down

FSW = 0.0744

Class C:

plastid

 RIBOSOMAL PROTEIN L5 FAMILY PROTEIN
AT5G55220

Predicted

pull down

FSW = 0.2093

Class C:

plastid

 TRIGGER FACTOR TYPE CHAPERONE FAMILY PROTEIN
AT1G12410

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.0216

Class C:

plastid

 CLP2 (CLP PROTEASE PROTEOLYTIC SUBUNIT 2) SERINE-TYPE ENDOPEPTIDASE
AT1G24240

Predicted

pull down

FSW = 0.0711

Class C:

plastid

 RIBOSOMAL PROTEIN L19 FAMILY PROTEIN
AT1G32990

Predicted

pull down

FSW = 0.1291

Class C:

plastid

 PRPL11 (PLASTID RIBOSOMAL PROTEIN L11) STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G78630

Predicted

pull down

FSW = 0.0993

Class C:

plastid

 EMB1473 (EMBRYO DEFECTIVE 1473) STRUCTURAL CONSTITUENT OF RIBOSOME
AT2G33450

Predicted

pull down

FSW = 0.0425

Class C:

plastid

 50S RIBOSOMAL PROTEIN L28 CHLOROPLAST (CL28)
AT2G43030

Predicted

pull down

FSW = 0.0550

Class C:

plastid

 RIBOSOMAL PROTEIN L3 FAMILY PROTEIN
AT1G01790

Predicted

pull down

FSW = 0.0780

Class C:

plastid

 KEA1 (K EFFLUX ANTIPORTER 1) POTASSIUM ION TRANSMEMBRANE TRANSPORTER/ POTASSIUMHYDROGEN ANTIPORTER
AT4G01800

Predicted

pull down

FSW = 0.2045

Class C:

plastid

 PREPROTEIN TRANSLOCASE SECA SUBUNIT PUTATIVE
ATCG00160Predicted

pull down

FSW = 0.1048

Class C:

plastid

 CHLOROPLAST RIBOSOMAL PROTEIN S2
ATCG00180Predicted

pull down

FSW = 0.2315

Class C:

plastid

 RNA POLYMERASE BETA SUBUNIT-1
ATCG01240Predicted

pull down

FSW = 0.0996

Class C:

plastid

 30S CHLOROPLAST RIBOSOMAL PROTEIN S7
AT5G63400

Predicted

pull down

FSW = 0.0121

Class C:

mitochondrion

 ADK1 (ADENYLATE KINASE 1) ATP BINDING / ADENYLATE KINASE/ NUCLEOBASE NUCLEOSIDE NUCLEOTIDE KINASE/ NUCLEOTIDE KINASE/ PHOSPHOTRANSFERASE PHOSPHATE GROUP AS ACCEPTOR
AT4G37910

Predicted

pull down

FSW = 0.1705

Class C:

mitochondrion

 MTHSC70-1 (MITOCHONDRIAL HEAT SHOCK PROTEIN 70-1) ATP BINDING
AT4G02930

Predicted

pull down

FSW = 0.1088

Class C:

mitochondrion

 ELONGATION FACTOR TU PUTATIVE / EF-TU PUTATIVE
AT4G30930

Predicted

pull down

FSW = 0.0260

Class C:

mitochondrion

 NFD1 (NUCLEAR FUSION DEFECTIVE 1) RNA BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME
AT5G26860

Predicted

pull down

FSW = 0.1760

Class C:

mitochondrion

 LON1 (LON PROTEASE 1) ATP BINDING / ATP-DEPENDENT PEPTIDASE/ SERINE-TYPE PEPTIDASE
AT2G36880

Predicted

pull down

FSW = 0.1944

Unknown

 MAT3 (METHIONINE ADENOSYLTRANSFERASE 3) COPPER ION BINDING / METHIONINE ADENOSYLTRANSFERASE
AT5G53350

Predicted

pull down

FSW = 0.1455

Unknown

 CLPX ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING
AT5G17290

Predicted

two hybrid

two hybrid

FSW = 0.0230

Unknown

 APG5 (AUTOPHAGY 5) TRANSPORTER
AT1G32380

Predicted

pull down

FSW = 0.0354

Unknown

 RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 2 / PHOSPHORIBOSYL DIPHOSPHATE SYNTHETASE 2 (PRS2)
AT2G20060

Predicted

pull down

FSW = 0.2173

Unknown

 RIBOSOMAL PROTEIN L4 FAMILY PROTEIN
AT4G09140

Predicted

pull down

FSW = 0.0324

Unknown

 MLH1 (MUTL-HOMOLOGUE 1) PROTEIN BINDING BRIDGING
AT5G63120

Predicted

pull down

FSW = 0.2045

Unknown

 ETHYLENE-RESPONSIVE DEAD BOX RNA HELICASE PUTATIVE (RH30)
AT1G33360

Predicted

in vitro

FSW = 0.0434

Unknown

 ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX PUTATIVE
AT5G49840

Predicted

in vitro

FSW = 0.0256

Unknown

 ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING
AT2G14250Predicted

Gene fusion method

FSW = 0.0245

Unknown

 ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

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