Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G43030 - ( ribosomal protein L3 family protein )

90 Proteins interacs with AT2G43030
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G09630

Predicted

Phenotypic Suppression

FSW = 0.0308

Class C:

plastid

 60S RIBOSOMAL PROTEIN L4/L1 (RPL4A)
AT5G41790

Predicted

pull down

FSW = 0.0438

Class C:

plastid

 CIP1 (COP1-INTERACTIVE PROTEIN 1) PROTEIN BINDING
AT3G48170

Predicted

Phenotypic Suppression

FSW = 0.0878

Class C:

plastid

 ALDH10A9 3-CHLOROALLYL ALDEHYDE DEHYDROGENASE/ OXIDOREDUCTASE
AT5G09660

Predicted

pull down

FSW = 0.0994

Class C:

plastid

 PMDH2 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 2) MALATE DEHYDROGENASE
AT2G33800

Predicted

pull down

FSW = 0.2917

Class C:

plastid

 RIBOSOMAL PROTEIN S5 FAMILY PROTEIN
AT1G48420

Predicted

pull down

FSW = 0.0561

Class C:

plastid

 D-CDES (D-CYSTEINE DESULFHYDRASE) 1-AMINOCYCLOPROPANE-1-CARBOXYLATE DEAMINASE/ D-CYSTEINE DESULFHYDRASE/ CATALYTIC
AT4G31210Predicted

pull down

FSW = 0.1200

Class C:

plastid

 DNA TOPOISOMERASE FAMILY PROTEIN
AT5G23140

Predicted

pull down

FSW = 0.0550

Class C:

plastid

 NCLPP7 (NUCLEAR-ENCODED CLP PROTEASE P7) SERINE-TYPE ENDOPEPTIDASE
AT2G04842

Predicted

pull down

FSW = 0.0225

Class C:

plastid

 EMB2761 (EMBRYO DEFECTIVE 2761) ATP BINDING / AMINOACYL-TRNA LIGASE/ LIGASE FORMING AMINOACYL-TRNA AND RELATED COMPOUNDS / NUCLEOTIDE BINDING / THREONINE-TRNA LIGASE
AT2G25840

Predicted

pull down

FSW = 0.0295

Class C:

plastid

 OVA4 (OVULE ABORTION 4) ATP BINDING / AMINOACYL-TRNA LIGASE/ NUCLEOTIDE BINDING / TRYPTOPHAN-TRNA LIGASE
AT4G30690

Predicted

pull down

FSW = 0.0353

Class C:

plastid

 TRANSLATION INITIATION FACTOR 3 (IF-3) FAMILY PROTEIN
AT2G19870

Predicted

pull down

FSW = 0.0182

Class C:

plastid

 TRNA/RRNA METHYLTRANSFERASE (SPOU) FAMILY PROTEIN
AT2G04270

Predicted

pull down

FSW = 0.0753

Class C:

plastid

 RNEE/G (RNASE E/G-LIKE) ENDORIBONUCLEASE
AT2G40400

Predicted

Phenotypic Enhancement

FSW = 0.0260

Class C:

plastid

 UNKNOWN PROTEIN
AT2G22230

Predicted

pull down

FSW = 0.0606

Class C:

plastid

 BETA-HYDROXYACYL-ACP DEHYDRATASE PUTATIVE
AT1G17220

Predicted

pull down

FSW = 0.0958

Class C:

plastid

 FUG1 (FU-GAERI1) TRANSLATION INITIATION FACTOR
AT2G38040

Predicted

pull down

FSW = 0.1157

Class C:

plastid

 CAC3 ACETYL-COA CARBOXYLASE
AT3G18680

Predicted

pull down

FSW = 0.0381

Class C:

plastid

 ASPARTATE/GLUTAMATE/URIDYLATE KINASE FAMILY PROTEIN
AT3G29430

Predicted

pull down

FSW = 0.0306

Class C:

plastid

 GERANYLGERANYL PYROPHOSPHATE SYNTHASE PUTATIVE / GGPP SYNTHETASE PUTATIVE / FARNESYLTRANSTRANSFERASE PUTATIVE
AT4G04350

Predicted

pull down

FSW = 0.0259

Class C:

plastid

 EMB2369 (EMBRYO DEFECTIVE 2369) ATP BINDING / AMINOACYL-TRNA LIGASE/ LEUCINE-TRNA LIGASE/ NUCLEOTIDE BINDING
AT4G20960

Predicted

pull down

FSW = 0.0521

Class C:

plastid

 CYTIDINE/DEOXYCYTIDYLATE DEAMINASE FAMILY PROTEIN
AT5G15450

Predicted

pull down

FSW = 0.0404

Class C:

plastid

 CLPB3 (CASEIN LYTIC PROTEINASE B3) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING
AT5G55220

Predicted

pull down

FSW = 0.0556

Class C:

plastid

 TRIGGER FACTOR TYPE CHAPERONE FAMILY PROTEIN
AT5G35360

Predicted

pull down

FSW = 0.0675

Class C:

plastid

 CAC2 ACETYL-COA CARBOXYLASE/ BIOTIN CARBOXYLASE
AT4G02260

Predicted

pull down

FSW = 0.0808

Class C:

plastid

 RSH1 (RELA-SPOT HOMOLOG 1) CATALYTIC
AT5G03650

Predicted

Affinity Capture-MS

FSW = 0.1204

Class C:

plastid

 SBE22 (STARCH BRANCHING ENZYME 22) 14-ALPHA-GLUCAN BRANCHING ENZYME
ATCG00180Predicted

pull down

FSW = 0.1727

Class C:

plastid

 RNA POLYMERASE BETA SUBUNIT-1
ATCG00740Predicted

pull down

FSW = 0.0832

Class C:

plastid

 RNA POLYMERASE ALPHA SUBUNIT
ATCG00830Predicted

pull down

FSW = 0.1896

Class C:

plastid

 ENCODES A CHLOROPLAST RIBOSOMAL PROTEIN L2 A CONSTITUENT OF THE LARGE SUBUNIT OF THE RIBOSOMAL COMPLEX
AT4G37910

Predicted

pull down

FSW = 0.0743

Unknown

 MTHSC70-1 (MITOCHONDRIAL HEAT SHOCK PROTEIN 70-1) ATP BINDING
AT3G62870

Predicted

synthetic growth defect

FSW = 0.0099

Unknown

 60S RIBOSOMAL PROTEIN L7A (RPL7AB)
AT5G10350

Predicted

Phenotypic Enhancement

FSW = 0.0167

Unknown

 POLYADENYLATE-BINDING PROTEIN FAMILY PROTEIN / PABP FAMILY PROTEIN
AT5G13450

Predicted

Phenotypic Suppression

FSW = 0.0303

Unknown

 ATP SYNTHASE DELTA CHAIN MITOCHONDRIAL PUTATIVE / H(+)-TRANSPORTING TWO-SECTOR ATPASE DELTA (OSCP) SUBUNIT PUTATIVE
AT4G36640

Predicted

Phenotypic Enhancement

FSW = 0.0278

Unknown

 SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLYCERIDE TRANSFER FAMILY PROTEIN
AT1G04750

Predicted

Phenotypic Enhancement

FSW = 0.0790

Unknown

 VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721)
AT4G21680

Predicted

Phenotypic Enhancement

FSW = 0.0327

Unknown

 PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN
AT4G38680

Predicted

pull down

FSW = 0.1032

Unknown

 GRP2 (GLYCINE RICH PROTEIN 2) DOUBLE-STRANDED DNA BINDING / MRNA BINDING / NUCLEIC ACID BINDING / SINGLE-STRANDED DNA BINDING
AT4G18800

Predicted

synthetic growth defect

synthetic growth defect

FSW = 0.0291

Unknown

 ATRABA1D (ARABIDOPSIS RAB GTPASE HOMOLOG A1D) GTP BINDING
AT1G60550

Predicted

pull down

FSW = 0.0246

Unknown

 ECHID (ENOYL-COA HYDRATASE/ISOMERASE D) CATALYTIC/ NAPHTHOATE SYNTHASE
AT1G63780

Predicted

Phenotypic Enhancement

FSW = 0.0104

Unknown

 IMP4
AT2G38560

Predicted

Phenotypic Enhancement

FSW = 0.0061

Unknown

 TFIIS (TRANSCRIPT ELONGATION FACTOR IIS) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION ELONGATION FACTOR/ TRANSCRIPTION FACTOR
AT2G38880

Predicted

Affinity Capture-MS

FSW = 0.0808

Unknown

 NF-YB1 (NUCLEAR FACTOR Y SUBUNIT B1) TRANSCRIPTION FACTOR
AT3G20970

Predicted

Affinity Capture-MS

FSW = 0.0608

Unknown

 NFU4 STRUCTURAL MOLECULE
AT4G11060

Predicted

pull down

FSW = 0.1070

Unknown

 MTSSB (MITOCHONDRIALLY TARGETED SINGLE-STRANDED DNA BINDING PROTEIN) SINGLE-STRANDED DNA BINDING
AT5G26860

Predicted

pull down

FSW = 0.0497

Unknown

 LON1 (LON PROTEASE 1) ATP BINDING / ATP-DEPENDENT PEPTIDASE/ SERINE-TYPE PEPTIDASE
AT5G65750

Predicted

pull down

FSW = 0.0059

Unknown

 2-OXOGLUTARATE DEHYDROGENASE E1 COMPONENT PUTATIVE / OXOGLUTARATE DECARBOXYLASE PUTATIVE / ALPHA-KETOGLUTARIC DEHYDROGENASE PUTATIVE
AT4G33710

Predicted

Phenotypic Suppression

FSW = 0.0470

Unknown

 PATHOGENESIS-RELATED PROTEIN PUTATIVE
AT3G54840

Predicted

Phenotypic Enhancement

FSW = 0.0702

Unknown

 ARA6 GTP BINDING / GTPASE
AT4G27070

Predicted

Colocalization

Colocalization

FSW = 0.0942

Unknown

 TSB2 (TRYPTOPHAN SYNTHASE BETA-SUBUNIT 2) TRYPTOPHAN SYNTHASE
AT1G79500

Predicted

pull down

FSW = 0.0177

Unknown

 2-DEHYDRO-3-DEOXYPHOSPHOOCTONATE ALDOLASE / PHOSPHO-2-DEHYDRO-3-DEOXYOCTONATE ALDOLASE / 3-DEOXY-D-MANNO-OCTULOSONIC ACID 8-PHOSPHATE SYNTHETASE (KDSA)
AT1G77990

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1249

Unknown

 AST56 SULFATE TRANSMEMBRANE TRANSPORTER
AT2G18230

Predicted

pull down

FSW = 0.0375

Unknown

 ATPPA2 (ARABIDOPSIS THALIANA PYROPHOSPHORYLASE 2) INORGANIC DIPHOSPHATASE/ PYROPHOSPHATASE
AT2G29540

Predicted

Affinity Capture-MS

FSW = 0.0714

Unknown

 ATRPC14 (RNA POLYMERASE 14 KDA SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION
AT4G17190

Predicted

Phenotypic Enhancement

FSW = 0.0509

Unknown

 FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) DIMETHYLALLYLTRANSTRANSFERASE/ GERANYLTRANSTRANSFERASE
AT1G62850

Predicted

pull down

FSW = 0.0473

Unknown

 TRANSLATION RELEASE FACTOR
AT2G17510

Predicted

pull down

FSW = 0.0574

Unknown

 EMB2763 (EMBRYO DEFECTIVE 2763) RNA BINDING / RIBONUCLEASE
AT2G20060

Predicted

pull down

FSW = 0.3165

Unknown

 RIBOSOMAL PROTEIN L4 FAMILY PROTEIN
AT3G13180

Predicted

pull down

FSW = 0.0991

Unknown

 NOL1/NOP2/SUN FAMILY PROTEIN / ANTITERMINATION NUSB DOMAIN-CONTAINING PROTEIN
AT3G22310

Predicted

pull down

FSW = 0.1016

Unknown

 PMH1 (PUTATIVE MITOCHONDRIAL RNA HELICASE 1) ATP-DEPENDENT HELICASE/ DNA BINDING / RNA BINDING
AT4G14140

Predicted

pull down

FSW = 0.0548

Unknown

 DMT2 (DNA METHYLTRANSFERASE 2) DNA (CYTOSINE-5-)-METHYLTRANSFERASE/ DNA BINDING / PROTEIN BINDING
AT4G18460

Predicted

pull down

FSW = 0.0112

Unknown

 D-TYR-TRNA(TYR) DEACYLASE FAMILY PROTEIN
AT4G21220

Predicted

pull down

FSW = 0.0465

Unknown

 BACTERIAL TRANSFERASE HEXAPEPTIDE REPEAT-CONTAINING PROTEIN
AT4G25730

Predicted

pull down

FSW = 0.0254

Unknown

 FTSJ-LIKE METHYLTRANSFERASE FAMILY PROTEIN
AT4G29540

Predicted

pull down

FSW = 0.0250

Unknown

 BACTERIAL TRANSFERASE HEXAPEPTIDE REPEAT-CONTAINING PROTEIN
AT4G31150

Predicted

pull down

FSW = 0.0521

Unknown

 ENDONUCLEASE V FAMILY PROTEIN
AT4G36020

Predicted

pull down

FSW = 0.0832

Unknown

 CSDP1 (COLD SHOCK DOMAIN PROTEIN 1) RNA BINDING / DOUBLE-STRANDED DNA BINDING / NUCLEIC ACID BINDING / SINGLE-STRANDED DNA BINDING
AT5G10910

Predicted

pull down

FSW = 0.0108

Unknown

 MRAW METHYLASE FAMILY PROTEIN
AT5G51140

Predicted

pull down

FSW = 0.1244

Unknown

 PSEUDOURIDINE SYNTHASE FAMILY PROTEIN
AT5G63120

Predicted

pull down

FSW = 0.1356

Unknown

 ETHYLENE-RESPONSIVE DEAD BOX RNA HELICASE PUTATIVE (RH30)
AT5G64650

Predicted

pull down

FSW = 0.0915

Unknown

 RIBOSOMAL PROTEIN L17 FAMILY PROTEIN
AT1G23460

Predicted

Phenotypic Enhancement

FSW = 0.0410

Unknown

 POLYGALACTURONASE
AT1G27040

Predicted

Phenotypic Suppression

FSW = 0.0524

Unknown

 NITRATE TRANSPORTER PUTATIVE
AT1G29970

Predicted

Phenotypic Enhancement

FSW = 0.0299

Unknown

 RPL18AA (60S RIBOSOMAL PROTEIN L18A-1)
AT2G15910

Predicted

Affinity Capture-MS

Affinity Capture-MS

synthetic growth defect

Affinity Capture-MS

synthetic growth defect

FSW = 0.1544

Unknown

 CSL ZINC FINGER DOMAIN-CONTAINING PROTEIN
AT2G38600

Predicted

Phenotypic Enhancement

FSW = 0.0173

Unknown

 ACID PHOSPHATASE CLASS B FAMILY PROTEIN
AT1G10090

Predicted

synthetic growth defect

FSW = 0.0247

Unknown

 UNKNOWN PROTEIN
AT1G72680

Predicted

Affinity Capture-MS

FSW = 0.0879

Unknown

 CINNAMYL-ALCOHOL DEHYDROGENASE PUTATIVE
AT2G31900

Predicted

Affinity Capture-MS

FSW = 0.0903

Unknown

 XIF MOTOR
AT3G18850

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Phenotypic Enhancement

FSW = 0.1289

Unknown

 LPAT5 ACYLTRANSFERASE
AT3G50780

Predicted

Affinity Capture-MS

FSW = 0.1211

Unknown

 INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS PRLI-INTERACTING FACTOR-RELATED (TAIRAT1G638501) HAS 173 BLAST HITS TO 173 PROTEINS IN 14 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 8 FUNGI - 0 PLANTS - 164 VIRUSES - 0 OTHER EUKARYOTES - 1 (SOURCE NCBI BLINK)
AT5G08160

Predicted

Synthetic Lethality

FSW = 0.0225

Unknown

 ATPK3 ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT5G41700

Predicted

Affinity Capture-MS

Affinity Capture-MS

Phenotypic Enhancement

FSW = 0.0772

Unknown

 UBC8 (UBIQUITIN CONJUGATING ENZYME 8) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT5G61010

Predicted

Affinity Capture-MS

FSW = 0.0589

Unknown

 ATEXO70E2 (EXOCYST SUBUNIT EXO70 FAMILY PROTEIN E2) PROTEIN BINDING
AT5G65980

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

Affinity Capture-Western

synthetic growth defect

Phenotypic Enhancement

FSW = 0.0232

Unknown

 AUXIN EFFLUX CARRIER FAMILY PROTEIN
AT2G48100

Predicted

Phenotypic Enhancement

FSW = 0.0307

Unknown

 EXONUCLEASE FAMILY PROTEIN
AT3G09640

Predicted

Phenotypic Suppression

FSW = 0.0319

Unknown

 APX2 (ASCORBATE PEROXIDASE 2) L-ASCORBATE PEROXIDASE
AT3G11240

Predicted

Phenotypic Enhancement

FSW = 0.0514

Unknown

 ATE2 (ARGININE-TRNA PROTEIN TRANSFERASE 2) ARGINYLTRANSFERASE
AT3G12200

Predicted

Colocalization

Colocalization

FSW = 0.0895

Unknown

 ATNEK7 (NIMA-RELATED KINASE7) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE
AT3G13720

Predicted

Phenotypic Enhancement

FSW = 0.0269

Unknown

 PRA8
AT5G15070

Predicted

Affinity Capture-MS

FSW = 0.0227

Unknown

 ACID PHOSPHATASE/ OXIDOREDUCTASE/ TRANSITION METAL ION BINDING

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

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